BAC Information

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BAC

Clone NameB6Ng01-280C17
Chromosome11 (Build37)
Map Location 56,776,567 - 56,980,630
singlet/doubletdoublet
Overlap geneGria1
Upstream geneNmur2, LOC100040816, LOC624168
Downstream geneLOC667878, 1810073G14Rik, Mfap3, Galnt10, Sap30l, Hand1, LOC624605, Larp1, LOC676527, LOC667947, Cnot8, Gemin5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-280C17.bB6Ng01-280C17.g
ACCGA079964GA079965
length1,086851
definitionB6Ng01-280C17.b B6Ng01-280C17.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(56,776,567 - 56,777,651)(56,979,784 - 56,980,630)
sequence
gaattccaacacactcttatcccgagcttttgtccccgccggcaagaaca
cactcaagacaaccggaatcttctgcagcaaagcttttattgcttactta
tcaggcgggaagaccccaaaccgggaaaacggcgctgcttatatagcccg
cagcgtgacgtttcagcacctgatgtggcgtgacagctcctgattcgttg
ctcacctatcactccattactatgccttgagatgggcagtgactaggcgt
gagttcactcttgcacttgtgcataaggcttgtttactagttaggtgcag
tggaagccagcgccatcttataatggtgattgctcgcggcacggctctcc
acacactctattaaaccttcctagtcaatcgaaatctacaggcccaggag
ccttgtggcatctatgagggttctcacctgtagttggaagtgtaatgaga
tggaggaaacttttctggaatccctgctaggatggataggaaaaaatact
ttctagaggtctggagataagggccacataaccagcaagagacagttaac
tgttgtcagattcccaagggactcagttatgagctgtggccatctccttt
cccattcatcctctctaagggattcctgagttcttccttccaacttctct
ctcagtgcaagaaagatcactctccattacttgcttttcttcaaaagtca
tactgattaatccaagcctaggttcctcagtcaaggtccataaaccaaag
gaagacagccattactacccacagcaaagacaggcattcaccgtgcccca
catcaaaaaatggccccaccactctgcctacagcaaagatggccaaccac
tttttcccataggccaaaacaaaaatcatattttaaatggtagggatggt
aatatttatccatgttctgaaatgggtgggattctatttcagtatccata
gaggggctttttcaaaggagatttactgatttataattcacatatattac
atggtattccatttacaggttagggcatggagtagagctcagttcataga
cagcagaatgttgtgcccaatgtccttcctgtgttg
gaattcaggtggctctcatgctctataactcgcccatcactcacatagaa
ctttatggaagggtgaattgaggcacaaaagcagggagcatgggctgccc
agccttgggaaggagctcagatctggacaattaccaccagctgatactgt
aacaggaacccagcagctccccagcacgctgtgcttagtgtcttttgtac
ccacatttgaattgcttttctaaggttctcagaacacgtcaggaaatagc
tccacctgagaagcaatgcaggggcctgggatttcagaagaaattccgag
aatagcaatgtgtgctgttgtcctggggcttcctctgcctatgccctgtg
aaaatgaagttccctggagagtgtgtgtgcaaggggagaggtgcagctca
aatggactctgatgcaaatagctggcaaagaaagagagaaaggaaggcaa
ggacatgcatgctatggagcaggtgagaagttgtagaaagtagctcaagg
aagctgtgtccaccatcctgcttttgtgtgaccactccagatagctccag
atagaaggagcttagctcatgtcctcagcttctctctaagcagcccacac
tgtggcaggcagggaactgtttccttccaggtcaccatacttctgccatg
ctcctcagaatctcccttcaacacatggaaaacttgtgcagtctttaaaa
gccagctagatgcggattccagtagaaagccttccagaaaaggccactcc
cctcttcctgtgccgacacattttctcagcatttgtctccagaaaggctg
tgagtttttttgttttttttgttttttaatttgttggggggggggggagg
g
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_56776567_56777651
seq2: B6Ng01-280C17.b_46_1131

seq1  GAATTCCAACACACTCTTATCCCGAGCTTTTGTCCCCGCCGGCAAGAACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAACACACTCTTATCCCGAGCTTTTGTCCCCGCCGGCAAGAACA  50

seq1  CACTCAAGACAACCGGAATCTTCTGCAGCAAAGCTTTTATTGCTTACTTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCAAGACAACCGGAATCTTCTGCAGCAAAGCTTTTATTGCTTACTTA  100

seq1  TCAGGCGGGAAGACCCCAAACCGGGAAAACGGCGCTGCTTATATAGCCCG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGCGGGAAGACCCCAAACCGGGAAAACGGCGCTGCTTATATAGCCCG  150

seq1  CAGCGTGACGTTTCAGCACCTGATGTGGCGTGACAGCTCCTGATTCGTTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCGTGACGTTTCAGCACCTGATGTGGCGTGACAGCTCCTGATTCGTTG  200

seq1  CTCACCTATCACTCCATTACTATGCCTTGAGATGGGCAGTGACTAGGCGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACCTATCACTCCATTACTATGCCTTGAGATGGGCAGTGACTAGGCGT  250

seq1  GAGTTCACTCTTGCACTTGTGCATAAGGCTTGTTTACTAGTTAGGTGCAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTCACTCTTGCACTTGTGCATAAGGCTTGTTTACTAGTTAGGTGCAG  300

seq1  TGGAAGCCAGCGCCATCTTATAATGGTGATTGCTCGCGGCACGGCTCTCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAGCCAGCGCCATCTTATAATGGTGATTGCTCGCGGCACGGCTCTCC  350

seq1  ACACACTCTATTAAACCTTCCTAGTCAATCGAAATCTACAGGCCCAGGAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACTCTATTAAACCTTCCTAGTCAATCGAAATCTACAGGCCCAGGAG  400

seq1  CCTTGTGGCATCTATGAGGGTTCTCACCTGTAGTTGGAAGTGTAATGAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGTGGCATCTATGAGGGTTCTCACCTGTAGTTGGAAGTGTAATGAGA  450

seq1  TGGAGGAAACTTTTCTGGAATCCCTGCTAGGATGGATAGGAAAAAATACT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGGAAACTTTTCTGGAATCCCTGCTAGGATGGATAGGAAAAAATACT  500

seq1  TTCTAGAGGTCTGGAGATAAGGGCCACATAACCAGCAAGAGACAGTTAAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTAGAGGTCTGGAGATAAGGGCCACATAACCAGCAAGAGACAGTTAAC  550

seq1  TGTTGTCAGATTCCCAAGGGACTCAGTTATGAGCTGTGGCCATCTCCTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGTCAGATTCCCAAGGGACTCAGTTATGAGCTGTGGCCATCTCCTTT  600

seq1  CCCATTCATCCTCTCTAAGGGATTCCTGAGTTCTTCCTTCCAACTTCTCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATTCATCCTCTCTAAGGGATTCCTGAGTTCTTCCTTCCAACTTCTCT  650

seq1  CTCAGTGCAAGAAAGATCACTCTCCATTACTTGCTTTTCTTCAAAAGTCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGTGCAAGAAAGATCACTCTCCATTACTTGCTTTTCTTCAAAAGTCA  700

seq1  TACTGATTAATCCAAGCCTAGGTTCCTCAGTCAAGGTCCATAAACCAAAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGATTAATCCAAGCCTAGGTTCCTCAGTCAAGGTCCATAAACCAAAG  750

seq1  GAAGACAGCCATTACTACCCACAGCAAAGACAGGCATTCACCGTGCCCCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGACAGCCATTACTACCCACAGCAAAGACAGGCATTCACCGTGCCCCA  800

seq1  CATCAAAAAATGGCCCCACCACTCTGCCTACAGCAAAGATGGCCAACCAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCAAAAAATGGCCCCACCACTCTGCCTACAGCAAAGATGGCCAACCAC  850

seq1  TTTTTCCCATAGGCCAAAACAAAAATCATATTTTAAATGGTAGGGATGGT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCCCATAGGCCAAAACAAAAATCATATTTTAAATGGTAGGGATGGT  900

seq1  AATATTTATCCATG-TCTGAAATGGGTGGGATTCTAATTTCAGTATCCAT  949
      |||||||||||||| |||||||||||||||||||| ||||||||||||||
seq2  AATATTTATCCATGTTCTGAAATGGGTGGGATTCT-ATTTCAGTATCCAT  949

seq1  AGAGGGGCTTTTTCAAAGGAGATTTACTGATTTATAATTCACATATAATA  999
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  AGAGGGGCTTTTTCAAAGGAGATTTACTGATTTATAATTCACATATATTA  999

seq1  CATGGTA-TCCATTTACAGTTTAGGGCATGGAGTAGAGCTCAG-TCATAG  1047
      ||||||| ||||||||||| ||||||||||||||||||||||| ||||||
seq2  CATGGTATTCCATTTACAGGTTAGGGCATGGAGTAGAGCTCAGTTCATAG  1049

seq1  AACAGCAGAAATGTGTGCCCAGTGTCTTTCCTGTGTTG  1085
       |||||||||   |||||||| |||| |||||||||||
seq2  -ACAGCAGAATGTTGTGCCCAATGTCCTTCCTGTGTTG  1086

seq1: chr11_56979784_56980630
seq2: B6Ng01-280C17.g_71_921 (reverse)

seq1  CCCT--CCCCCCCCCCAACAAATTAAAAAAC-AAAAAAACAAAAAAACTC  47
      ||||  ||||||||||||||||||||||||| ||||||||||||||||||
seq2  CCCTCCCCCCCCCCCCAACAAATTAAAAAACAAAAAAAACAAAAAAACTC  50

seq1  ACAGCC-TTCTGGAGACAAATGCTGAGAAAATGTGTCGGCACAGGAAGAG  96
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCCTTTCTGGAGACAAATGCTGAGAAAATGTGTCGGCACAGGAAGAG  100

seq1  GGGAGTGGCCTTTTCTGGAAGGCTTTCTACTGGAATCCGCATCTAGCTGG  146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGTGGCCTTTTCTGGAAGGCTTTCTACTGGAATCCGCATCTAGCTGG  150

seq1  CTTTTAAAGACTGCACAAGTTTTCCATGTGTTGAAGGGAGATTCTGAGGA  196
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTAAAGACTGCACAAGTTTTCCATGTGTTGAAGGGAGATTCTGAGGA  200

seq1  GCATGGCAGAAGTATGGTGACCTGGAAGGAAACAGTTCCCTGCCTGCCAC  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGGCAGAAGTATGGTGACCTGGAAGGAAACAGTTCCCTGCCTGCCAC  250

seq1  AGTGTGGGCTGCTTAGAGAGAAGCTGAGGACATGAGCTAAGCTCCTTCTA  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTGGGCTGCTTAGAGAGAAGCTGAGGACATGAGCTAAGCTCCTTCTA  300

seq1  TCTGGAGCTATCTGGAGTGGTCACACAAAAGCAGGATGGTGGACACAGCT  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGAGCTATCTGGAGTGGTCACACAAAAGCAGGATGGTGGACACAGCT  350

seq1  TCCTTGAGCTACTTTCTACAACTTCTCACCTGCTCCATAGCATGCATGTC  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTGAGCTACTTTCTACAACTTCTCACCTGCTCCATAGCATGCATGTC  400

seq1  CTTGCCTTCCTTTCTCTCTTTCTTTGCCAGCTATTTGCATCAGAGTCCAT  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCCTTCCTTTCTCTCTTTCTTTGCCAGCTATTTGCATCAGAGTCCAT  450

seq1  TTGAGCTGCACCTCTCCCCTTGCACACACACTCTCCAGGGAACTTCATTT  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGCTGCACCTCTCCCCTTGCACACACACTCTCCAGGGAACTTCATTT  500

seq1  TCACAGGGCATAGGCAGAGGAAGCCCCAGGACAACAGCACACATTGCTAT  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAGGGCATAGGCAGAGGAAGCCCCAGGACAACAGCACACATTGCTAT  550

seq1  TCTCGGAATTTCTTCTGAAATCCCAGGCCCCTGCATTGCTTCTCAGGTGG  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCGGAATTTCTTCTGAAATCCCAGGCCCCTGCATTGCTTCTCAGGTGG  600

seq1  AGCTATTTCCTGACGTGTTCTGAGAACCTTAGAAAAGCAATTCAAATGTG  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTATTTCCTGACGTGTTCTGAGAACCTTAGAAAAGCAATTCAAATGTG  650

seq1  GGTACAAAAGACACTAAGCACAGCGTGCTGGGGAGCTGCTGGGTTCCTGT  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTACAAAAGACACTAAGCACAGCGTGCTGGGGAGCTGCTGGGTTCCTGT  700

seq1  TACAGTATCAGCTGGTGGTAATTGTCCAGATCTGAGCTCCTTCCCAAGGC  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGTATCAGCTGGTGGTAATTGTCCAGATCTGAGCTCCTTCCCAAGGC  750

seq1  TGGGCAGCCCATGCTCCCTGCTTTTGTGCCTCAATTCACCCTTCCATAAA  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCAGCCCATGCTCCCTGCTTTTGTGCCTCAATTCACCCTTCCATAAA  800

seq1  GTTCTATGTGAGTGATGGGCGAGTTATAGAGCATGAGAGCCACCTGAATT  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTATGTGAGTGATGGGCGAGTTATAGAGCATGAGAGCCACCTGAATT  850

seq1  C  847
      |
seq2  C  851