BAC Information

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BAC

Clone NameB6Ng01-281E21
Chromosome11 (Build37)
Map Location 51,357,963 - 51,501,703
singlet/doubletdoublet
Overlap geneCol23a1, Agxt2l2, Hnrpab, Nola2, Rmnd5b, C330016O10Rik, D930048N14Rik, 0610009B22Rik
Upstream geneAdamts2, Zfp354c, 9630041N07Rik, Grm6, Zfp454, Zfp2, Zfp354b, Prop1, Olfr1379-ps1, Olfr1378, Olfr1377, Olfr226-ps1, Olfr51, Olfr54, Olfr1375-ps1, Zfp354a, LOC100040275, LOC382518, Olfr1374-ps1, 5133400J02Rik, LOC622699, BC049762, Clk4
Downstream geneSec24a, LOC100040402, Sar1b, Phf15, D11Ertd497e, Ube2b, Cdkl3, LOC100040437, Ppp2ca, Olfr1373, Olfr1372-ps1, Olfr1371, Skp1a, Tcf7, Vdac1, 9530068E07Rik, LOC667659, LOC667667, LOC100040523
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-281E21.bB6Ng01-281E21.g
ACCGA080818GA080819
length833955
definitionB6Ng01-281E21.b B6Ng01-281E21.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(51,357,963 - 51,358,748)(51,500,746 - 51,501,703)
sequence
gaattccaggagagccaaggctacacagagaaaccctgccttgagaagaa
aactacaaagaaccaactctgagataacctgctccccactgccttcatcc
ttgccctggaggagacagcaggaagcatcagcccttatcttccccaaaag
gaagtggctggctccacagctctcagggcctgattatcttgaggccccag
ggacagagccccagactcggaaaccccatctcagggatggctccatggac
ccctgtttaggtacaacccactggggctgtgaaggacagaaccaactacc
tgtaactctggcttcaagggatccaacgtcctctctggcctctgttggta
cagatatgcataatttaaaataaaataaagccgggcgtggtggcacacac
ctttaatcccagcacttgggaggcagaggcaggggaatttctgagtttga
ggccagcctggtctacagagttctaggacagccagggctatacagagaaa
ccctgtctcaaaaaaaaaaacaaaaaacaaaaaacaaatcaaaaaaaaaa
aatctctgggaagtggtggcacacacctttatttccagtactggggagac
aaagacaggcagatttctgtgagttcaagacagcctgttctatacagagt
gacttccaagacagtcaaggctacaccgtgaaaccttgtctcaaaaaacc
aataaatttatttatgtatttatttatttatttattattttaaaaagact
atttcttttttttatgtatgtttttttgcctgtgtgtatatatgtggcac
cgtgtgtctgcctgggtgcccagggaggtcaga
gaattcaagccattttctgatacttgtaggccagtctgggcttcataaga
ccttttattttattttttaaaaaaggttaataacaaaataaaatagcaaa
atgtacgggtttatttaatggactctgtcatcgtgttgtaaatgaatctg
tgggtaaatagatgtatcgccatctttaatagccccaaagcaaggatgac
agtccatcctagtatctttagttatcctttggcaggttcatccatgtgtt
ttaatgtggttttcagcccttgtcaccctctcatcccacacccactgaac
cccctttcccttctattttcatatctatacattttttaaaattattatta
ttgtggatgtatgtgacacatcatgggagtgcctgcttgctatatggtac
atgtgtaagagaggacaactttgtgaagttgatcatctcctcctcctcct
cctgtcttctttcttcttgtgacagagtctctttctgtagccctgactgt
cctggaacttgctttgcagaacaagctagctttgaactcacagatcctct
agcctctgcctactgagttctggactgagcatgcgtgtgtacccactgag
tttaacttgggtatttatgggtaggggtttatttatggagcatacacaat
tttaatggtggatacaccaatgaggaaaaacgagtcccctgaaccagcag
ccattatttacttgttttcaagaataggtgagattctttaattcttcgga
aatttttagtggaaacttagtcctctgaaagagcaaccaatgatcttaac
caccaagacctccactgaaagccttgattaaattcctaaagctatagttt
ttattttatgacgtgtctcttaaacgatagtcccttatcctgggtttttg
ggttttgggtttttggttcttttttattattacacttctaggaactagct
gctgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_51357963_51358748
seq2: B6Ng01-281E21.b_47_835

seq1  GAATTCCAGGAGAGCCAAGGCTACACAGAGAAACCCTGCCTTGAGAAGAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGGAGAGCCAAGGCTACACAGAGAAACCCTGCCTTGAGAAGAA  50

seq1  AACTACAAAGAACCAACTCTGAGATAACCTGCTCCCCACTGCCTTCATCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTACAAAGAACCAACTCTGAGATAACCTGCTCCCCACTGCCTTCATCC  100

seq1  TTGCCCTGGAGGAGACAGCAGGAAGCATCAGCCCTTATCTTCCCCAAAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCCCTGGAGGAGACAGCAGGAAGCATCAGCCCTTATCTTCCCCAAAAG  150

seq1  GAAGTGGCTGGCTCCACAGCTCTCAGGGCCTGATTATCTTGAGGCCCCAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTGGCTGGCTCCACAGCTCTCAGGGCCTGATTATCTTGAGGCCCCAG  200

seq1  GGACAGAGCCCCAGACTCGGAAACCCCATCTCAGGGATGGCTCCATGGAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACAGAGCCCCAGACTCGGAAACCCCATCTCAGGGATGGCTCCATGGAC  250

seq1  CCCTGTTTAGGTACAACCCACTGGGGCTGTGAAGGACAGAACCAACTACC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGTTTAGGTACAACCCACTGGGGCTGTGAAGGACAGAACCAACTACC  300

seq1  TGTAACTCTGGCTTCAAGGGATCCAACGTCCTCTCTGGCCTCTGTTGGTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAACTCTGGCTTCAAGGGATCCAACGTCCTCTCTGGCCTCTGTTGGTA  350

seq1  CAGATATGCATAATTTAAAATAAAATAAAGCCGGGCGTGGTGGCACACAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATATGCATAATTTAAAATAAAATAAAGCCGGGCGTGGTGGCACACAC  400

seq1  CTTTAATCCCAGCACTTGGGAGGCAGAGGCAGGGGAATTTCTGAGTTTGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAATCCCAGCACTTGGGAGGCAGAGGCAGGGGAATTTCTGAGTTTGA  450

seq1  GGCCAGCCTGGTCTACAGAGTTCTAGGACAGCCAGGGCTATACAGAGAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCAGCCTGGTCTACAGAGTTCTAGGACAGCCAGGGCTATACAGAGAAA  500

seq1  CCCTGTCTCAAAAAAAAAAACAAAAAACAAAAAACAAATCAAAAAAAAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGTCTCAAAAAAAAAAACAAAAAACAAAAAACAAATCAAAAAAAAAA  550

seq1  AATCTCTGGGAAGTGGTGGCACACACCTTTATTTCCAGTACTGGGGAGAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTCTGGGAAGTGGTGGCACACACCTTTATTTCCAGTACTGGGGAGAC  600

seq1  AAAGACAGGCAGATTTCTGTGAGTTCAAGACAGCCTGTTCTATACAGAGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGACAGGCAGATTTCTGTGAGTTCAAGACAGCCTGTTCTATACAGAGT  650

seq1  GACTTCCAAGACAGTCAAGGCTACACCGTGAAACCTTGTCTCAAAAAACC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTCCAAGACAGTCAAGGCTACACCGTGAAACCTTGTCTCAAAAAACC  700

seq1  AATAAATTTATTTATGTATTTATTTATTTATTTATTATTTT-AAAAGACT  749
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  AATAAATTTATTTATGTATTTATTTATTTATTTATTATTTTAAAAAGACT  750

seq1  ATTTC-TTTTTTTATGTATG-TTTTTTGCCTGTGTGTAT  786
      ||||| |||||||||||||| ||||||||||||||||||
seq2  ATTTCTTTTTTTTATGTATGTTTTTTTGCCTGTGTGTAT  789

seq1: chr11_51500746_51501703
seq2: B6Ng01-281E21.g_66_1020 (reverse)

seq1  CCAGCAGCTAGTTCC-AG-AGTGATAAAAAAAAAAAAAAAAAAAACAAAA  48
      ||||||||||||||| || ||||      || || |||||| || |||||
seq2  CCAGCAGCTAGTTCCTAGAAGTG-----TAATAATAAAAAAGAACCAAAA  45

seq1  ACCAAAAACCAAAAAACCCAGGATAAGGGACTATCGTTTAAGAGACACGT  98
      ||| |||||| |||||||||||||||||||||||||||||||||||||||
seq2  ACCCAAAACCCAAAAACCCAGGATAAGGGACTATCGTTTAAGAGACACGT  95

seq1  CATAAAATAAAAACTATAGCTTTAGGAATTTAATCAAGGCTTTCAGTGGA  148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAAAATAAAAACTATAGCTTTAGGAATTTAATCAAGGCTTTCAGTGGA  145

seq1  GGTCTTGGTGGTTAAGATCATTGGTTGCTCTTTCAGAGGACCTAAGTTTC  198
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  GGTCTTGGTGGTTAAGATCATTGGTTGCTCTTTCAGAGGA-CTAAGTTTC  194

seq1  CACTAAAAATTTCCGAAGAATTAAAGAATCTCACCTATTCTTGAAAACAA  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTAAAAATTTCCGAAGAATTAAAGAATCTCACCTATTCTTGAAAACAA  244

seq1  GTAAATAATGGCTGCTGGTTCAGGGGACTCGTTTTTCCTCATTGGTGTAT  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAATAATGGCTGCTGGTTCAGGGGACTCGTTTTTCCTCATTGGTGTAT  294

seq1  CCACCATT-AAATTGTGTATGCTCCATAAATAAACCCCTACCCATAAATA  347
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  CCACCATTAAAATTGTGTATGCTCCATAAATAAACCCCTACCCATAAATA  344

seq1  CCCAAGTTAAACTCAGTGGGTACACACGCATGCTCAGTCCAGAACTCAGT  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAAGTTAAACTCAGTGGGTACACACGCATGCTCAGTCCAGAACTCAGT  394

seq1  AGGCAGAGGCTAGAGGATCTGTGAGTTCAAAGCTAGCTTGTTCTGCAAAG  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAGAGGCTAGAGGATCTGTGAGTTCAAAGCTAGCTTGTTCTGCAAAG  444

seq1  CAAGTTCCAGGACAGTCAGGGCTACAGAAAGAGACTCTGTCACAAGAAGA  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTTCCAGGACAGTCAGGGCTACAGAAAGAGACTCTGTCACAAGAAGA  494

seq1  AAGAAGACAGGAGGAGGAGGAGGAGATGATCAACTTCACAAAGTTGTCCT  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAGACAGGAGGAGGAGGAGGAGATGATCAACTTCACAAAGTTGTCCT  544

seq1  CTCTTACACATGTACCATATAGCAAGCAGGCACTCCCATGATGTGTCACA  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTACACATGTACCATATAGCAAGCAGGCACTCCCATGATGTGTCACA  594

seq1  TACATCCACAATAATAATAATTTTAAAAAATGTATAGATATGAAAATAGA  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATCCACAATAATAATAATTTTAAAAAATGTATAGATATGAAAATAGA  644

seq1  AGGGAAAGGGGGTTCAGTGGGTGTGGGATGAGAGGGTGACAAGGGCTGAA  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAAAGGGGGTTCAGTGGGTGTGGGATGAGAGGGTGACAAGGGCTGAA  694

seq1  AACCACATTAAAACACATGGATGAACCTGCCAAAGGATAACTAAAGATAC  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCACATTAAAACACATGGATGAACCTGCCAAAGGATAACTAAAGATAC  744

seq1  TAGGATGGACTGTCATCCTTGCTTTGGGGCTATTAAAGATGGCGATACAT  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGATGGACTGTCATCCTTGCTTTGGGGCTATTAAAGATGGCGATACAT  794

seq1  CTATTTACCCACAGATTCATTTACAACACGATGACAGAGTCCATTAAATA  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTTACCCACAGATTCATTTACAACACGATGACAGAGTCCATTAAATA  844

seq1  AACCCGTACATTTTGCTATTTTATTTTGTTATTAACCTTTTTTAAAAAAT  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCGTACATTTTGCTATTTTATTTTGTTATTAACCTTTTTTAAAAAAT  894

seq1  AAAATAAAAGGTCTTATGAAGCCCAGACTGGCCTACAAGTATCAGAAAAT  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATAAAAGGTCTTATGAAGCCCAGACTGGCCTACAAGTATCAGAAAAT  944

seq1  GGCTTGAATTC  958
      |||||||||||
seq2  GGCTTGAATTC  955