BAC Information

Click to search

BAC

Clone NameB6Ng01-281M03
Chromosome11 (Build37)
Map Location 67,786,479 - 67,929,658
singlet/doubletdoublet
Overlap geneStx8
Upstream geneA730055C05Rik, 2310004I24Rik, Sco1, Myh3, Myh2, Myh1, Myh4, Myh8, Myh13, Gas7, Rcvrn, Glp2r, LOC544792, Dhrs7c, LOC100041899, Usp43, Wdr16
Downstream geneNtn1, Pik3r5, BB220380, BC024997, Ccdc42, Myh10, Ndel1, 9930039A11Rik, Rpl26, Odf4, Arhgef15, Slc25a35, 2400006H24Rik, Pfas, 1500010J02Rik, Aurkb, 2310047M10Rik, Tmem107, Vamp2, Per1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-281M03.bB6Ng01-281M03.g
ACCGA081152GA081153
length7481,104
definitionB6Ng01-281M03.b B6Ng01-281M03.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(67,928,911 - 67,929,658)(67,786,479 - 67,787,568)
sequence
gaattcactttcttatgcttatttgtttagtggataaattagttttaatg
tatataatgctttgcttgcacgaatgcaagagcaccacatctgtgcagtg
ccacagaggccagaagaggatgtcaaatccccagaactggagttatagac
agttgtgacctgccatgtgggtgctgggactcaaacctgaggcctctgca
agagcagcctcctaactgctgagtcatctccccatttctcttattatttt
ataagtttcaaaagagtgaatataagtggtccaaacattacaatcagcat
aatggcaccaatggatttcagggctgacgatttcagttgcaaaatttcaa
aattccataagtaaacaaaaaaccaaccaaacaaaaccacctttttaatt
caaagaagatgcttacttcatgattctacaaaattcctatataataatat
aatatagtatatattaataatatagtacaatatgtataatttgctctctt
ttttttgatgttttttttttttttttttttttttttttttttgagaaaat
ttatttatttattttatgtaagtacactgtagctgtcttcagacacacca
gaagagggcatcagatctcattacggatggttgtgagccaccatgtggtt
gctgggatttgaactctggacctttggaagaacagtcgggtgctcttacc
cactgagccatctcaccagcccttgttttgttttttgagaaagggttt
gaattccagttgagtatgaatgcaggctgacagtttccactcagtatctg
cgttcccgtgtggaccaggttgccatgaacaggcaggtgcactatgggta
caagctccaggtgggtggctagaccaggatgccattgagacctttacaac
cctgagagtgtccttgggaggccaagcctctctcccaggcctttttaact
tagcagatgctacaccgcaggcccagtggactcaggctgtgtccttctct
ttgcagcttaccttgacaatcagaacgttgttgaagaatctgaaggtaaa
gatcgaccttttgaaggacttactgctaagagctgtgtcgacacgccaga
tgtatccatgtaaacatttccaccttttctggagtgggaggaaaaacaat
cttaagacaggaaggaatctgggccatccagatttttccacagctcaagg
aggacttggtttccacactgttgctataattttacattctgtcttaagtg
tctgctcactgttacagtgactgtgctagcaagggacgacctacctaagg
aatgaatttgtttgggtataaccttgacaggcaggaagctaatgctttct
gtcagtgctttgtggagctgcacactgctctctgtcactgccttgaggat
ggctggatgctgctccaaccagaggacttccatgacacttctgagcggtg
gttccctgctggacgttgcagaacattttccccccctttttctcagtagc
ccaagcaggactcagattcacttttgtagccaaacctctgccctcacatc
cctgagaactcaggtaaaggcatactccggtgcaccccagttttgtgtgg
tgctggggatggcatcaggactctgcatgctagccaaatgctcccccgac
tgagcagtctctcattcccttgggatgtctgtaatctgcttcgtgcccat
aacatcctttttgctttttaaatttcagccataggctggagaaggtatga
cttgcctgttctcatttcttcatggacacaggtaaattgtcctagtttgg
gagctttggggggtagaagtgtggttgggacatttgcacttaaggctaag
ctgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_67928911_67929658
seq2: B6Ng01-281M03.b_48_795 (reverse)

seq1  AAACCCTGTCTCAAAAAACAAAACAAGGGCTGGTGAGATGGCTCAGTGGG  50
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCCTTTCTCAAAAAACAAAACAAGGGCTGGTGAGATGGCTCAGTGGG  50

seq1  TAAGAGCACCCGACTGCTCTTCCAAAGGTCCAGAGTTCAAATCCCAGCAA  100
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  TAAGAGCACCCGACTGTTCTTCCAAAGGTCCAGAGTTCAAATCCCAGCAA  100

seq1  CCACATGGTGGCTCACAACCATCCGTAATGAGATCTGATGCCCTCTTCTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACATGGTGGCTCACAACCATCCGTAATGAGATCTGATGCCCTCTTCTG  150

seq1  GTGTGTCTGAAGACAGCTACAGTGTACTTACATAAAATAAATAAATAAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTCTGAAGACAGCTACAGTGTACTTACATAAAATAAATAAATAAAT  200

seq1  CTTCTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACATCAAAAAAAA  250
       |||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACATCAAAAAAAA  250

seq1  GAGAGCAAATTATACATATTGTACTATATTATTAATATATACTATATTAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGCAAATTATACATATTGTACTATATTATTAATATATACTATATTAT  300

seq1  ATTATTATATAGGAATTTTGTAGAATCATGAAGTAAGCATCTTCTTTGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATTATATAGGAATTTTGTAGAATCATGAAGTAAGCATCTTCTTTGAA  350

seq1  TTAAAAAGGTGGTTTTGTTTGGTTGGTTTTTTGTTTACTTATGGAATTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAAAGGTGGTTTTGTTTGGTTGGTTTTTTGTTTACTTATGGAATTTT  400

seq1  GAAATTTTGCAACTGAAATCGTCAGCCCTGAAATCCATTGGTGCCATTAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATTTTGCAACTGAAATCGTCAGCCCTGAAATCCATTGGTGCCATTAT  450

seq1  GCTGATTGTAATGTTTGGACCACTTATATTCACTCTTTTGAAACTTATAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGATTGTAATGTTTGGACCACTTATATTCACTCTTTTGAAACTTATAA  500

seq1  AATAATAAGAGAAATGGGGAGATGACTCAGCAGTTAGGAGGCTGCTCTTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAATAAGAGAAATGGGGAGATGACTCAGCAGTTAGGAGGCTGCTCTTG  550

seq1  CAGAGGCCTCAGGTTTGAGTCCCAGCACCCACATGGCAGGTCACAACTGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGGCCTCAGGTTTGAGTCCCAGCACCCACATGGCAGGTCACAACTGT  600

seq1  CTATAACTCCAGTTCTGGGGATTTGACATCCTCTTCTGGCCTCTGTGGCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATAACTCCAGTTCTGGGGATTTGACATCCTCTTCTGGCCTCTGTGGCA  650

seq1  CTGCACAGATGTGGTGCTCTTGCATTCGTGCAAGCAAAGCATTATATACA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCACAGATGTGGTGCTCTTGCATTCGTGCAAGCAAAGCATTATATACA  700

seq1  TTAAAACTAATTTATCCACTAAACAAATAAGCATAAGAAAGTGAATTC  748
      ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAACTAATTTATCCACTAAACAAATAAGCATAAGAAAGTGAATTC  748

seq1: chr11_67786479_67787568
seq2: B6Ng01-281M03.g_75_1177

seq1  GAATTCCAGTTGAGTATGAATGCAGGCTGACAGTTTCCACTCAGTATCTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGTTGAGTATGAATGCAGGCTGACAGTTTCCACTCAGTATCTG  50

seq1  CGTTCCCGTGTGGACCAGGTTGCCATGAACAGGCAGGTGCACTATGGGTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTTCCCGTGTGGACCAGGTTGCCATGAACAGGCAGGTGCACTATGGGTA  100

seq1  CAAGCTCCAGGTGGGTGGCTAGACCAGGATGCCATTGAGACCTTTACAAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCTCCAGGTGGGTGGCTAGACCAGGATGCCATTGAGACCTTTACAAC  150

seq1  CCTGAGAGTGTCCTTGGGAGGCCAAGCCTCTCTCCCAGGCCTTTTTAACT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGAGAGTGTCCTTGGGAGGCCAAGCCTCTCTCCCAGGCCTTTTTAACT  200

seq1  TAGCAGATGCTACACCGCAGGCCCAGTGGACTCAGGCTGTGTCCTTCTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCAGATGCTACACCGCAGGCCCAGTGGACTCAGGCTGTGTCCTTCTCT  250

seq1  TTGCAGCTTACCTTGACAATCAGAACGTTGTTGAAGAATCTGAAGGTAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCAGCTTACCTTGACAATCAGAACGTTGTTGAAGAATCTGAAGGTAAA  300

seq1  GATCGACCTTTTGAAGGACTTACTGCTAAGAGCTGTGTCGACACGCCAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCGACCTTTTGAAGGACTTACTGCTAAGAGCTGTGTCGACACGCCAGA  350

seq1  TGTATCCATGTAAACATTTCCACCTTTTCTGGAGTGGGAGGAAAAACAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATCCATGTAAACATTTCCACCTTTTCTGGAGTGGGAGGAAAAACAAT  400

seq1  CTTAAGACAGGAAGGAATCTGGGCCATCCAGATTTTTCCACAGCTCAAGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAAGACAGGAAGGAATCTGGGCCATCCAGATTTTTCCACAGCTCAAGG  450

seq1  AGGACTTGGTTTCCACACTGTTGCTATAATTTTACATTCTGTCTTAAGTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACTTGGTTTCCACACTGTTGCTATAATTTTACATTCTGTCTTAAGTG  500

seq1  TCTGCTCACTGTTACAGTGACTGTGCTAGCAAGGGACGACCTACCTAAGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCTCACTGTTACAGTGACTGTGCTAGCAAGGGACGACCTACCTAAGG  550

seq1  AATGAATTTGTTTGGGTATAACCTTGACAGGCAGGAAGCTAATGCTTTCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAATTTGTTTGGGTATAACCTTGACAGGCAGGAAGCTAATGCTTTCT  600

seq1  GTCAGTGCTTTGTGGAGCTGCACACTGCTCTCTGTCACTGCCTTGAGGAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGTGCTTTGTGGAGCTGCACACTGCTCTCTGTCACTGCCTTGAGGAT  650

seq1  GGCTGGATGCTGCTCCAACCAGAGGACTTCCATGACACTTCTGAGCGGTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGGATGCTGCTCCAACCAGAGGACTTCCATGACACTTCTGAGCGGTG  700

seq1  GTTCCCTGCTGGACGTTGCAGAACATTT--CCCCCCCTTTTCTCAGTAGC  748
      ||||||||||||||||||||||||||||  |||||| |||||||||||||
seq2  GTTCCCTGCTGGACGTTGCAGAACATTTTCCCCCCCTTTTTCTCAGTAGC  750

seq1  CCAAGCAGGACTCAGATTCAC-TTTGTAGCCAAACCTCTGCCCTCACAT-  796
      ||||||||||||||||||||| ||||||||||||||||||||||||||| 
seq2  CCAAGCAGGACTCAGATTCACTTTTGTAGCCAAACCTCTGCCCTCACATC  800

seq1  CCTGAGAACTCAGGTAAAGGCATACTCCGGTGCA-CCCAGTTTTGTGTGG  845
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  CCTGAGAACTCAGGTAAAGGCATACTCCGGTGCACCCCAGTTTTGTGTGG  850

seq1  TGCTGGGGATGGCATCAGGACTCTGCATGCTAGCCAAATGCTCCCCCGAC  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGGGGATGGCATCAGGACTCTGCATGCTAGCCAAATGCTCCCCCGAC  900

seq1  TGAGCAGTCTCTCATT-CCTTGGGATGTCTTGTAATCTGCTTCGTGCCCA  944
      |||||||||||||||| |||||||||||| ||||||||||||||||||| 
seq2  TGAGCAGTCTCTCATTCCCTTGGGATGTC-TGTAATCTGCTTCGTGCCC-  948

seq1  ATAACATCCTTTTTGCTTTTTAAAATTTCAGCCATAGGCTGGAG-AGGTA  993
      ||||||||||||||||||||| |||||||||||||||||||||| |||||
seq2  ATAACATCCTTTTTGCTTTTT-AAATTTCAGCCATAGGCTGGAGAAGGTA  997

seq1  TGACTTGCCTG-TCTCATTCTTTCAGGGACACAGGTAAATGTCCCTAGTT  1042
      ||||||||||| |||||||  |||| ||||||||||||||   |||||||
seq2  TGACTTGCCTGTTCTCATTTCTTCATGGACACAGGTAAATTGTCCTAGTT  1047

seq1  TGGGAGCTTT-GGGGGTAG-AGTGT-GTTGGGAC--TTG--ATTAAGGC-  1084
      |||||||||| |||||||| ||||| ||||||||  |||   ||||||| 
seq2  TGGGAGCTTTGGGGGGTAGAAGTGTGGTTGGGACATTTGCACTTAAGGCT  1097

seq1  AAGCTG  1090
      ||||||
seq2  AAGCTG  1103