BAC Information

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BAC

Clone NameB6Ng01-286I16
Chromosome17 (Build37)11 (Build37)
Map Location 3,014,027 - 3,014,344121,569,541 - 121,570,567
singlet/doubletsingletsinglet
Overlap genenone
Upstream genenone
Downstream geneLOC383196, LOC100040029, LOC432993, D030013I16Rik, LOC100040128, 1700024P12Rik, LOC435499, LOC224487, Rbm16, LOC665812, LOC621579, LOC624144, Tiam2, LOC630810, Tfb1m, Cldn20, 1700102H20Rik, Nox3
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-286I16.bB6Ng01-286I16.g
ACCGA084713GA084714
length1,0251,035
definitionB6Ng01-286I16.b B6Ng01-286I16.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(3,014,027 - 3,014,344)(121,569,541 - 121,570,567)
sequence
gaattctttgttcagttctgagccctattttttaatggggttatttgatt
ttctggggtccaccttcttgagttctttatatattattgcccgagctttt
gtccccgccggcaagaacacactcaggacaaccggagtcttctgcagcaa
agcttttattgcttacttatcaggagggaagaccccgaactgggaaaatg
gtgctgcttatatagcccacagcgtgacgtttcagcacctgatgtggcgt
gatagctcctgatttgttgctcgcccatcaccccattactacgctgcgag
atgggcagtgactaggcgtgagttcactcttgcacttgcgcataaggctt
gtttactagttaggcgcagtggaagccagcgccatcttataatggtgatt
gctcacggcacgcacgcgattgcttgcggcagggctctccacaatatata
ttggatattagtcccctatctgatttaggataggtaaagatcctttccca
atctgttggtggtctttttgtgtaattgatggtgtcttttgccttgcaga
agctttgcaactttatgaggtcccatttatcgatcctcgatcttacagca
caagccattgctgttctattcaggaatttttcccctgtacccatatcttc
gaggcttttccctactttctcagtgtctctggttttatgtggagttgaac
cagttaagaaactgaccaaagtagatgaacattgctgttgctgagttgca
gctatacagggcccagccttccctatcactctatgttgagggaggatctt
ttttttttattattcttgtaaaatatacataatataaaagctatcatttt
tatctttttaagttgatagttgagtggcattaagtacgttcacggtattg
tgggattatgattcccatccatcatcagattcttttaccatttcaactga
aattctatacccataaatactactcttcactcaccctctcatagccctgg
caccaccatgctacttcatgtatca

gaattcacctctgtgaaacattcctatgtctatgggtccagtgaggcaca
cttgtcccatgaatccttggtcctactgaaggactgcaaagtgagagagt
gttggaccttaaaactgaacacatccttttcatccaagcccccttttaag
aagacttctctttgttgtgtacccttaggaccctggagcttctgactcga
gggaagtgaggtgataggaggctgtgatccctgagaatggcttgtagttc
tggtccctagaggactgtttgcagctcctttgagatggagctcctaccct
tccagctgtcctacacactggttccggtttttggtgtctgccgtagactt
gaaatagttttgggtggggaacagaacagcataaagctgtgacatcccag
aggcttttgaggatggatattagggttgaggaagacacataaggtctcca
gggagagcacagctgacccagctccatctccacaagatagagccagaagc
ctcatggagaagccggcaagtacatggtagggcctgagattgagaaaggg
agctgtgtagctaggtgcctgctgggaattggggtaggtaaacctgggag
gagctcctcactaggagagagtagtcaggaactcctatcacagtgacaac
tatggatgctgattgattgaggttcgggcacacatttctcttaaaccagg
ccactccaaatgaggtggcaagtgtgcctaatagctgaagctgtggagtt
ggttttgtttctttctcttttttttcttttgtttggacacagcagatgtt
tttctgtgtgacagactgtagtgataagaaagtgtttttcacgttaatcc
ccggttcggggatatggggccgctttgcagcagctgactgattttgcctc
gtgctctcgcagaggcatgtttttggccagccacagatagtttctgtgat
tgtgttacattcgaagttctgtgaacttctcagaagaatatattaaatgc
aaggaccccagaggcggggtggggtggttggggtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_3014027_3014344
seq2: B6Ng01-286I16.b_138_455 (reverse)

seq1  GTGCCATGAGCAATCGCCATTATAAGATGGCGCTGGCTTCCACAGCGCCT  50
      ||||| ||||||||| ||||||||||||||||||||||||||| ||||||
seq2  GTGCCGTGAGCAATCACCATTATAAGATGGCGCTGGCTTCCACTGCGCCT  50

seq1  AACTAGTAAACAAGCCTTATGTGCAAGTGCAAGAGTGAACTCACGCCTAG  100
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  AACTAGTAAACAAGCCTTATGCGCAAGTGCAAGAGTGAACTCACGCCTAG  100

seq1  TCACTGCCCATCTTGCGGCGTAGTAATGGGGTGATGGGCGAACAACGAAT  150
      ||||||||||||| || |||||||||||||||||||||||| |||| |||
seq2  TCACTGCCCATCTCGCAGCGTAGTAATGGGGTGATGGGCGAGCAACAAAT  150

seq1  CAGGAGCTGTCACGCCACATCAGGTGCTGAAACGTCACGCTGCAGGCTAT  200
      |||||||| |||||||||||||||||||||||||||||||||  ||||||
seq2  CAGGAGCTATCACGCCACATCAGGTGCTGAAACGTCACGCTGTGGGCTAT  200

seq1  ATAAGCAGCGCCATTTTTCCGGTTCAGGGTCTTCCCTCCTGATAAGTAAG  250
      ||||||||| ||||||| || |||| ||||||||||||||||||||||||
seq2  ATAAGCAGCACCATTTTCCCAGTTCGGGGTCTTCCCTCCTGATAAGTAAG  250

seq1  CAATAAAAGCTTTGCCGCAGAAGATTCCGGTTGTCCTGAGTGTGTTCTTG  300
      ||||||||||||||| |||||||| |||||||||||||||||||||||||
seq2  CAATAAAAGCTTTGCTGCAGAAGACTCCGGTTGTCCTGAGTGTGTTCTTG  300

seq1  CTGGCGGGGACAAAAGCT  318
      | ||||||||||||||||
seq2  CCGGCGGGGACAAAAGCT  318


seq1: chr11_121569541_121570567
seq2: B6Ng01-286I16.g_69_1103

seq1  GAATTCACCTCTGTGAAACATTCCTATGTCTATGGGTCCAGTGAGGCACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACCTCTGTGAAACATTCCTATGTCTATGGGTCCAGTGAGGCACA  50

seq1  CTTGTCCCATGAATCCTTGGTCCTACTGAAGGACTGCAAAGTGAGAGAGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTCCCATGAATCCTTGGTCCTACTGAAGGACTGCAAAGTGAGAGAGT  100

seq1  GTTGGACCTTAAAACTGAACACATCCTTTTCATCCAAGCCCCCTTTTAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGGACCTTAAAACTGAACACATCCTTTTCATCCAAGCCCCCTTTTAAG  150

seq1  AAGACTTCTCTTTGTTGTGTACCCTTAGGACCCTGGAGCTTCTGACTCGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACTTCTCTTTGTTGTGTACCCTTAGGACCCTGGAGCTTCTGACTCGA  200

seq1  GGGAAGTGAGGTGATAGGAGGCTGTGATCCCTGAGAATGGCTTGTAGTTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAAGTGAGGTGATAGGAGGCTGTGATCCCTGAGAATGGCTTGTAGTTC  250

seq1  TGGTCCCTAGAGGACTGTTTGCAGCTCCTTTGAGATGGAGCTCCTACCCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTCCCTAGAGGACTGTTTGCAGCTCCTTTGAGATGGAGCTCCTACCCT  300

seq1  TCCAGCTGTCCTACACACTGGTTCCGGTTTTTGGTGTCTGCCGTAGACTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGCTGTCCTACACACTGGTTCCGGTTTTTGGTGTCTGCCGTAGACTT  350

seq1  GAAATAGTTTTGGGTGGGGAACAGAACAGCATAAAGCTGTGACATCCCAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATAGTTTTGGGTGGGGAACAGAACAGCATAAAGCTGTGACATCCCAG  400

seq1  AGGCTTTTGAGGATGGATATTAGGGTTGAGGAAGACACATAAGGTCTCCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTTTTGAGGATGGATATTAGGGTTGAGGAAGACACATAAGGTCTCCA  450

seq1  GGGAGAGCACAGCTGACCCAGCTCCATCTCCACAAGATAGAGCCAGAAGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGAGCACAGCTGACCCAGCTCCATCTCCACAAGATAGAGCCAGAAGC  500

seq1  CTCATGGAGAAGCCGGCAAGTACATGGTAGGGCCTGAGATTGAGAAAGGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATGGAGAAGCCGGCAAGTACATGGTAGGGCCTGAGATTGAGAAAGGG  550

seq1  AGCTGTGTAGCTAGGTGCCTGCTGGGAATTGGGGTAGGTAAACCTGGGAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGTGTAGCTAGGTGCCTGCTGGGAATTGGGGTAGGTAAACCTGGGAG  600

seq1  GAGCTCCTCACTAGGAGAGAGTAGTCAGGAACTCCTATCACAGTGACAAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTCCTCACTAGGAGAGAGTAGTCAGGAACTCCTATCACAGTGACAAC  650

seq1  TATGGATGCTGATTGATTGAGGTTCGGGCACACATTTCTCTTAAACCAGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGGATGCTGATTGATTGAGGTTCGGGCACACATTTCTCTTAAACCAGG  700

seq1  CCACTCCAAATGAGGTGGCAAGTGTGCCTAATAGCTGAAGCTGTGGAGTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTCCAAATGAGGTGGCAAGTGTGCCTAATAGCTGAAGCTGTGGAGTT  750

seq1  GGTTTTGTTTCTTTCTCTTTTTTTTCTTTTGTTTGGACACAGCAGATGTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTTGTTTCTTTCTCTTTTTTTTCTTTTGTTTGGACACAGCAGATGTT  800

seq1  TTTCTGTGTGACAGACTGTAGTGATAAGAAAGTG-TTTTCACGTTAATCC  849
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  TTTCTGTGTGACAGACTGTAGTGATAAGAAAGTGTTTTTCACGTTAATCC  850

seq1  CCGGTTCGGGGATATGGGGCCGCTTTGCAGCAGCTGACTGA-TTTGCCTC  898
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  CCGGTTCGGGGATATGGGGCCGCTTTGCAGCAGCTGACTGATTTTGCCTC  900

seq1  GTGCTCTCGCAGAGGCATG-TTTTGGCCAGCCACAGATAGTTTCTGTGAT  947
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  GTGCTCTCGCAGAGGCATGTTTTTGGCCAGCCACAGATAGTTTCTGTGAT  950

seq1  TGTGTAACATTCGAAGTTCTGTGAACTTCTCAG-AGAATATA-TAAATGC  995
      ||||| ||||||||||||||||||||||||||| |||||||| |||||||
seq2  TGTGTTACATTCGAAGTTCTGTGAACTTCTCAGAAGAATATATTAAATGC  1000

seq1  AAGGACCCCAGAGGCGGGGT-GGGTGGT--GGGTG  1027
      |||||||||||||||||||| |||||||  |||||
seq2  AAGGACCCCAGAGGCGGGGTGGGGTGGTTGGGGTG  1035


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