BAC Information

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BAC

Clone NameB6Ng01-286L03
Chromosome11 (Build37)
Map Location 61,449,731 - 61,590,589
singlet/doubletdoublet
Overlap geneGrap, Slc5a10, 2310040C09Rik, Prpsap2, Ulk2
Upstream geneLOC624424, OTTMUSG00000007757, LOC668206, Llgl1, Flii, Smcr7, Top3a, LOC100042517, Smcr8, Shmt1, LOC625958, LOC637900, Dhrs7b, Tmem11, Gtlf3b, Map2k3, Kcnj12, LOC668228, Tnfrsf13b, Usp22, LOC668239, Aldh3a1, Aldh3a2, 4933429E10Rik, 1300013J15Rik, LOC100042602, LOC626150, Zfp179, Mfap4, Mapk7, 3110043A19Rik, Eppb9, Epn2
Downstream geneAkap10, D630015H07, LOC626325, LOC100041558, Specc1, Adora2b, 2410012H22Rik, Ttc19, Ncor1, Pigl, Prr6, Ubb, Trpv2, 2410006H16Rik, BC046404, BC025076, Zfp287, LOC626482, LOC100042766
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-286L03.bB6Ng01-286L03.g
ACCGA084823GA084824
length1,177917
definitionB6Ng01-286L03.b B6Ng01-286L03.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(61,589,416 - 61,590,589)(61,449,731 - 61,450,574)
sequence
gaattcatgtgtaatctccactgaacttttaaatggttggaaattgcgtt
catgtgaacctttgcatttttctcacctgttatcttcaccaacagatctt
agtggaattttgagttgctggttgtttgcattttttgttgtgcatgcaga
atgtgcatcgactcctgtgatcttaggtttactaaaggctaagtttattt
gggcagtattagaaagctatcatgaatcaagaaatactcttgagaatttt
aatagggccaaatcaaagtgatgaataatggcttgttagtgatgtggagt
ttctacatgaaattagtaagaaatgaggttcgttttcccttaggaaatgg
gcagctctctccagactaatgtgtacttctcagtgttaaccctgagttca
ccatagctagtcatggcagatcagcacctctccaagaatggttcctgtgt
tgtatattatttggtatcttttacttacctgcttgaatacttgaataaac
cattcaccggttttaatccttttacttcaaaacttacacatactgaccta
ctctctgatagctgcacagaaactctttggcgccacacttgctttagtgt
gctgattaaagttaacagagaaaacatggttttcatttacttggtgaaca
aagtaatgtaatttttacattatttatctgtatgaaattccagcagttaa
tttgaacgtttatgtataggatgtttgtattcttaggtctttactacagt
gtttctacctctcatttgtaactgcattatcttcaaaataggtaaaaccc
actaagtcattgtggaatagccttttttaaattgcttgtacaaatgtata
ttaaggttaaataaaactgacagtgtttttaggttatagttgggttaata
tgaaggcttgtcaagccagatgcttccttagagagtgggttggaaacttg
gccatcaatattctttgccctgctccaggattcaaactcttgggaagctg
tcatgcaggctcctacagacagactattatccctccttatattagtggta
aatgcttcttgtattttaacacttaattcttcaagttctccaattacccc
gttatcctcagttgaaattttccaagtacctagaattgttagttggcctt
cctttctacccatttttaaattaatat
gaattcttgggagctttaaggttgggtaaggcacagtgacacccacccag
gtgatggggtaagaagtctgcaaagccccatggctgtaaatgctcaagac
tacacagccggaagccacaaggtggtcaactgggaacaccggtgttaaga
acaggtcacctcgctaggagctgttggccacagagaccctaggagccctc
aaacaataaaggctattgccacagtgggctgcattccaggcctgaatggt
gacatcctattgctgaaggggctgtacattttggctgctgacttggagaa
ttaaaggcagggctgggtccaaagtctctccttcctgagagcaactcctg
gagtgccagagtccccactaagaatgctggggaggattaaggcccaaagt
cctactcagctgtggatcctgcatgcttcgtgatagaaatgtcagacaag
acgtgtcggctagtacaatagtggacaggtggttatagccagacccaact
ttctgagtggactcaaggccagtcacaggtggggagtcacatctagtacc
aggaaattagacaactgtgggcaccagtgttttgtagttggagaaatacg
aacaacccccaaccaccatggtctggagatagagtggataggcaggcaag
gagagcattgtcagtcgtcgatgctacctcatccctggctcagggaccct
gtagaaggtggagctagaaagaatgcactgtaagtgaccgtcctctgagt
caagagaccatcacttgggggagttcagctatgctcccttacaaagatca
ttctaatctgggctggttgactgcttacagtctctcatggaggcacaggg
agggtcacaagaccctcatctgagtgagtatccagcagtcacatattata
taagaacctgtagggcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_61589416_61590589
seq2: B6Ng01-286L03.b_48_1224 (reverse)

seq1  ATATT--TTTAAAAAGTGGTAGAAGAGGAGGCCAACT-ACA--TCTAGTT  45
      |||||  ||||||||  |||||||  | ||||||||| |||  ||||| |
seq2  ATATTAATTTAAAAATGGGTAGAAAGGAAGGCCAACTAACAATTCTAGGT  50

seq1  ACTTGGAAAA--TCAACTGAGATAAACGGGGTAATTGGGAGAACATGAAA  93
      ||||||||||  |||||||||   |||||||||||| ||||||| || ||
seq2  ACTTGGAAAATTTCAACTGAGGATAACGGGGTAATT-GGAGAACTTG-AA  98

seq1  GAATTTAGTGTAAAAATTACAGAAGGCATTTTACCACTAATATAAGGAGG  143
      ||||| ||||| |||| ||||  | ||| |||||||||||||||||||||
seq2  GAATTAAGTGTTAAAA-TACAAGAAGCA-TTTACCACTAATATAAGGAGG  146

seq1  GAT-ATAGTCTTGTCTGTAGGAGCCTGCATGACAGCTT-CCAAGAGTTTT  191
      ||| |||||| ||||||||||||||||||||||||||| ||||||| |||
seq2  GATAATAGTC-TGTCTGTAGGAGCCTGCATGACAGCTTCCCAAGAG-TTT  194

seq1  GAATCCTGGAGCAGGGCAAAGAATATTGATGGCCAAGTTTCCAACCCACT  241
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATCCTGGAGCAGGGCAAAGAATATTGATGGCCAAGTTTCCAACCCACT  244

seq1  CTCTAAGGAAGCATCTGGCTTGACAAGCCTTCATATTAACCCAACTATAA  291
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTAAGGAAGCATCTGGCTTGACAAGCCTTCATATTAACCCAACTATAA  294

seq1  CCTAAAAACACTGTCAGTTTTATTTAACCTTAATATACATTTGTACAAGC  341
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAAAAACACTGTCAGTTTTATTTAACCTTAATATACATTTGTACAAGC  344

seq1  AATTTAAAAAAGGCTATTCCACAATGACTTAGTGGGTTTTACCTATTTTG  391
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTAAAAAAGGCTATTCCACAATGACTTAGTGGGTTTTACCTATTTTG  394

seq1  AAGATAATGCAGTTACAAATGAGAGGTAGAAACACTGTAGTAAAGACCTA  441
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATAATGCAGTTACAAATGAGAGGTAGAAACACTGTAGTAAAGACCTA  444

seq1  AGAATACAAACATCCTATACATAAACGTTCAAATTAACTGCTGGAATTTC  491
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATACAAACATCCTATACATAAACGTTCAAATTAACTGCTGGAATTTC  494

seq1  ATACAGATAAATAATGTAAAAATTACATTACTTTGTTCACCAAGTAAATG  541
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACAGATAAATAATGTAAAAATTACATTACTTTGTTCACCAAGTAAATG  544

seq1  AAAACCATGTTTTCTCTGTTAACTTTAATCAGCACACTAAAGCAAGTGTG  591
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACCATGTTTTCTCTGTTAACTTTAATCAGCACACTAAAGCAAGTGTG  594

seq1  GCGCCAAAGAGTTTCTGTGCAGCTATCAGAGAGTAGGTCAGTATGTGTAA  641
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGCCAAAGAGTTTCTGTGCAGCTATCAGAGAGTAGGTCAGTATGTGTAA  644

seq1  GTTTTGAAGTAAAAGGATTAAAACCGGTGAATGGTTTATTCAAGTATTCA  691
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTGAAGTAAAAGGATTAAAACCGGTGAATGGTTTATTCAAGTATTCA  694

seq1  AGCAGGTAAGTAAAAGATACCAAATAATATACAACACAGGAACCATTCTT  741
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGGTAAGTAAAAGATACCAAATAATATACAACACAGGAACCATTCTT  744

seq1  GGAGAGGTGCTGATCTGCCATGACTAGCTATGGTGAACTCAGGGTTAACA  791
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAGGTGCTGATCTGCCATGACTAGCTATGGTGAACTCAGGGTTAACA  794

seq1  CTGAGAAGTACACATTAGTCTGGAGAGAGCTGCCCATTTCCTAAGGGAAA  841
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGAAGTACACATTAGTCTGGAGAGAGCTGCCCATTTCCTAAGGGAAA  844

seq1  ACGAACCTCATTTCTTACTAATTTCATGTAGAAACTCCACATCACTAACA  891
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGAACCTCATTTCTTACTAATTTCATGTAGAAACTCCACATCACTAACA  894

seq1  AGCCATTATTCATCACTTTGATTTGGCCCTATTAAAATTCTCAAGAGTAT  941
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCATTATTCATCACTTTGATTTGGCCCTATTAAAATTCTCAAGAGTAT  944

seq1  TTCTTGATTCATGATAGCTTTCTAATACTGCCCAAATAAACTTAGCCTTT  991
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTGATTCATGATAGCTTTCTAATACTGCCCAAATAAACTTAGCCTTT  994

seq1  AGTAAACCTAAGATCACAGGAGTCGATGCACATTCTGCATGCACAACAAA  1041
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAAACCTAAGATCACAGGAGTCGATGCACATTCTGCATGCACAACAAA  1044

seq1  AAATGCAAACAACCAGCAACTCAAAATTCCACTAAGATCTGTTGGTGAAG  1091
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGCAAACAACCAGCAACTCAAAATTCCACTAAGATCTGTTGGTGAAG  1094

seq1  ATAACAGGTGAGAAAAATGCAAAGGTTCACATGAACGCAATTTCCAACCA  1141
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACAGGTGAGAAAAATGCAAAGGTTCACATGAACGCAATTTCCAACCA  1144

seq1  TTTAAAAGTTCAGTGGAGATTACACATGAATTC  1174
      |||||||||||||||||||||||||||||||||
seq2  TTTAAAAGTTCAGTGGAGATTACACATGAATTC  1177

seq1: chr11_61449731_61450574
seq2: B6Ng01-286L03.g_141_986

seq1  AAAGCCCCATGGCTGTAAATGCTCAAGACTACACAGCCGGAAGCCACAAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCCCCATGGCTGTAAATGCTCAAGACTACACAGCCGGAAGCCACAAG  50

seq1  GTGGTCAACTGGGAACACCGGTGTTAAGAACAGGTCACCTCGCTAGGAGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTCAACTGGGAACACCGGTGTTAAGAACAGGTCACCTCGCTAGGAGC  100

seq1  TGTTGGCCACAGAGACCCTAGGAGCCCTCAAACAATAAAGGCTATTGCCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGGCCACAGAGACCCTAGGAGCCCTCAAACAATAAAGGCTATTGCCA  150

seq1  CAGTGGGCTGCATTCCAGGCCTGAATGGTGACATCCTATTGCTGAAGGGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGGGCTGCATTCCAGGCCTGAATGGTGACATCCTATTGCTGAAGGGG  200

seq1  CTGTACATTTTGGCTGCTGACTTGGAGAATTAAAGGCAGGGCTGGGTCCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTACATTTTGGCTGCTGACTTGGAGAATTAAAGGCAGGGCTGGGTCCA  250

seq1  AAGTCTCTCCTTCCTGAGAGCAACTCCTGGAGTGCCAGAGTCCCCACTAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCTCTCCTTCCTGAGAGCAACTCCTGGAGTGCCAGAGTCCCCACTAA  300

seq1  GAATGCTGGGGAGGATTAAGGCCCAAAGTCCTACTCAGCTGTGGATCCTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGCTGGGGAGGATTAAGGCCCAAAGTCCTACTCAGCTGTGGATCCTG  350

seq1  CATGCTTCGTGATAGAAATGTCAGACAAGACGTGTCGGCTAGTACAATAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCTTCGTGATAGAAATGTCAGACAAGACGTGTCGGCTAGTACAATAG  400

seq1  TGGACAGGTGGTTATAGCCAGACCCAACTTTCTGAGTGGACTCAAGGCCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGACAGGTGGTTATAGCCAGACCCAACTTTCTGAGTGGACTCAAGGCCA  450

seq1  GTCACAGGTGGGGAGTCACATCTAGTACCAGGAAATTAGACAACTGTGGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCACAGGTGGGGAGTCACATCTAGTACCAGGAAATTAGACAACTGTGGG  500

seq1  CACCAGTGTTTTGTAGTTGGAGAAATACGAACAACCCCCAACCACCATGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCAGTGTTTTGTAGTTGGAGAAATACGAACAACCCCCAACCACCATGG  550

seq1  TCTGGAGATAGAGTGGATAGGCAGGCAAGGAGAGCATTGTCAGTCGTCGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGAGATAGAGTGGATAGGCAGGCAAGGAGAGCATTGTCAGTCGTCGA  600

seq1  TGCTACCTCATCCCTGGCTCAGGGACCCTGTAGAAGGTGGAGCTAGAAAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTACCTCATCCCTGGCTCAGGGACCCTGTAGAAGGTGGAGCTAGAAAG  650

seq1  AATGCACTGTAAGTGACCGTCCTCTGAGTCAAGAGACCATCACTTGGGGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCACTGTAAGTGACCGTCCTCTGAGTCAAGAGACCATCACTTGGGGG  700

seq1  AGTTCAGCTATGCTCCCTTACAAAGATCATTCTAATCTGGGCTGGTTGAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCAGCTATGCTCCCTTACAAAGATCATTCTAATCTGGGCTGGTTGAC  750

seq1  TGCTTACAGTCTCTCATGGAGGCACAGGGAGGGTCACAAGACCCTCATCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTACAGTCTCTCATGGAGGCACAGGGAGGGTCACAAGACCCTCATCT  800

seq1  GAGTGAGTATCCAGCAGTCACATATTATATA--GACTTGTAGGGCC  844
      |||||||||||||||||||||||||||||||   || |||||||||
seq2  GAGTGAGTATCCAGCAGTCACATATTATATAAGAACCTGTAGGGCC  846