BAC Information

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BAC

Clone NameB6Ng01-287C16
Chromosome11 (Build37)
Map Location 106,062,637 - 106,229,517
singlet/doubletdoublet
Overlap gene2610204L23Rik, Ddx42, Ftsj3, Psmc5, Smarcd2, Tcam1, Gh, Cd79b, Scn4a
Upstream geneTlk2, Mrc2, Rnf190, EG666807, Tanc2, LOC667737, Cyb561, Ace, EG217246, Kcnh6, Wdr68, Ccdc44, Map3k3, Limd2, 2610019A05Rik
Downstream gene2310007L24Rik, Icam2, Ern1, LOC100041277, Tex2, Pecam1, Gm885, Polg2, Ddx5, Ccdc45, Smurf2, LOC666873, Kpna2, 1810010H24Rik, Bptf, LOC100042899, Nol11, LOC671692, Pitpnc1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-287C16.bB6Ng01-287C16.g
ACCGA085163GA085164
length1,1351,111
definitionB6Ng01-287C16.b B6Ng01-287C16.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(106,062,637 - 106,063,788)(106,228,393 - 106,229,517)
sequence
gaattcactcctcccgagtgctgggattaaagatgtgcaccaccactgcc
caactttgtgcacatttctacagagaattatagtagacagtagggtagaa
ataggcatgtagataattcaaaacaaaacagcagttttggggcaatctca
caaaaacctcaaccctagacaaagaactgcaggcagctgaggaactctga
tagcaggagaaccagccttcccagataagagcatcaactggttacccagt
acccaaagggtcagttctgaaaactgcacacagctaacagcagacagact
caatagactgtatttatatagttaaggtatgcaagagcatgcacacgcgc
acgcgcacgcacgcgcgcacacacacacacacacacacacacacacgtca
ctacaacaaagaaaaagaagccctaagtttgaaagagagctgtggaaagg
aactaatatatgggaggtttggaagggaggacaaggaagagggaaatggt
ataattgtaatctcgaaacagggatggggatttagctcagtggtagagcg
catgcctagcaagcacaaggccctgtacctgtcctcagctctgagagaga
gaaaaaaaaaaacgacaaaataatcttaaaacataaaaccacataataga
gaagctgagcccagcagccgagcctctgagtgtctcacttccagcctgcg
ctgtttctcagggtcctcctcgttcatgatccgctccttctcagctcttt
ttttctcctcacgccgagactgtgcagcctcctgtctctgcacatgtgtc
agcttcagaaagttctcttccacacgagcccggttcttatctgctttttg
tttccccttcccagaaaacaaagacttcataaggaaccaattctaatgca
caggagaaacccaacttagcatggctcaactcctcccctttgacactttc
aagtcaccagcaaaggctgggtcgctgcagtcactgacagctgctgccat
caagggaaaaccaacaataatagggctgttgtaagaaagaactagggact
actctctgtgagtcggacttttagctttatcgatggatcattcaccatgc
tcaatcaggttagcaagactcatatccttcggtat
gaattctgtgtctgacgatgtatgggcaaggaggagtctaggaaacacac
cagcgaaagccgtttgtccctgcctacctgctctcactgggcgacttcta
ccactgcagttgtccttgagtgcggcgggcatgtggttctgtgttagctg
gtggtacgctggggacttgtgagcatgtgagtggtgctgacgggatgctc
aggggtggagatgtatttccagagtcctacccactgggactgcaagatgg
aacgtcagagccttcctcctcacctgaaccctaggtagaaactgaggtgc
catcagccataatatgattaacccaataatccttgatacaaaataggaag
cttagctccattcatctcctatacgtttttcctgccatctgcaacaaagt
atccatgcgaccattctacttcagctgtgactggtgcccagatcctcaca
gtactcagctcacacaactgaatatctcagccttgctccctcatatacgg
tgaccccctcccattactctaatccctcatttaagaacatcctaccccat
agagctgtgaccagaaagaggcagagaccaaaggggcagggatgtatgtg
gaagcgacagatgacgccaagacacagatgttcttacgcctgtgtcaccg
ttctgttgctgtgaagggacaccatgcccattataaaagaaaacagtttc
ggagccttgaaaacgtggtgagtgtggtagcaggcaggcagacatggcgc
tgaagacggagctgggagttctacctcctagtccacaggcagcaggaaga
gagagactctgaccttggaatgggtttttgaaacctcaaagccaacactt
gttggaagaggatgtcacttcctcctcatccttctaatcctttcaatagt
gccactccctggtgactaagcactcaactctatgagcctatgggggccat
actcatgcaaaccaccacatcacccacccagtacccacaacagtggccat
gtcctgtctagggacagtgactagtgacctgagaccacagcagctagagt
gagagcacgaccttgatactggggagccatctgtgcagagtctgagaaga
cctgtgttttc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_106062637_106063788
seq2: B6Ng01-287C16.b_42_1176

seq1  GAATTCACTCCTCCCGAGTGCTGGGATTAAAGATGTGCACCACCACTGCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTCCTCCCGAGTGCTGGGATTAAAGATGTGCACCACCACTGCC  50

seq1  CAACTTTGTGCACATTTCTACAGAGAATTATAGTAGACAGTAGGGTAGAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTTTGTGCACATTTCTACAGAGAATTATAGTAGACAGTAGGGTAGAA  100

seq1  ATAGGCATGTAGATAATTCAAAACAAAACAGCAGTTTTGGGGCAATCTCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGGCATGTAGATAATTCAAAACAAAACAGCAGTTTTGGGGCAATCTCA  150

seq1  CAAAAACCTCAACCCTAGACAAAGAACTGCAGGCAGCTGAGGAACTCTGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAACCTCAACCCTAGACAAAGAACTGCAGGCAGCTGAGGAACTCTGA  200

seq1  TAGCAGGAGAACCAGCCTTCCCAGATAAGAGCATCAACTGGTTACCCAGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCAGGAGAACCAGCCTTCCCAGATAAGAGCATCAACTGGTTACCCAGT  250

seq1  ACCCAAAGGGTCAGTTCTGAAAACTGCACACAGCTAACAGCAGACAGACT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCAAAGGGTCAGTTCTGAAAACTGCACACAGCTAACAGCAGACAGACT  300

seq1  CAATAGACTGTATTTATATAGTTAAGGTATGCAAGAGCATGCACACGCGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATAGACTGTATTTATATAGTTAAGGTATGCAAGAGCATGCACACGCGC  350

seq1  ACGCGCACGCACGCGCGCACACACACACACACACACACACACACACGTCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGCGCACGCACGCGCGCACACACACACACACACACACACACACACGTCA  400

seq1  CTACAACAAAGAAAAAGAAGCCCTAAGTTTGAAAGAGAGCTGTGGAAAGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACAACAAAGAAAAAGAAGCCCTAAGTTTGAAAGAGAGCTGTGGAAAGG  450

seq1  AACTAATATATGGGAGGTTTGGAAGGGAGGACAAGGAAGAGGGAAATGGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTAATATATGGGAGGTTTGGAAGGGAGGACAAGGAAGAGGGAAATGGT  500

seq1  ATAATTGTAATCTCGAAACAGGGATGGGGATTTAGCTCAGTGGTAGAGCG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATTGTAATCTCGAAACAGGGATGGGGATTTAGCTCAGTGGTAGAGCG  550

seq1  CATGCCTAGCAAGCACAAGGCCCTGTACCTGTCCTCAGCTCTGAGAGAGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCCTAGCAAGCACAAGGCCCTGTACCTGTCCTCAGCTCTGAGAGAGA  600

seq1  GAAAAAAAAAAACGACAAAATAATCTTAAAACATAAAACCACATAATAGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAAAAAAAACGACAAAATAATCTTAAAACATAAAACCACATAATAGA  650

seq1  GAAGCTGAGCCCAGCAGCCGAGCCTCTGAGTGTCTCACTTCCAGCCTGCG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCTGAGCCCAGCAGCCGAGCCTCTGAGTGTCTCACTTCCAGCCTGCG  700

seq1  CTGTTTCTCAGGGTCCTCCTCGTTCATGATCCGCTCCTTCTCAGCTCTTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTTCTCAGGGTCCTCCTCGTTCATGATCCGCTCCTTCTCAGCTCTTT  750

seq1  TTTTCTCCTCACGCCGAGACTGTGCAGCCTCCTGTCTCTGCACATGTGTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTCCTCACGCCGAGACTGTGCAGCCTCCTGTCTCTGCACATGTGTC  800

seq1  AGCTTCAGAAAGTTCTCTTCCACACGAGCCCGGTTCTTATCTGCTTTTTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTCAGAAAGTTCTCTTCCACACGAGCCCGGTTCTTATCTGCTTTTTG  850

seq1  TTTCCCCTTCCCCAGAAAACAAAGACTTCATAAGGAACCAATTCTAATGC  900
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCCCTT-CCCAGAAAACAAAGACTTCATAAGGAACCAATTCTAATGC  899

seq1  ACAGGAGAAAACCCAACTTAGCATGGCTCAACTCCTCCCCTTTGACACTT  950
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGAG-AAACCCAACTTAGCATGGCTCAACTCCTCCCCTTTGACACTT  948

seq1  TCAAGTCAACCAGCAAAGGCTGGGTCGCTGCAGTCACTGACAGCTGCTGC  1000
      ||||||| ||||||||||||||||||||||||||||||||||||||||| 
seq2  TCAAGTC-ACCAGCAAAGGCTGGGTCGCTGCAGTCACTGACAGCTGCTG-  996

seq1  CCATCAGGGGAAAACCCAACAATAATAGGGGCTGGTTTGTAAGAAAGGAC  1050
      |||||| ||||||| |||||||||||| ||||||  ||||||||||| ||
seq2  CCATCAAGGGAAAA-CCAACAATAATA-GGGCTG--TTGTAAGAAAGAAC  1042

seq1  TAGGGACTTACTTCTCTGTTGAGTCGGAACTTTTTGGCTTTATCGATAGA  1100
      ||||||| ||| |||||| |||||||||   |||| ||||||||||| | 
seq2  TAGGGAC-TAC-TCTCTG-TGAGTCGGA--CTTTTAGCTTTATCGAT-GG  1086

seq1  ATAAATCACCATGTTC-ATCAGGGGTAGCAAAGACTCCATATCCTTTGGG  1149
      || | |||||||| || |||| || |||| |||||| ||||||| || ||
seq2  ATCATTCACCATGCTCAATCA-GGTTAGC-AAGACT-CATATCC-TTCGG  1132

seq1  TAT  1152
      |||
seq2  TAT  1135

seq1: chr11_106228393_106229517
seq2: B6Ng01-287C16.g_65_1175 (reverse)

seq1  GAAAACACAGTTTCTTCTCAGACTCTTCACAGATGGCTTCCCCAAGGCCA  50
      ||||||||||  |||||||||||||| |||||||||| ||||||      
seq2  GAAAACACAG-GTCTTCTCAGACTCTGCACAGATGGC-TCCCCA----GT  44

seq1  TTCAGGGTCCTTCTCTCACTTCTAGCCTTGCTGTGGTCTCAGGTCACTAG  100
       ||| |||| | ||||||| ||||||  ||||||||||||||||||||||
seq2  ATCAAGGTCGTGCTCTCAC-TCTAGC--TGCTGTGGTCTCAGGTCACTAG  91

seq1  TCACTGTCCCCTAGACAGGACATTGCCACTTGTTTGTGGGTACTGGGTGG  150
      ||||||| ||||||||||||||| ||||||   |||||||||||||||||
seq2  TCACTGT-CCCTAGACAGGACATGGCCACT--GTTGTGGGTACTGGGTGG  138

seq1  GTGATGTGGTGGTTTGCATGAGTATGGCCCCCATAGGCTCATAGAGTTGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGATGTGGTGGTTTGCATGAGTATGGCCCCCATAGGCTCATAGAGTTGA  188

seq1  GTGCTTAGTCACCAGGGAGTGGCACTATTTGAAAGGATTAGAAGGATGAG  250
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  GTGCTTAGTCACCAGGGAGTGGCACTA-TTGAAAGGATTAGAAGGATGAG  237

seq1  GAGGAAGTGACATCCTTCTTCCAACAAGTGTTGGCTTTGAGGTTTCAAAA  300
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  GAGGAAGTGACATCC-TCTTCCAACAAGTGTTGGCTTTGAGGTTTCAAAA  286

seq1  ACCCATTCCAAGGTCAGAGTCTCTCTCTTCCTGCTGCCTGTGGACTAGGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCATTCCAAGGTCAGAGTCTCTCTCTTCCTGCTGCCTGTGGACTAGGA  336

seq1  GGTAGAACTCCCAGCTCCGTCTTCAGCGCCATGTCTGCCTGCCTGCTACC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAGAACTCCCAGCTCCGTCTTCAGCGCCATGTCTGCCTGCCTGCTACC  386

seq1  ACACTCACCACGTTTTCAAGGCTCCGAAACTGTTTTCTTTTATAATGGGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTCACCACGTTTTCAAGGCTCCGAAACTGTTTTCTTTTATAATGGGC  436

seq1  ATGGTGTCCCTTCACAGCAACAGAACGGTGACACAGGCGTAAGAACATCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTGTCCCTTCACAGCAACAGAACGGTGACACAGGCGTAAGAACATCT  486

seq1  GTGTCTTGGCGTCATCTGTCGCTTCCACATACATCCCTGCCCCTTTGGTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTCTTGGCGTCATCTGTCGCTTCCACATACATCCCTGCCCCTTTGGTC  536

seq1  TCTGCCTCTTTCTGGTCACAGCTCTATGGGGTAGGATGTTCTTAAATGAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCCTCTTTCTGGTCACAGCTCTATGGGGTAGGATGTTCTTAAATGAG  586

seq1  GGATTAGAGTAATGGGAGGGGGTCACCGTATATGAGGGAGCAAGGCTGAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTAGAGTAATGGGAGGGGGTCACCGTATATGAGGGAGCAAGGCTGAG  636

seq1  ATATTCAGTTGTGTGAGCTGAGTACTGTGAGGATCTGGGCACCAGTCACA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTCAGTTGTGTGAGCTGAGTACTGTGAGGATCTGGGCACCAGTCACA  686

seq1  GCTGAAGTAGAATGGTCGCATGGATACTTTGTTGCAGATGGCAGGAAAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGAAGTAGAATGGTCGCATGGATACTTTGTTGCAGATGGCAGGAAAAA  736

seq1  CGTATAGGAGATGAATGGAGCTAAGCTTCCTATTTTGTATCAAGGATTAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTATAGGAGATGAATGGAGCTAAGCTTCCTATTTTGTATCAAGGATTAT  786

seq1  TGGGTTAATCATATTATGGCTGATGGCACCTCAGTTTCTACCTAGGGTTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTTAATCATATTATGGCTGATGGCACCTCAGTTTCTACCTAGGGTTC  836

seq1  AGGTGAGGAGGAAGGCTCTGACGTTCCATCTTGCAGTCCCAGTGGGTAGG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGAGGAGGAAGGCTCTGACGTTCCATCTTGCAGTCCCAGTGGGTAGG  886

seq1  ACTCTGGAAATACATCTCCACCCCTGAGCATCCCGTCAGCACCACTCACA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTGGAAATACATCTCCACCCCTGAGCATCCCGTCAGCACCACTCACA  936

seq1  TGCTCACAAGTCCCCAGCGTACCACCAGCTAACACAGAACCACATGCCCG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCACAAGTCCCCAGCGTACCACCAGCTAACACAGAACCACATGCCCG  986

seq1  CCGCACTCAAGGACAACTGCAGTGGTAGAAGTCGCCCAGTGAGAGCAGGT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGCACTCAAGGACAACTGCAGTGGTAGAAGTCGCCCAGTGAGAGCAGGT  1036

seq1  AGGCAGGGACAAACGGCTTTCGCTGGTGTGTTTCCTAGACTCCTCCTTGC  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAGGGACAAACGGCTTTCGCTGGTGTGTTTCCTAGACTCCTCCTTGC  1086

seq1  CCATACATCGTCAGACACAGAATTC  1125
      |||||||||||||||||||||||||
seq2  CCATACATCGTCAGACACAGAATTC  1111