BAC Information

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BAC

Clone NameB6Ng01-288E19
Chromosome11 (Build37)
Map Location 119,251,339 - 119,399,032
singlet/doubletdoublet
Overlap geneLOC672511, Rnf213, A730011L01Rik
Upstream geneLgals3bp, Cant1, C1qtnf1, D230014K01Rik, D11Bwg0517e, Enpp7, Cbx2, Cbx8, Cbx4, Tbc1d16, Ccdc40, Gaa, Eif4a3, Card14, Sgsh, Slc26a11
Downstream geneNptx1, 4932417H02Rik, Chmp6, Baiap2, Aatk, Azi1, 2410002I01Rik, 1810043H04Rik, 1810073N04Rik, 2810410L24Rik, LOC100042332, LOC100043384, LOC100043389, Bahcc1, Actg1, Fscn2, 2310003H01Rik, Nploc4, Tspan10, Pde6g, 1810049H13Rik, 3110023B02Rik, 2600005N12Rik, Hgs, Mrpl12, Slc25a10, LOC667716, Gcgr
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-288E19.bB6Ng01-288E19.g
ACCGA085997GA085998
length1,109853
definitionB6Ng01-288E19.b B6Ng01-288E19.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(119,397,926 - 119,399,032)(119,251,339 - 119,252,190)
sequence
gaattccatgtgcccttcctttgaagttcctgggccactttgttctcata
tacacaaaataaaagatgtgggtaactgcgagtccttgatctagggaaaa
ccggacattcctgaccaagcttggctctatgtaggtatagagctttgaac
acaatggccaggatccaagtcctggcattatagatcctagaatgcttaag
aacatgaggccaggggccagacaagcccaaagcttagctgccccctccct
gtatgtgcacaggtacacattgtgtttgcagaagggactggctactctgg
ctacttgctggcctttccagggtttcctgccagtgtctttggttccctgg
ccaggacacagaagccatggtttatttcagaccactgagtagaagactta
gagggggagtctggcctcatagcatagcaggcagataatcctccctggac
cctcaagcagctcccggccacacactacacttccatcattaaagcctttt
tctgtttttgttttctgagccagggtttctctgtgtagccctggctgttc
tgggactcagcctgtagaccaggatggcctcaaactcagaattctgcctg
tttcaaccttccaactaatgctggcgttgtaaactactcattcaaaacta
caaacatgtgctagtggcacagccctttaaccacagaactttatttacag
cctttaatcccaggcagaggcaggcagatctgagtttaaggccagcctgg
tctacaaagtaggacagccaggcctaccagtaccagagagaccctgtctc
aaaaaccaaaacaaaaaagcaaatacaggcatgatggcacaggccttggg
aggcagaggcagccaaatatctgagttcaaggccagcttggtctacatga
gagttttaggccaaccagagccacatagtgagatcttgtcttaaaaaaca
ccaacccccccctccccacacacacacacacacacacaacctaagaagga
atctacttagttgtcaacctgatcctggcacactggccagtgacacccag
gtcagaagagttaaaaccagcctcaggggagtggtggagcccttagccac
aggaggcct
gaattccagcaaggctgtgcgccaaggaggcggaggggcggcgccggccc
cgtgacccctcatcgaagcgcgccagtccgcgcgggcgcatgggcactgc
aggtgcgagcgaggggcttcggggttccaggatctggtgctgggctagga
gcgggatgcaagtccaggggcagtgacgcgaggcctagggtgcgggatgt
gggtctcagggacgcgcagggaccggggtgcaaggtcccgttgggcaggg
cgcgggtgtttcgggccaagggtccacggggcgacatgcggagctctgga
tgctgtttcattgggtgccggtcctgctagggaagagtgggccggcggct
catggcccctgtggtcacagtccctgaatggtgcctgcgtcctgatgcgc
cggcgcccagcggccacttccttcatgttccaagtttcggtttcactgca
ggcagccggtccagcctggccctgagtctccgaccccattaactctcggg
ttgcggacagcgctaggtcggccctgctccccagcaacacccaggaaggt
cggggacccccaacctacacaaccccgtgtcctcgcgtaaagcggtccca
ggctccgccccggaatctgctctcaccaactgcagcagaacttttgcgag
ccagatgtctgccctcaccaactgaagccagaactttttcgtgccaggcg
tctgtgcccagggcgctgatcttacctaggtcaaagccgggagcctcccc
tgtccccgaagctgcagcgagaggtgcgctcgctcgcaatgggctagccc
aaacccatctgcttttttcttagtctagcccgggcggggggtgggagggg
agg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_119397926_119399032
seq2: B6Ng01-288E19.b_44_1152 (reverse)

seq1  AGGCCT-CTGTGGCTAA-GGCT-CACCACTCCCCTGA-GCT-GTTTTTAC  45
      |||||| |||||||||| |||| |||||||||||||| ||| ||||| ||
seq2  AGGCCTCCTGTGGCTAAGGGCTCCACCACTCCCCTGAGGCTGGTTTTAAC  50

seq1  TCTTCTGACCTGGGTGTCACTGGCCAGTGTGCCAGGATCAGGTTTGACAA  95
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  TCTTCTGACCTGGGTGTCACTGGCCAGTGTGCCAGGATCAGG-TTGACAA  99

seq1  CTAAGTAAGATTCCTTC-TAGGTTGTGTGTGTGTGTGTGTGTG-GGGGGG  143
      |||||| |||||||||| ||||||||||||||||||||||||| |||| |
seq2  CTAAGT-AGATTCCTTCTTAGGTTGTGTGTGTGTGTGTGTGTGTGGGGAG  148

seq1  GGGGGGGTTGGTGTTTTTTAAGACAAGATCTCACTATGTGGCTCTGGTTG  193
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGGGGTTGGTGTTTTTTAAGACAAGATCTCACTATGTGGCTCTGGTTG  198

seq1  GCCTAAAACTCCTCATGTAGACCAAGCTGGCCTTGAACTCAGATATTTGG  243
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  GCCTAAAACT-CTCATGTAGACCAAGCTGGCCTTGAACTCAGATATTTGG  247

seq1  CTGCCTCTGCCTCCCAAGGCCTGTGCCATCATGCCTGTATTTTGCTTTTT  293
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  CTGCCTCTGCCTCCCAAGGCCTGTGCCATCATGCCTGTA-TTTGCTTTTT  296

seq1  TGTTTTGGTTTTTTGAGACAGGGTCTCTCTGGTACTGGTAGGCCTGGCTG  343
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTGG-TTTTTGAGACAGGGTCTCTCTGGTACTGGTAGGCCTGGCTG  345

seq1  TCCTACTTTGTAGACCAGGCTGGCCTTAAACTCAGATCTGCCTGCCTCTG  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTACTTTGTAGACCAGGCTGGCCTTAAACTCAGATCTGCCTGCCTCTG  395

seq1  CCTGGGATTAAAGGCTGTAAATAAAGTTCTGTGGTTAAAGGGCTGTGCCA  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGGATTAAAGGCTGTAAATAAAGTTCTGTGGTTAAAGGGCTGTGCCA  445

seq1  CTAGCACATGTTTGTAGTTTTGAATGAGTAGTTTACAACGCCAGCATTAG  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGCACATGTTTGTAGTTTTGAATGAGTAGTTTACAACGCCAGCATTAG  495

seq1  TTGGAAGGTTGAAACAGGCAGAATTCTGAGTTTGAGGCCATCCTGGTCTA  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGAAGGTTGAAACAGGCAGAATTCTGAGTTTGAGGCCATCCTGGTCTA  545

seq1  CAGGCTGAGTCCCAGAACAGCCAGGGCTACACAGAGAAACCCTGGCTCAG  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCTGAGTCCCAGAACAGCCAGGGCTACACAGAGAAACCCTGGCTCAG  595

seq1  AAAACAAAAACAGAAAAAGGCTTTAATGATGGAAGTGTAGTGTGTGGCCG  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACAAAAACAGAAAAAGGCTTTAATGATGGAAGTGTAGTGTGTGGCCG  645

seq1  GGAGCTGCTTGAGGGTCCAGGGAGGATTATCTGCCTGCTATGCTATGAGG  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGCTGCTTGAGGGTCCAGGGAGGATTATCTGCCTGCTATGCTATGAGG  695

seq1  CCAGACTCCCCCTCTAAGTCTTCTACTCAGTGGTCTGAAATAAACCATGG  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGACTCCCCCTCTAAGTCTTCTACTCAGTGGTCTGAAATAAACCATGG  745

seq1  CTTCTGTGTCCTGGCCAGGGAACCAAAGACACTGGCAGGAAACCCTGGAA  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTGTGTCCTGGCCAGGGAACCAAAGACACTGGCAGGAAACCCTGGAA  795

seq1  AGGCCAGCAAGTAGCCAGAGTAGCCAGTCCCTTCTGCAAACACAATGTGT  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCAGCAAGTAGCCAGAGTAGCCAGTCCCTTCTGCAAACACAATGTGT  845

seq1  ACCTGTGCACATACAGGGAGGGGGCAGCTAAGCTTTGGGCTTGTCTGGCC  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGTGCACATACAGGGAGGGGGCAGCTAAGCTTTGGGCTTGTCTGGCC  895

seq1  CCTGGCCTCATGTTCTTAAGCATTCTAGGATCTATAATGCCAGGACTTGG  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGCCTCATGTTCTTAAGCATTCTAGGATCTATAATGCCAGGACTTGG  945

seq1  ATCCTGGCCATTGTGTTCAAAGCTCTATACCTACATAGAGCCAAGCTTGG  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTGGCCATTGTGTTCAAAGCTCTATACCTACATAGAGCCAAGCTTGG  995

seq1  TCAGGAATGTCCGGTTTTCCCTAGATCAAGGACTCGCAGTTACCCACATC  1043
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGAATGTCCGGTTTTCCCTAGATCAAGGACTCGCAGTTACCCACATC  1045

seq1  TTTTATTTTGTGTATATGAGAACAAAGTGGCCCAGGAACTTCAAAGGAAG  1093
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATTTTGTGTATATGAGAACAAAGTGGCCCAGGAACTTCAAAGGAAG  1095

seq1  GGCACATGGAATTC  1107
      ||||||||||||||
seq2  GGCACATGGAATTC  1109

seq1: chr11_119251339_119252190
seq2: B6Ng01-288E19.g_69_921

seq1  GAATTCCAGCAAGGCTGTGCGCCAAGGAGGCGGAGGGGCGGCGCCGGCCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGCAAGGCTGTGCGCCAAGGAGGCGGAGGGGCGGCGCCGGCCC  50

seq1  CGTGACCCCTCATCGAAGCGCGCCAGTCCGCGCGGGCGCATGGGCACTGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGACCCCTCATCGAAGCGCGCCAGTCCGCGCGGGCGCATGGGCACTGC  100

seq1  AGGTGCGAGCGAGGGGCTTCGGGGTTCCAGGATCTGGTGCTGGGCTAGGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGCGAGCGAGGGGCTTCGGGGTTCCAGGATCTGGTGCTGGGCTAGGA  150

seq1  GCGGGATGCAAGTCCAGGGGCAGTGACGCGAGGCCTAGGGTGCGGGATGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGGGATGCAAGTCCAGGGGCAGTGACGCGAGGCCTAGGGTGCGGGATGT  200

seq1  GGGTCTCAGGGACGCGCAGGGACCGGGGTGCAAGGTCCCGTTGGGCAGGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTCTCAGGGACGCGCAGGGACCGGGGTGCAAGGTCCCGTTGGGCAGGG  250

seq1  CGCGGGTGTTTCGGGCCAAGGGTCCACGGGGCGACATGCGGAGCTCTGGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCGGGTGTTTCGGGCCAAGGGTCCACGGGGCGACATGCGGAGCTCTGGA  300

seq1  TGCTGTTTCATTGGGTGCCGGTCCTGCTAGGGAAGAGTGGGCCGGCGGCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGTTTCATTGGGTGCCGGTCCTGCTAGGGAAGAGTGGGCCGGCGGCT  350

seq1  CATGGCCCCTGTGGTCACAGTCCCTGAATGGTGCCTGCGTCCTGATGCGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGCCCCTGTGGTCACAGTCCCTGAATGGTGCCTGCGTCCTGATGCGC  400

seq1  CGGCGCCCAGCGGCCACTTCCTTCATGTTCCAAGTTTCGGTTTCACTGCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGCGCCCAGCGGCCACTTCCTTCATGTTCCAAGTTTCGGTTTCACTGCA  450

seq1  GGCAGCCGGTCCAGCCTGGCCCTGAGTCTCCGACCCCATTAACTCTCGGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGCCGGTCCAGCCTGGCCCTGAGTCTCCGACCCCATTAACTCTCGGG  500

seq1  TTGCGGACAGCGCTAGGTCGGCCCTGCTCCCCAGCAACACCCAGGAAGGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCGGACAGCGCTAGGTCGGCCCTGCTCCCCAGCAACACCCAGGAAGGT  550

seq1  CGGGGACCCCCAACCTACACAACCCCGTGTCCTCGCGTAAAGCGGTCCCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGGGACCCCCAACCTACACAACCCCGTGTCCTCGCGTAAAGCGGTCCCA  600

seq1  GGCTCCGCCCCGGAATCTGCTCTCACCAACTGCAGCAGAACTTTTGCGAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCCGCCCCGGAATCTGCTCTCACCAACTGCAGCAGAACTTTTGCGAG  650

seq1  CCAGATGTCTGCCCTCACCAACTGAAGCCAGAACTTTTTCGTGCCAGGCG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGATGTCTGCCCTCACCAACTGAAGCCAGAACTTTTTCGTGCCAGGCG  700

seq1  TCTGTGCCCAGGGCGCTGATCTTACCTAGGTCAAAGCCGGGAGCCTCCCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTGCCCAGGGCGCTGATCTTACCTAGGTCAAAGCCGGGAGCCTCCCC  750

seq1  TGTCCCCGAAGCTGCAGCGAGAGGTGCGCTCGCTCGCAATGGGCTAGCCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCCCGAAGCTGCAGCGAGAGGTGCGCTCGCTCGCAATGGGCTAGCCC  800

seq1  AAACCCATCTGCTTTTTTCTTAGTCTAGCCCGGGCGGGGGGT-GGAGGGG  849
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  AAACCCATCTGCTTTTTTCTTAGTCTAGCCCGGGCGGGGGGTGGGAGGGG  850

seq1  AGG  852
      |||
seq2  AGG  853