BAC Information

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BAC

Clone NameB6Ng01-289H17
Chromosome11 (Build37)11 (Build37)
Map Location 56,350,562 - 56,351,701112,590,907 - 112,591,259
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneGlra1, Nmur2, LOC100040816, LOC624168
Downstream geneGria1, LOC667878, 1810073G14Rik, Mfap3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-289H17.bB6Ng01-289H17.g
ACCGA086870GA086871
length1,140197
definitionB6Ng01-289H17.b B6Ng01-289H17.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(56,350,562 - 56,351,701)(112,590,907 - 112,591,259)
sequence
gaattcttcattcacatgcttgtatgcatttccactccaatcatactaaa
attaacattaacaacaatgtgtcttttgcttcttttatttgctagggctg
gtacttgagacttttttgctcacaggcatatgcatggttaataactgata
ataaatagttttaactatacaggaagcatataattgagttaaaatacaaa
caatctcaaaacaaattaccagaacttctacattctcctttgcaaaataa
ttactgttacccttgtagaacgtagtcttcagttttgtttccctccaaat
gtttgagttacccctgtcccagcttcttctctcctaaatatctctctttg
ctgtagatggcccatcaaatatgcctgtacagttatatgctttgcatatg
tttatgtgtgtatacatacataggcattcgtaaaattttgagtaatattt
atccagtcttgctgtctacacaaatgaggccacattgacctttaaacact
tatctatgttgtttctgtagctgctatcattattcccatttaaccaacaa
aaaagtctgaggtaggtcctccctgaagacatcataactcaatattggcg
aattggatttaaacctagatcatacacctccaaaagtttgaccctaaaga
ctagtgttgtcctcccctttcagctcacttggctttcatttccaatggac
tttcgcctgggtaacagaaatcaggctccagcattagtgggtagaagaag
ggtccttagcaggggcacaggccctcattctttcagtccgtgaaaatgcc
ttctcacattacaaggacatggagccaaatgcttatagactactaagaca
ttgaattatattagagtcttccatattaaggagaaagggtagatctgggg
aaagtgctggctgagttttatgtgtttgcatgggttgtctaatcaagccc
taatggaagagttgctgaggaagtagtgttttgtaagtgtggttgattct
gtaatcagttattctttaagtaaaaagattgttttccacagtctctgggg
tctcctcagccagtgaagcccctgagaacagaattggatgttactctaag
gatgatacaggtccagcttgtaggtaacctcagctcttgc

cttagtttagattctctctctctctctctctctctctctctctatatata
tatatatatatatatatatatatatatatatgtgtgtgtgtgtgtgtgtg
tgtgtgtgtgtgtgtgtgtgagtgtatcttctctctgtgcatgtgtgtgt
ttgtgtgtgtacatgtatttatatatgcatatgtgtatgtgtgtgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_56350562_56351701
seq2: B6Ng01-289H17.b_45_1184 (reverse)

seq1  GCAAGAGCTGAGGGTACACTACCAGCTGGA-CTGTATTCATCCTTAGAGT  49
      ||||||||||||| ||| |||| ||||||| ||||| |||||||||||||
seq2  GCAAGAGCTGAGGTTAC-CTACAAGCTGGACCTGTA-TCATCCTTAGAGT  48

seq1  AACAT-CAATTCTGTTCTCAGGGGCTTTCAACTGGCTGGAGGAGACCCCA  98
      ||||| |||||||||||||||||||||   ||||||| ||||||||||||
seq2  AACATCCAATTCTGTTCTCAGGGGCTT--CACTGGCT-GAGGAGACCCCA  95

seq1  GAGACTGTGGAAAACAATCTTTTTACTTAAAG-ATAACTGATTACAGAAT  147
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  GAGACTGTGGAAAACAATCTTTTTACTTAAAGAATAACTGATTACAGAAT  145

seq1  CAACCACACTTACAAAACACTACTTCCTCAGCAACTCTTCCATTAGGGCT  197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACCACACTTACAAAACACTACTTCCTCAGCAACTCTTCCATTAGGGCT  195

seq1  TGATTAGACAA-CCATGCAAACACATAAAACTCAGCCAGCACTTTCCCCA  246
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  TGATTAGACAACCCATGCAAACACATAAAACTCAGCCAGCACTTTCCCCA  245

seq1  GATCTACCC-TTCTCCTTAATATGGAAGACTCTAATATAATTCAATGTCT  295
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  GATCTACCCTTTCTCCTTAATATGGAAGACTCTAATATAATTCAATGTCT  295

seq1  TAGTAGTCTATAAGCATTTGGCTCCATGTCCTTGTAATGTGAGAAGGCAT  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTAGTCTATAAGCATTTGGCTCCATGTCCTTGTAATGTGAGAAGGCAT  345

seq1  TTTCACGGACTGAAAGAATGAGGGCCTGTGCCCCTGCTAAGGACCCTTCT  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCACGGACTGAAAGAATGAGGGCCTGTGCCCCTGCTAAGGACCCTTCT  395

seq1  TCTACCCACTAATGCTGGAGCCTGATTTCTGTTACCCAGGCGAAAGTCCA  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACCCACTAATGCTGGAGCCTGATTTCTGTTACCCAGGCGAAAGTCCA  445

seq1  TTGGAAATGAAAGCCAAGTGAGCTGAAAGGGGAGGACAACACTAGTCTTT  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGAAATGAAAGCCAAGTGAGCTGAAAGGGGAGGACAACACTAGTCTTT  495

seq1  AGGGTCAAACTTTTGGAGGTGTATGATCTAGGTTTAAATCCAATTCGCCA  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTCAAACTTTTGGAGGTGTATGATCTAGGTTTAAATCCAATTCGCCA  545

seq1  ATATTGAGTTATGATGTCTTCAGGGAGGACCTACCTCAGACTTTTTTGTT  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTGAGTTATGATGTCTTCAGGGAGGACCTACCTCAGACTTTTTTGTT  595

seq1  GGTTAAATGGGAATAATGATAGCAGCTACAGAAACAACATAGATAAGTGT  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTAAATGGGAATAATGATAGCAGCTACAGAAACAACATAGATAAGTGT  645

seq1  TTAAAGGTCAATGTGGCCTCATTTGTGTAGACAGCAAGACTGGATAAATA  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAGGTCAATGTGGCCTCATTTGTGTAGACAGCAAGACTGGATAAATA  695

seq1  TTACTCAAAATTTTACGAATGCCTATGTATGTATACACACATAAACATAT  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTCAAAATTTTACGAATGCCTATGTATGTATACACACATAAACATAT  745

seq1  GCAAAGCATATAACTGTACAGGCATATTTGATGGGCCATCTACAGCAAAG  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAAGCATATAACTGTACAGGCATATTTGATGGGCCATCTACAGCAAAG  795

seq1  AGAGATATTTAGGAGAGAAGAAGCTGGGACAGGGGTAACTCAAACATTTG  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGATATTTAGGAGAGAAGAAGCTGGGACAGGGGTAACTCAAACATTTG  845

seq1  GAGGGAAACAAAACTGAAGACTACGTTCTACAAGGGTAACAGTAATTATT  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGAAACAAAACTGAAGACTACGTTCTACAAGGGTAACAGTAATTATT  895

seq1  TTGCAAAGGAGAATGTAGAAGTTCTGGTAATTTGTTTTGAGATTGTTTGT  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCAAAGGAGAATGTAGAAGTTCTGGTAATTTGTTTTGAGATTGTTTGT  945

seq1  ATTTTAACTCAATTATATGCTTCCTGTATAGTTAAAACTATTTATTATCA  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTAACTCAATTATATGCTTCCTGTATAGTTAAAACTATTTATTATCA  995

seq1  GTTATTAACCATGCATATGCCTGTGAGCAAAAAAGTCTCAAGTACCAGCC  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATTAACCATGCATATGCCTGTGAGCAAAAAAGTCTCAAGTACCAGCC  1045

seq1  CTAGCAAATAAAAGAAGCAAAAGACACATTGTTGTTAATGTTAATTTTAG  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGCAAATAAAAGAAGCAAAAGACACATTGTTGTTAATGTTAATTTTAG  1095

seq1  TATGATTGGAGTGGAAATGCATACAAGCATGTGAATGAAGAATTC  1140
      |||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGATTGGAGTGGAAATGCATACAAGCATGTGAATGAAGAATTC  1140


seq1: chr11_112590907_112591259
seq2: B6Ng01-289H17.g_121_269 (reverse)

seq1  CACACACACATACACATACATGTACACACACAAACACACATCTGCACCAC  50
                                                        
seq2  --------------------------------------------------  0

seq1  ACACATACATGTACACACACACACCTGCACCACACACTTACACATACATG  100
                                                        
seq2  --------------------------------------------------  0

seq1  TACACACACAAACACACATCTGCACCACACACATACACATACATGCACAC  150
                                                        
seq2  --------------------------------------------------  0

seq1  CTGCAACACACATACATGGACACATACATACACACACCTGCACCACACAC  200
                                                 |||||||
seq2  -------------------------------------------CACACAC  7

seq1  ACATACACATA--CATGTACAAACACATGCACACCTGTACCACACATTCA  248
      |||||||||||  ||| || ||| ||||| ||||      |||| |  ||
seq2  ACATACACATATGCATATATAAATACATGTACAC-----ACACAAACACA  52

seq1  TACATACACACATACCTGCACCACACACACATACACACACACACACACAC  298
       |||| |||| | |          | | |||  |||||||||||||||||
seq2  CACATGCACAGAGA--------GAAGATACACTCACACACACACACACAC  94

seq1  ACACACACACACACACACACACATATATATATATATATATATATATATAT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACACACACACACACACATATATATATATATATATATATATATAT  144

seq1  ATATA  353
      |||||
seq2  ATATA  149


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