BAC Information

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BAC

Clone NameB6Ng01-290L17
Chromosome11 (Build37)
Map Location 115,730,275 - 115,919,374
singlet/doubletdoublet
Overlap geneRecql5, 2210020M01Rik, Sap30bp, Itgb4, Galk1, H3f3b, Unk
Upstream geneGprc5c, Cd300a, Cd300lb, Cd300c, 4732429D16Rik, Cd300d, LOC629970, LOC100043123, LOC100043125, Clm3, Cd300e, Cd300lf, Rab37, Slc9a3r1, Nat9, Tmem104, Grin2c, Fdxr, Fads6, Otop2, Ush1g, Otop3, C630004H02Rik, Cdr2l, Ict1, Atp5h, Kctd2, 4933422H20Rik, Slc16a5, Armc7, Nt5c, Hn1, Sumo2, Nup85, Gga3, Mrps7, Mif4gd, Slc25a19, Grb2, LOC100043184, 2310067B10Rik, Caskin2, Tsen54, Llgl2
Downstream geneUnc13d, Wbp2, Trim47, Trim65, Mrpl38, Fbf1, Acox1, 2310004N24Rik, Cdk3, Evpl, Srp68, Galr2, Exoc7, Foxj1, LOC668255, 1110014K08Rik, Qrich2, Prpsap1, LOC629971, Sphk1, Ube2o, Aanat, Rhbdf2, Cygb, OTTMUSG00000003947, 1810032O08Rik, St6galnac2, LOC634720, BC018473, St6galnac1, Mxra7, Jmjd6, 1110005A03Rik, LOC100043293, Sfrs2, Mfsd11, Mgat5b, LOC100042036
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-290L17.bB6Ng01-290L17.g
ACCGA087800GA087801
length989895
definitionB6Ng01-290L17.b B6Ng01-290L17.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(115,918,398 - 115,919,374)(115,730,275 - 115,731,166)
sequence
gaattcttatcatggcctcgggggcttaagactgggtgggagtgcatgtg
tgaaggtatcctgttggagtatagcatccccgtgagaggtagggagaggg
tcctgactcacaggatcaggtaggtcaaaagctaccagccagcacctcct
gtgaagggagggccagagcaggaggggccaggtaagcctgggctatctcc
cttgttttacagacaggacaaaaaatgtactagtaagaccactaacacaa
caggagagcctgggtgtctgactccagaagcctccttcccctcagcttcc
cctcagcaggctgccatgctatccacagctctctggctgccagggcagcg
ctatcttcatgagcctccttatctcttgctggcttccttccacccaggct
cgctgttctagtctcttctgctttgctcccttgcccactgactgactttt
cagtatagtatcagcacattgggaaaaaagacgacactgaactgttgcac
tcttcacacagacctctgagcttgacttttggggtgggggggaagagaag
agaaaagaagagagattgccctatgatacacctgcagtgtgcactgtctg
accctgtctgccaggagagacctgtagacttacataaacagctagtgttt
gtggatcctgtgtcactcagtacacatgtgtgcccagcactgctggtggc
tgaggtgacacttgcattggtccagcagagctaaaagtcactcagcaagg
agacagagagtcaatgggtcgggactcaggtgggagatctccagatgaca
cacacttagcctctaactgggacaacaaggccctaacctctactgaagac
gaggtgtaaattccttggctgaggtgaggagtccttacgctgaccagcac
ttgggaagggccactcctcctgactggaggtccagctggcctggggaatt
atgaagagggctgggggctgtttatgaaaagaaaggggc
gaattcactctgtaggccaggctggcctcgaactcagaaatccgactgcc
tctgcctcccaagtgctgggattaaaggcgtgcaccaccacgcctggcta
cagccagtgttttttcccaccccttaggttaaagtgacctgtgacagctt
gtggagagggtgtggctggaacagttttgacctctgtctcaaagcctcca
actatgtcttctttaactccttcagacttcctcagaaatatcacatctag
ggcttggtggaggtggctcctgggcctgaggtgaccctgaccttctcaaa
taggacctggctgttcaaaaggatgaagggaacacactgtagggattctg
ctgcaggccaagctgactccctcagtctgaggaagagatctggggagaca
aatgtccccatgtctaggttgtgtggggctgcggtcttcaggaaggaacg
gggtgaattcagggaacagtaagtgtgtacaggacctgagaaagtgtggc
tccttccttaccaggccacagaccacaccttcctccagaagtgccactat
caccatggtgaccaccccagctacgccaagcctcagctgcccctgccaat
cttcacggtgcggcactacgctgggactgtcacctaccaggtatctgccc
tcagacaaagaatgcaggtgaatcatcaaggccgtgtcatcgtagtgtct
gcccctcccaagctgagtcacctaccagaagtggcaccgtatctccatga
gagcctcagccacacccacttctgagtgttattttttaatagctccttag
ctaaggatggggccttgagagcccctcccatccatgctggattttttttt
ttttttacatttgtttttagttaatgaggtggggggaaagggtgc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_115918398_115919374
seq2: B6Ng01-290L17.b_48_1036 (reverse)

seq1  GCCCCTATC-TTTCATAAACAGCCCCCAGCCCTCTTCCT-GCTCCCCA-G  47
      |||||| || ||||||||||||||||||||||||||| |   |||||| |
seq2  GCCCCTTTCTTTTCATAAACAGCCCCCAGCCCTCTTCATAATTCCCCAGG  50

seq1  CCAGCTGGACCTCCAGTCA-GAGGAGTGGCCCTT-CCAAGTGCTGGTCAG  95
      ||||||||||||||||||| |||||||||||||| |||||||||||||||
seq2  CCAGCTGGACCTCCAGTCAGGAGGAGTGGCCCTTCCCAAGTGCTGGTCAG  100

seq1  CGTAGGGACTCCTCACCTCAGCC-AGGAATTTACACCTCGTCTTCAGTAG  144
      |||| |||||||||||||||||| ||||||||||||||||||||||||||
seq2  CGTAAGGACTCCTCACCTCAGCCAAGGAATTTACACCTCGTCTTCAGTAG  150

seq1  AGGTTAGGG-CTTG-TGT-CCAGTTAGAGGCT-AGTGCTGTGTCATCTGG  190
      ||||||||| |||| ||| ||||||||||||| |||| ||||||||||||
seq2  AGGTTAGGGCCTTGTTGTCCCAGTTAGAGGCTAAGTG-TGTGTCATCTGG  199

seq1  AGATCTCCCACCTGAGT-CCGACCCATTGACTCTCTGTCTCCTTGCTGGG  239
      ||||||||||||||||| |||||||||||||||||||||||||||||| |
seq2  AGATCTCCCACCTGAGTCCCGACCCATTGACTCTCTGTCTCCTTGCTGAG  249

seq1  TGAC-TTTAGCTCTGCTGGACCAATGCAAGTGTCACCTCAGCCACCAGCA  288
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTTTTAGCTCTGCTGGACCAATGCAAGTGTCACCTCAGCCACCAGCA  299

seq1  GTGCTGGGCACACATGTGTACTGAGTGACACAGGATCCACAAACACTAGC  338
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTGGGCACACATGTGTACTGAGTGACACAGGATCCACAAACACTAGC  349

seq1  TG-TTATGTAAGTCTACAGGTCTCTCCTGGCAGACAGGGTCAGACAGTGC  387
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTATGTAAGTCTACAGGTCTCTCCTGGCAGACAGGGTCAGACAGTGC  399

seq1  ACACTGCAGGTGTATCATAGGGCAATCTCTCTTCTTTTCTCTTCTCTTCC  437
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTGCAGGTGTATCATAGGGCAATCTCTCTTCTTTTCTCTTCTCTTCC  449

seq1  CCCCCACCCCAAAAGTCAAGCTCAGAGGTCTGTGTGAAGAGTGCAACAGT  487
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCACCCCAAAAGTCAAGCTCAGAGGTCTGTGTGAAGAGTGCAACAGT  499

seq1  TCAGTGTCGTCTTTTTTCCCAATGTGCTGATACTATACTGAAAAGTCAGT  537
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTGTCGTCTTTTTTCCCAATGTGCTGATACTATACTGAAAAGTCAGT  549

seq1  CAGTGGGCAAGGGAGCAAAGCAGAAGAGACTAGAACAGCGAGCCTGGGTG  587
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGGGCAAGGGAGCAAAGCAGAAGAGACTAGAACAGCGAGCCTGGGTG  599

seq1  GAAGGAAGCCAGCAAGAGATAAGGAGGCTCATGAAGATAGCGCTGCCCTG  637
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGAAGCCAGCAAGAGATAAGGAGGCTCATGAAGATAGCGCTGCCCTG  649

seq1  GCAGCCAGAGAGCTGTGGATAGCATGGCAGCCTGCTGAGGGGAAGCTGAG  687
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCCAGAGAGCTGTGGATAGCATGGCAGCCTGCTGAGGGGAAGCTGAG  699

seq1  GGGAAGGAGGCTTCTGGAGTCAGACACCCAGGCTCTCCTGTTGTGTTAGT  737
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAAGGAGGCTTCTGGAGTCAGACACCCAGGCTCTCCTGTTGTGTTAGT  749

seq1  GGTCTTACTAGTACATTTTTTGTCCTGTCTGTAAAACAAGGGAGATAGCC  787
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCTTACTAGTACATTTTTTGTCCTGTCTGTAAAACAAGGGAGATAGCC  799

seq1  CAGGCTTACCTGGCCCCTCCTGCTCTGGCCCTCCCTTCACAGGAGGTGCT  837
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCTTACCTGGCCCCTCCTGCTCTGGCCCTCCCTTCACAGGAGGTGCT  849

seq1  GGCTGGTAGCTTTTGACCTACCTGATCCTGTGAGTCAGGACCCTCTCCCT  887
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGGTAGCTTTTGACCTACCTGATCCTGTGAGTCAGGACCCTCTCCCT  899

seq1  ACCTCTCACGGGGATGCTATACTCCAACAGGATACCTTCACACATGCACT  937
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCTCACGGGGATGCTATACTCCAACAGGATACCTTCACACATGCACT  949

seq1  CCCACCCAGTCTTAAGCCCCCGAGGCCATGATAAGAATTC  977
      ||||||||||||||||||||||||||||||||||||||||
seq2  CCCACCCAGTCTTAAGCCCCCGAGGCCATGATAAGAATTC  989

seq1: chr11_115730275_115731166
seq2: B6Ng01-290L17.g_67_961

seq1  GAATTCACTCTGTAGGCCAGGCTGGCCTCGAACTCAGAAATCCGACTGCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTCTGTAGGCCAGGCTGGCCTCGAACTCAGAAATCCGACTGCC  50

seq1  TCTGCCTCCCAAGTGCTGGGATTAAAGGCGTGCACCACCACGCCTGGCTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCCTCCCAAGTGCTGGGATTAAAGGCGTGCACCACCACGCCTGGCTA  100

seq1  CAGCCAGTGTTTTTTCCCACCCCTTAGGTTAAAGTGACCTGTGACAGCTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCAGTGTTTTTTCCCACCCCTTAGGTTAAAGTGACCTGTGACAGCTT  150

seq1  GTGGAGAGGGTGTGGCTGGAACAGTTTTGACCTCTGTCTCAAAGCCTCCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGAGAGGGTGTGGCTGGAACAGTTTTGACCTCTGTCTCAAAGCCTCCA  200

seq1  ACTATGTCTTCTTTAACTCCTTCAGACTTCCTCAGAAATATCACATCTAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATGTCTTCTTTAACTCCTTCAGACTTCCTCAGAAATATCACATCTAG  250

seq1  GGCTTGGTGGAGGTGGCTCCTGGGCCTGAGGTGACCCTGACCTTCTCAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTGGTGGAGGTGGCTCCTGGGCCTGAGGTGACCCTGACCTTCTCAAA  300

seq1  TAGGACCTGGCTGTTCAAAAGGATGAAGGGAACACACTGTAGGGATTCTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGACCTGGCTGTTCAAAAGGATGAAGGGAACACACTGTAGGGATTCTG  350

seq1  CTGCAGGCCAAGCTGACTCCCTCAGTCTGAGGAAGAGATCTGGGGAGACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCAGGCCAAGCTGACTCCCTCAGTCTGAGGAAGAGATCTGGGGAGACA  400

seq1  AATGTCCCCATGTCTAGGTTGTGTGGGGCTGCGGTCTTCAGGAAGGAACG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTCCCCATGTCTAGGTTGTGTGGGGCTGCGGTCTTCAGGAAGGAACG  450

seq1  GGGTGAATTCAGGGAACAGTAAGTGTGTACAGGACCTGAGAAAGTGTGGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTGAATTCAGGGAACAGTAAGTGTGTACAGGACCTGAGAAAGTGTGGC  500

seq1  TCCTTCCTTACCAGGCCACAGACCACACCTTCCTCCAGAAGTGCCACTAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTCCTTACCAGGCCACAGACCACACCTTCCTCCAGAAGTGCCACTAT  550

seq1  CACCATGGTGACCACCCCAGCTACGCCAAGCCTCAGCTGCCCCTGCCAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCATGGTGACCACCCCAGCTACGCCAAGCCTCAGCTGCCCCTGCCAAT  600

seq1  CTTCACGGTGCGGCACTACGCTGGGACTGTCACCTACCAGGTATCTGCCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCACGGTGCGGCACTACGCTGGGACTGTCACCTACCAGGTATCTGCCC  650

seq1  TCAGACAAAGAATGCAGGTGAATCATCAAGGCCGTGTCATCGTAGTGTCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGACAAAGAATGCAGGTGAATCATCAAGGCCGTGTCATCGTAGTGTCT  700

seq1  GCCCCTCCCAAGCTGAGTCACCTACCAGAAGTGGCACCGTATCTCCATGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCCTCCCAAGCTGAGTCACCTACCAGAAGTGGCACCGTATCTCCATGA  750

seq1  GAGCCTCAGGCCACACCCACTTCTGAGTGTTATTTTTTAATAGCTCCTTA  800
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCTCA-GCCACACCCACTTCTGAGTGTTATTTTTTAATAGCTCCTTA  799

seq1  GCTAAGGATGGGGCCTTGAGAGCCCCTCCCATCCATGCTGGA--TTTTTT  848
      ||||||||||||||||||||||||||||||||||||||||||  ||||||
seq2  GCTAAGGATGGGGCCTTGAGAGCCCCTCCCATCCATGCTGGATTTTTTTT  849

seq1  TTTTTTTACATTTGTTTTTAGTTAATGAGGTGGGGG--AAGGGTGC  892
      ||||||||||||||||||||||||||||||||||||  ||||||||
seq2  TTTTTTTACATTTGTTTTTAGTTAATGAGGTGGGGGGAAAGGGTGC  895