BAC Information

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BAC

Clone NameB6Ng01-290M22
Chromosome11 (Build37)
Map Location 72,961,799 - 73,083,349
singlet/doubletdoublet
Overlap geneP2rx5, Tmem93, Tax1bp3, Ctns, Carkl, Trpv1, Trpv3
Upstream gene4933427D14Rik, Txnl5, Med31, 4930563E22Rik, Slc13a5, Fbxo39, LOC628100, Tekt1, D130058I21Rik, Ggt6, Mybbp1a, 9830002I17Rik, LOC432577, Ube2g1, Ankfy1, Cyb5d2, Zzef1, LOC627119, Atp2a3, P2rx1, LOC100043309, Camkk1, 1200014J11Rik, Itgae, Gsg2
Downstream geneAspa, Spata22, Olfr20, Olfr376, Olfr377-ps1, Olfr1, Olfr75-ps1, Olfr378, Olfr379-ps1, Olfr380, Olfr381, Olfr382, Olfr383-ps1, Olfr385, Olfr386, Olfr387-ps1, 1700012C15Rik, Olfr388-ps1, Olfr389, Olfr390, Olfr391-ps1, Olfr392, Olfr393, Olfr394, Olfr395, Olfr396-ps1, Olfr23, Olfr22-ps1, Olfr397, Olfr398, Olfr139, Olfr399, OTTMUSG00000006163, LOC668567, Olfr400-ps1, Olfr401, Olfr402, Olfr403, Olfr43, Olfr404-ps1, Olfr405-ps1, Olfr406
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-290M22.bB6Ng01-290M22.g
ACCGA087858GA087859
length8291,102
definitionB6Ng01-290M22.b B6Ng01-290M22.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(72,961,799 - 72,962,624)(73,082,247 - 73,083,349)
sequence
gaattccctcagaggattagcctactgcttaggatgatggacccactaac
taggtcaagggttctggctttcctgagtcacaggcctctctttggcaacc
tgctgagcccttctccgtctttcttcaagcattgttttacacgagtgttc
caggagaaaagctgactttcacagtgaacatgtcgtagtttgtcagaaga
tcttcactcacacagagaccacagagaccgccatcgttgcaaaacgcatg
aggattttattttttcaacatgttggggaaccccctctcagcacgcaggc
cggaggagagacccagaacaaagaaaacacactttttatacctttgtaag
ggccggatataggcaccagggtagtttggcttattttaattggtgtagtc
aataacctttttagacattggttggtttgtagagggtgactctcatcttg
tctgtccttgagttttttagtgtatagcggggcaggggaattgttaattt
tgttttggaagcttagtaattttgaccattaaaactatgtttttatattt
gtttagtcagccagctttttatctgactttgtacttggcctgctggtaca
gtttggaaagtcattttgaaggggggggggaatgtactgggtagtcttga
atttattttggatattacaaacacaaagatctatccaccacctggtttcc
accactaacattgtaccgtgttttctttgttacgtgttttcccatctgtc
tgtccttgtgtgtattaatttttcattaaaaatttgttttagtgtttggc
cattgttttatgtgcatgtgtgtgtgtgt
gaattcctggagggtgcctccagtgtcccatactgtacaacactcaggcc
caagccttcagtcttacctcttcttggtgggggtgagatctgctggcctc
ttctctgtcagtacaacagggttcccgccaggtgccgtggttcttttgcc
catgaggggcgccatctccttggagtgggcattcattgctggagcctaag
gcatatgctgaggttgaggggcagaggttacttctggtggcttcagactc
tcatgggatatcatccaactcctgcttatacccctccaagagagagctca
ctccctattttccaggctgccagcctttcttgggaacaggcaaactgttc
ctacagtttccatagtcccagcttccaaagcaccaggagagcccagcata
gcacccagaaaaggaccaccctgcctctaactgcccatcaccatctcctg
ccatattactctctagacagacttctaagacttaactttgctttctcaat
gtcctacttaagactttgtattcagatctatttgtcaaggtcacagaacc
tttaactttaacacttaacaggacatcaatgtcacctcctttgctctaga
tgctgctctgaataacacagctggaggttttggatttctcagcatctgct
ggtagtctctgcagctcactcacttcccttctcttgctcttccccgacaa
gctaattacagccaaaccatggcaccctggtagacaccctcttacctaga
agacatagaatcccttactctaggatatagaccaacccttcagttcaaac
gtgctttactaatggtcagtatgggctgagttagaaaaaagtactgataa
accttccaaagagactaggaaatggatctcgaaggatggtttacagactg
ggatgcagcagaaatgccatctgggttgggggcacagccttgcacaatga
ccagggctcaaagcaattcaatgagggtaaagcgggtgagctggagaccc
tgtatgcgttcatggagagtccttggcagcgaagggcttggcagcaagct
gagccacactgtgaagtccttcgagcagactgagctgagaactgatgtca
gg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_72961799_72962624
seq2: B6Ng01-290M22.b_47_875

seq1  GAATTCCCTCAGAGGATTAGCCTACTGCTTAGGATGATGGACCCACTAAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCTCAGAGGATTAGCCTACTGCTTAGGATGATGGACCCACTAAC  50

seq1  TAGGTCAAGGGTTCTGGCTTTCCTGAGTCACAGGCCTCTCTTTGGCAACC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGTCAAGGGTTCTGGCTTTCCTGAGTCACAGGCCTCTCTTTGGCAACC  100

seq1  TGCTGAGCCCTTCTCCGTCTTTCTTCAAGCATTGTTTTACACGAGTGTTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGAGCCCTTCTCCGTCTTTCTTCAAGCATTGTTTTACACGAGTGTTC  150

seq1  CAGGAGAAAAGCTGACTTTCACAGTGAACATGTCGTAGTTTGTCAGAAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAGAAAAGCTGACTTTCACAGTGAACATGTCGTAGTTTGTCAGAAGA  200

seq1  TCTTCACTCACACAGAGACCACAGAGACCGCCATCGTTGCAAAACGCATG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCACTCACACAGAGACCACAGAGACCGCCATCGTTGCAAAACGCATG  250

seq1  AGGATTTTATTTTTTCAACATGTTGGGGAACCCCCTCTCAGCACGCAGGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATTTTATTTTTTCAACATGTTGGGGAACCCCCTCTCAGCACGCAGGC  300

seq1  CGGAGGAGAGACCCAGAACAAAGAAAACACACTTTTTATACCTTTGTAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGAGGAGAGACCCAGAACAAAGAAAACACACTTTTTATACCTTTGTAAG  350

seq1  GGCCGGATATAGGCACCAGGGTAGTTTGGCTTATTTTAATTGGTGTAGTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCGGATATAGGCACCAGGGTAGTTTGGCTTATTTTAATTGGTGTAGTC  400

seq1  AATAACCTTTTTAGACATTGGTTGGTTTGTAGAGGGTGACTCTCATCTTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAACCTTTTTAGACATTGGTTGGTTTGTAGAGGGTGACTCTCATCTTG  450

seq1  TCTGTCCTTGAGTTTTTTAGTGTATAGCGGGGCAGGGGAATTGTTAATTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTCCTTGAGTTTTTTAGTGTATAGCGGGGCAGGGGAATTGTTAATTT  500

seq1  TGTTTTGGAAGCTTAGTAATTTTGACCATTAAAACTATGTTTTTATATTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTGGAAGCTTAGTAATTTTGACCATTAAAACTATGTTTTTATATTT  550

seq1  GTTTAGTCAGCCAGCTTTTTATCTGACTTTGTACTTGGCCTGCTGGTACA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTAGTCAGCCAGCTTTTTATCTGACTTTGTACTTGGCCTGCTGGTACA  600

seq1  GTTTGGAAAGTCATTTTGAAGGGGGGGGGGAATGTACTGGGTAGTCTTGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGGAAAGTCATTTTGAAGGGGGGGGGGAATGTACTGGGTAGTCTTGA  650

seq1  ATTTATTTTGGATATTACAAACACAAAGATCTATCCACCACCTGGTTTCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTATTTTGGATATTACAAACACAAAGATCTATCCACCACCTGGTTTCC  700

seq1  ACCACTAACATTGTACCGTGTTTTCTTTGTTACGTGTTTTCCCATCTGTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACTAACATTGTACCGTGTTTTCTTTGTTACGTGTTTTCCCATCTGTC  750

seq1  TGTCCTTGTGTGTATTAATTTTTCATT-AAAATTTG-TTTAGTG-TTGGC  797
      ||||||||||||||||||||||||||| |||||||| ||||||| |||||
seq2  TGTCCTTGTGTGTATTAATTTTTCATTAAAAATTTGTTTTAGTGTTTGGC  800

seq1  CATTGTTTTATGTGCATGTGTGTGTGTGT  826
      |||||||||||||||||||||||||||||
seq2  CATTGTTTTATGTGCATGTGTGTGTGTGT  829

seq1: chr11_73082247_73083349
seq2: B6Ng01-290M22.g_66_1167 (reverse)

seq1  CCTGACATCAG-TCTCAGCTTCCAAGTTCTGCTCG-AGGGCTTCACAGTG  48
      ||||||||||| ||||||||  ||   |||||||| ||| ||||||||||
seq2  CCTGACATCAGTTCTCAGCT--CA--GTCTGCTCGAAGGACTTCACAGTG  46

seq1  TGGCTCAGCCTGCTGCCAAGCCCTTCGCTGCC-AGGGCTCTCCATGAACG  97
      ||||||||| |||||||||||||||||||||| ||| |||||||||||||
seq2  TGGCTCAGCTTGCTGCCAAGCCCTTCGCTGCCAAGGACTCTCCATGAACG  96

seq1  CATACAGGGTCTCCAGCTCCACCCGCTTTACCCTCATTGAATTGCTTTGA  147
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  CATACAGGGTCTCCAGCT-CACCCGCTTTACCCTCATTGAATTGCTTTGA  145

seq1  GCCCTGGTCATTGTGC-AGGCTGTGCCCCCAACCCAGATGGCATTTCTGC  196
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  GCCCTGGTCATTGTGCAAGGCTGTGCCCCCAACCCAGATGGCATTTCTGC  195

seq1  TGCATCCCAGTCTGTAAACCATCCTTCGAGATCCATTTCCTAGTCTCTTT  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATCCCAGTCTGTAAACCATCCTTCGAGATCCATTTCCTAGTCTCTTT  245

seq1  GGAAGGTTTATCAGTACTTTTTTCTAACTCAGCCCATACTGACCATTAGT  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGGTTTATCAGTACTTTTTTCTAACTCAGCCCATACTGACCATTAGT  295

seq1  AAAGCACGTTTGAACTGAAGGGTTGGTCTATATCCTAGAGTAAGGGATTC  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCACGTTTGAACTGAAGGGTTGGTCTATATCCTAGAGTAAGGGATTC  345

seq1  TATGTCTTCTAGGTAAGAGGGTGTCTACCAGGGTGCCATGGTTTGGCTGT  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTCTTCTAGGTAAGAGGGTGTCTACCAGGGTGCCATGGTTTGGCTGT  395

seq1  AATTAGCTTGTCGGGGAAGAGCAAGAGAAGGGAAGTGAGTGAGCTGCAGA  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAGCTTGTCGGGGAAGAGCAAGAGAAGGGAAGTGAGTGAGCTGCAGA  445

seq1  GACTACCAGCAGATGCTGAGAAATCCAAAACCTCCAGCTGTGTTATTCAG  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTACCAGCAGATGCTGAGAAATCCAAAACCTCCAGCTGTGTTATTCAG  495

seq1  AGCAGCATCTAGAGCAAAGGAGGTGACATTGATGTCCTGTTAAGTGTTAA  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGCATCTAGAGCAAAGGAGGTGACATTGATGTCCTGTTAAGTGTTAA  545

seq1  AGTTAAAGGTTCTGTGACCTTGACAAATAGATCTGAATACAAAGTCTTAA  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTAAAGGTTCTGTGACCTTGACAAATAGATCTGAATACAAAGTCTTAA  595

seq1  GTAGGACATTGAGAAAGCAAAGTTAAGTCTTAGAAGTCTGTCTAGAGAGT  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGGACATTGAGAAAGCAAAGTTAAGTCTTAGAAGTCTGTCTAGAGAGT  645

seq1  AATATGGCAGGAGATGGTGATGGGCAGTTAGAGGCAGGGTGGTCCTTTTC  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATGGCAGGAGATGGTGATGGGCAGTTAGAGGCAGGGTGGTCCTTTTC  695

seq1  TGGGTGCTATGCTGGGCTCTCCTGGTGCTTTGGAAGCTGGGACTATGGAA  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTGCTATGCTGGGCTCTCCTGGTGCTTTGGAAGCTGGGACTATGGAA  745

seq1  ACTGTAGGAACAGTTTGCCTGTTCCCAAGAAAGGCTGGCAGCCTGGAAAA  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTAGGAACAGTTTGCCTGTTCCCAAGAAAGGCTGGCAGCCTGGAAAA  795

seq1  TAGGGAGTGAGCTCTCTCTTGGAGGGGTATAAGCAGGAGTTGGATGATAT  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGGAGTGAGCTCTCTCTTGGAGGGGTATAAGCAGGAGTTGGATGATAT  845

seq1  CCCATGAGAGTCTGAAGCCACCAGAAGTAACCTCTGCCCCTCAACCTCAG  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATGAGAGTCTGAAGCCACCAGAAGTAACCTCTGCCCCTCAACCTCAG  895

seq1  CATATGCCTTAGGCTCCAGCAATGAATGCCCACTCCAAGGAGATGGCGCC  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATGCCTTAGGCTCCAGCAATGAATGCCCACTCCAAGGAGATGGCGCC  945

seq1  CCTCATGGGCAAAAGAACCACGGCACCTGGCGGGAACCCTGTTGTACTGA  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCATGGGCAAAAGAACCACGGCACCTGGCGGGAACCCTGTTGTACTGA  995

seq1  CAGAGAAGAGGCCAGCAGATCTCACCCCCACCAAGAAGAGGTAAGACTGA  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGAAGAGGCCAGCAGATCTCACCCCCACCAAGAAGAGGTAAGACTGA  1045

seq1  AGGCTTGGGCCTGAGTGTTGTACAGTATGGGACACTGGAGGCACCCTCCA  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTTGGGCCTGAGTGTTGTACAGTATGGGACACTGGAGGCACCCTCCA  1095

seq1  GGAATTC  1103
      |||||||
seq2  GGAATTC  1102