BAC Information

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BAC

Clone NameB6Ng01-292B19
Chromosome11 (Build37)
Map Location 53,104,576 - 53,294,581
singlet/doubletdoublet
Overlap geneHspa4, Zcchc10, Aff4, LOC100040576, Leap2, Uqcrq, Gdf9, Shroom1, ENSMUSG00000049427, Ankrd43
Upstream geneVdac1, 9530068E07Rik, LOC667659, LOC667667, LOC100040523, Fstl4, LOC623205
Downstream geneLOC546500, Sept8, Cycl, Kif3a, Il4, Il13, LOC667731, Rad50, Il5, Irf1, LOC622459, Slc22a5, LOC667762, Slc22a21, Slc22a4, Pdlim4, P4ha2, LOC623647, Dbi-ps, Csf2, Il3, Acsl6, 4930404A10Rik, LOC100041400, LOC100041411, Fnip1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-292B19.bB6Ng01-292B19.g
ACCGA088832GA088833
length1,1681,108
definitionB6Ng01-292B19.b B6Ng01-292B19.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(53,293,434 - 53,294,581)(53,104,576 - 53,105,680)
sequence
gaattcatagtagaagaaagtatgtcaaaatgttaatggtcatttctgct
gctgatattttttccttctttgttttttcctgtgggtttattcctgaaat
cctatatgaaatgggttattttgggcaagcatggtggcacacacctataa
tcctagcactcaggactgaggcggtgacagcacaagttccagaccaactt
gaacttcatatagagacaaaaataaagggggtatttttggaatggctcag
tgagtaaaggtgcctgccaccaaaccagatgatgtgaatttgcactccag
agcccatgtaatgatggaaagccgaaccaatgtctcaagttatcttcttt
ctgacctacaaaacacacacacacacacacacagagagagagagagagag
agagagagagagagagagagagagagaaacagatagacagagagagacag
agagacagaaagtcaacgaataataaaatatgtagatcgcaaagctccac
atttcaaaaagtattatctatcatgagaaaactgcttcctaaacctcttg
tgagcctccagtaccctgcactcaataccacacagggaactgttcttgct
atgaattttgtaaatctggttggtttttttccccctatataaaaagcatc
agacattggagaggtattgatgcaatatatgcagtgcaaggacatatata
tgtaaaatattgcttttattttgtggtaaatagtgctgaaggtaataaat
acccacgcctcgcccatacgctgcaacatccccagggaacacacccaccc
tagcaaccgggagtggagctgaagagcaacgctgcgcctttaatttcccg
cctttaattggtgggggcaagtgcagagaggttcccgcttttcccattcc
ctccgcacctccagtggcagctgtcacctgttaagccgagcggccgcaca
gggggcaatggagccctggcgctccattgggacaggacctcttcagcagc
aacttaccccccagtctgggggccagggccttggcgcagcggaaggatag
gagtcccaggtgccccttcgcccggagaactttcttcagcacgcgccaag
gccttgaactgccagtccagtttcggaaatcaagagtccaggtgagcccg
gcttggtcggctggggcg
gaattctttaagaaagcagactgagcggggcgtggtggcacacgccttta
atcccagcactcaggaggcagaggcaggcggatttctcagttccaggaca
gccagggctacacagagaaaccctgtctcgaaaaacaaacaaacaaaaaa
agcagactgagcaagctgtggagagcaagccaatagcctctgcatcagct
cctgcttccaggttcctgccctgcttgagctcctgtcctgactgactttg
gtaatgaacagagatgtaaaagcatgaacccaataaaccctttcttctcc
aacttgcttttggtcatggtgtttcgctgcagcaatagaaaccctaacta
agacactatctctcaagtgctgggattataaaacaaactgtttttatgta
gtgctagggactgaacccaggactcacgcatgctaccaactgatgtccat
ccccaggcaagaaacttctctgatttttatgtgcacataaagtcaatgtc
caggtttttcctctacttcttcccagttcattttctaagagaagcaagca
ctttaccactcactgggtcatctccccagccccagcggcatcttaggctc
attttgggtcctgtctgtcaaaaaagctactcacatatttgcagctccaa
actgaactgtatcaaggtgaaacacgcaactccttaactctacagctacc
tcagacattcagggtaacagattcttggagcttctgttgctctggttact
aagaaacaagcaaatatatcaagatccttgttgacaaagaacaatgcaag
ttgtcaccaagcctattcaggtctagaggcctttcctgtggagcctactt
aacaataaccttagatataaaggtgaaaggcctttgaatagtttcaagag
catttaaaataccaaaagttaactctgtttaagagtccaggcacatagca
catgagaagctgaggcagaaagactgagttcaaggctcagcctgagctac
agagttctaagacaaccctaggacatatagctagaacctacattcaaaaa
aaagaagaaaagaaaattctacaagtacatcaaagagggctcttgatgct
tgagtgac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_53293434_53294581
seq2: B6Ng01-292B19.b_46_1213 (reverse)

seq1  CGCCCCAGCCG-CCCAGCCGGGCTCACCTGGGACTC-TGATTTCCGAAAC  48
      ||||||||||| || |||||||||||||| |||||| |||||||||||||
seq2  CGCCCCAGCCGACCAAGCCGGGCTCACCT-GGACTCTTGATTTCCGAAAC  49

seq1  TGGACT-GCAG-TCACGCCCTCGCCGCCGTGCTG-AGAA--GTCTCCGGG  93
      |||||| |||| ||| | ||| | || ||||||| ||||   ||||||||
seq2  TGGACTGGCAGTTCAAGGCCTTGGCG-CGTGCTGAAGAAAGTTCTCCGGG  98

seq1  CGAA-GGGCACCTGGGACTCCTATCCTCCGCCTGCGCCA--GGCCTGGCC  140
      |||| |||||||||||||||||||||| |  ||||||||  | |||||||
seq2  CGAAGGGGCACCTGGGACTCCTATCCTTCCGCTGCGCCAAGGCCCTGGCC  148

seq1  CCCAGACTGGGGGGTAGGTTGCTGCTG-AGAGGTCCTGT-CCAATGG-GC  187
      |||||||||||||||| |||||||||| ||||||||||| ||||||| ||
seq2  CCCAGACTGGGGGGTAAGTTGCTGCTGAAGAGGTCCTGTCCCAATGGAGC  198

seq1  GCCA-GGCTCCAT--GCCCCTGTGCGG-CGCTCGGCTT-ACAGGTGACAG  232
      |||| ||||||||   ||||||||||| |||||||||| |||||||||||
seq2  GCCAGGGCTCCATTGCCCCCTGTGCGGCCGCTCGGCTTAACAGGTGACAG  248

seq1  CTGCCACTGGAGGTGCGGAGGGAATGGG-AAAGC-GGAACCTCTCTGCAC  280
      |||||||||||||||||||||||||||| ||||| |||||||||||||||
seq2  CTGCCACTGGAGGTGCGGAGGGAATGGGAAAAGCGGGAACCTCTCTGCAC  298

seq1  -TGCCCCCACCAATTAAAGGCGG--AATTAAAGGCGCAGCGTTGCTCTTC  327
       ||||||||||||||||||||||  |||||||||||||||||||||||||
seq2  TTGCCCCCACCAATTAAAGGCGGGAAATTAAAGGCGCAGCGTTGCTCTTC  348

seq1  AGCTCCACTCCCGGTTGCTA-GGTGGGTGTGTTCCCTGGGGATGTTGCAG  376
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  AGCTCCACTCCCGGTTGCTAGGGTGGGTGTGTTCCCTGGGGATGTTGCAG  398

seq1  CGTATGGGCGAGGCGTGGGTATTTATTACCTTCAGCACTATTTACCACAA  426
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTATGGGCGAGGCGTGGGTATTTATTACCTTCAGCACTATTTACCACAA  448

seq1  AATAAAAGCAATATTTTACATATATATGTCCTTGCACTGCATATATTGCA  476
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAAAGCAATATTTTACATATATATGTCCTTGCACTGCATATATTGCA  498

seq1  TCAATACCTCTCCAATGTCTGATGCTTTTTATATAGGGGGAAAAAAACCA  526
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATACCTCTCCAATGTCTGATGCTTTTTATATAGGGGGAAAAAAACCA  548

seq1  ACCAGATTTACAAAATTCATAGCAAGAACAGTTCCCTGTGTGGTATTGAG  576
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGATTTACAAAATTCATAGCAAGAACAGTTCCCTGTGTGGTATTGAG  598

seq1  TGCAGGGTACTGGAGGCTCACAAGAGGTTTAGGAAGCAGTTTTCTCATGA  626
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGGGTACTGGAGGCTCACAAGAGGTTTAGGAAGCAGTTTTCTCATGA  648

seq1  TAGATAATACTTTTTGAAATGTGGAGCTTTGCGATCTACATATTTTATTA  676
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATAATACTTTTTGAAATGTGGAGCTTTGCGATCTACATATTTTATTA  698

seq1  TTCGTTGACTTTCTGTCTCTCTGTCTCTCTCTGTCTATCTGTTTCTCTCT  726
      |||||||||||||||||||||||||||||||||||||||||||  |||||
seq2  TTCGTTGACTTTCTGTCTCTCTGTCTCTCTCTGTCTATCTGTT--TCTCT  746

seq1  CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTGTGTGTGTGT  776
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTGTGTGTGTGT  796

seq1  GTGTGTGTGTTTTGTAGGTCAGAAAGAAGATAACTTGAGACATTGGTTCG  826
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGTGTTTTGTAGGTCAGAAAGAAGATAACTTGAGACATTGGTTCG  846

seq1  GCTTTCCATCATTACATGGGCTCTGGAGTGCAAATTCACATCATCTGGTT  876
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTCCATCATTACATGGGCTCTGGAGTGCAAATTCACATCATCTGGTT  896

seq1  TGGTGGCAGGCACCTTTACTCACTGAGCCATTCCAAAAATACCCCCTTTA  926
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGGCAGGCACCTTTACTCACTGAGCCATTCCAAAAATACCCCCTTTA  946

seq1  TTTTTGTCTCTATATGAAGTTCAAGTTGGTCTGGAACTTGTGCTGTCACC  976
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTGTCTCTATATGAAGTTCAAGTTGGTCTGGAACTTGTGCTGTCACC  996

seq1  GCCTCAGTCCTGAGTGCTAGGATTATAGGTGTGTGCCACCATGCTTGCCC  1026
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCAGTCCTGAGTGCTAGGATTATAGGTGTGTGCCACCATGCTTGCCC  1046

seq1  AAAATAACCCATTTCATATAGGATTTCAGGAATAAACCCACAGGAAAAAA  1076
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATAACCCATTTCATATAGGATTTCAGGAATAAACCCACAGGAAAAAA  1096

seq1  CAAAGAAGGAAAAAATATCAGCAGCAGAAATGACCATTAACATTTTGACA  1126
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGAAGGAAAAAATATCAGCAGCAGAAATGACCATTAACATTTTGACA  1146

seq1  TACTTTCTTCTACTATGAATTC  1148
      ||||||||||||||||||||||
seq2  TACTTTCTTCTACTATGAATTC  1168

seq1: chr11_53104576_53105680
seq2: B6Ng01-292B19.g_65_1172

seq1  GAATTCTTTAAGAAAGCAGACTGAGCGGGGCGTGGTGGCACACGCCTTTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTAAGAAAGCAGACTGAGCGGGGCGTGGTGGCACACGCCTTTA  50

seq1  ATCCCAGCACTCAGGAGGCAGAGGCAGGCGGATTTCTCAGTTCCAGGACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCAGCACTCAGGAGGCAGAGGCAGGCGGATTTCTCAGTTCCAGGACA  100

seq1  GCCAGGGCTACACAGAGAAACCCTGTCTCGAAAAACAAACAAACAAAAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGGGCTACACAGAGAAACCCTGTCTCGAAAAACAAACAAACAAAAAA  150

seq1  AGCAGACTGAGCAAGCTGTGGAGAGCAAGCCAATAGCCTCTGCATCAGCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGACTGAGCAAGCTGTGGAGAGCAAGCCAATAGCCTCTGCATCAGCT  200

seq1  CCTGCTTCCAGGTTCCTGCCCTGCTTGAGCTCCTGTCCTGACTGACTTTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCTTCCAGGTTCCTGCCCTGCTTGAGCTCCTGTCCTGACTGACTTTG  250

seq1  GTAATGAACAGAGATGTAAAAGCATGAACCCAATAAACCCTTTCTTCTCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATGAACAGAGATGTAAAAGCATGAACCCAATAAACCCTTTCTTCTCC  300

seq1  AACTTGCTTTTGGTCATGGTGTTTCGCTGCAGCAATAGAAACCCTAACTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTGCTTTTGGTCATGGTGTTTCGCTGCAGCAATAGAAACCCTAACTA  350

seq1  AGACACTATCTCTCAAGTGCTGGGATTATAAAACAAACTGTTTTTATGTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACACTATCTCTCAAGTGCTGGGATTATAAAACAAACTGTTTTTATGTA  400

seq1  GTGCTAGGGACTGAACCCAGGACTCACGCATGCTACCAACTGATGTCCAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTAGGGACTGAACCCAGGACTCACGCATGCTACCAACTGATGTCCAT  450

seq1  CCCCAGGCAAGAAACTTCTCTGATTTTTATGTGCACATAAAGTCAATGTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCAGGCAAGAAACTTCTCTGATTTTTATGTGCACATAAAGTCAATGTC  500

seq1  CAGGTTTTTCCTCTACTTCTTCCCAGTTCATTTTCTAAGAGAAGCAAGCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTTTTTCCTCTACTTCTTCCCAGTTCATTTTCTAAGAGAAGCAAGCA  550

seq1  CTTTACCACTCACTGGGTCATCTCCCCAGCCCCAGCGGCATCTTAGGCTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTACCACTCACTGGGTCATCTCCCCAGCCCCAGCGGCATCTTAGGCTC  600

seq1  ATTTTGGGTCCTGTCTGTCAAAAAAGCTACTCACATATTTGCAGCTCCAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTGGGTCCTGTCTGTCAAAAAAGCTACTCACATATTTGCAGCTCCAA  650

seq1  ACTGAACTGTATCAAGGTGAAACACGCAACTCCTTAACTCTACAGCTACC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAACTGTATCAAGGTGAAACACGCAACTCCTTAACTCTACAGCTACC  700

seq1  TCAGACATTCAGGGTAACAGATTCTTGGAGCTTCTGTTGCTCTGGTTACT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGACATTCAGGGTAACAGATTCTTGGAGCTTCTGTTGCTCTGGTTACT  750

seq1  AAGAAACAAGCAAATATATCAAGATCCTTGTTGACAAAGAACAATGCAAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAACAAGCAAATATATCAAGATCCTTGTTGACAAAGAACAATGCAAG  800

seq1  TTGTCACCAAGCCTATTCAGGTCTAGAGGCCTTTCCTGTGGAGCCTACTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCACCAAGCCTATTCAGGTCTAGAGGCCTTTCCTGTGGAGCCTACTT  850

seq1  AACAATAACCTTAGATATAAAGGTGAAAGGCCTTTGAATAGTTTCAAAGA  900
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  AACAATAACCTTAGATATAAAGGTGAAAGGCCTTTGAATAGTTTC-AAGA  899

seq1  GCATTTAAAATACCAAAAGTTAACTCTGTTTAAGAGTCCAGGCACATAGC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTTAAAATACCAAAAGTTAACTCTGTTTAAGAGTCCAGGCACATAGC  949

seq1  ACATGAGAAGCTGAGGCAGAAAGACTGAGTTCAAGGC-CAGCCTGAGCTA  999
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  ACATGAGAAGCTGAGGCAGAAAGACTGAGTTCAAGGCTCAGCCTGAGCTA  999

seq1  CAGAGTTCTAAGACAA-CCTAGGACATATAGCAAGAACCTACA-TCAAAA  1047
      |||||||||||||||| ||||||||||||||| |||||||||| ||||||
seq2  CAGAGTTCTAAGACAACCCTAGGACATATAGCTAGAACCTACATTCAAAA  1049

seq1  AAAAGAAAGGAAAAGAAAA-TCCACAAGTACATCAAAGAGGGCTC-TGGT  1095
      |||||||  |||||||||| || |||||||||||||||||||||| || |
seq2  AAAAGAA--GAAAAGAAAATTCTACAAGTACATCAAAGAGGGCTCTTGAT  1097

seq1  GC-TGAGTGAC  1105
      || ||||||||
seq2  GCTTGAGTGAC  1108