BAC Information

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BAC

Clone NameB6Ng01-294J18
Chromosome11 (Build37)
Map Location 84,437,918 - 84,544,583
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC194905, Ccl3, Ccl4, OTTMUSG00000000971, Expi, 1100001G20Rik, 2700008B19Rik, LOC676191, Tcf2, Ddx52, Ap1gbp1, Dusp14, Tada2l, OTTMUSG00000000997, Acaca, LOC100043671, Aatf, Lhx1
Downstream geneMrm1, BC022224, Ggnbp2, Pigw, Znhit3, Car4, Usp32, LOC668794, LOC234848, 1700125H20Rik, Appbp2, D630032N06Rik, Ppm1d, Bcas3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-294J18.bB6Ng01-294J18.g
ACCGA090694GA090695
length2231,152
definitionB6Ng01-294J18.b B6Ng01-294J18.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(84,437,918 - 84,438,140)(84,543,455 - 84,544,583)
sequence
agtgtggttccatgccaccagctctccagtctttacaaagctgggttctg
agagatccctggttgcctgttcatcctgcaggaggtgcatagaggaggga
ggagaggggcctaaggtcattggggcacttgaaagaagaaaagggaagtc
tcttgcaacgtagcaaaacatattcactctgtctgtgtgtgtgtgtgtgt
gtgtatgtgtgtgtgtgtgtgtg
gaattctttctaatcaggtctgggtaaacttattccactctctggggctc
acattccttgataagatacagaaccttctccatttcccatatctttgcat
caattcatggccacttttggacactatactggaagatgaggacacacaca
cagacacacacagacacacagacacacacacacacagacacacacacaca
cacacacacacagagagagagagagagagagagagagagagagagagaga
gagagagagaagatctgtatgtttgagataaagagtgaggaagatcagtc
agatgtcccaagtgctctaaccaaaatctggcaaacctggcttcagtgtg
gtaaggacagcagaagacaactgaggtaagagatgaagaagaggaggggg
tgaaagctggagtgaagagcaggataaagatggataggggaagggaaaat
agaagatcatggtggataggcaggaaggactacaggagacccgaggaagg
aaggggaaggagggaagccacagaggctggggagggcattggggaggaca
tgggggagggcacagggcgggggagggacagctctgctctggcaaggggt
gggagattgaaggctgaatcacagcaggcagcgggggagaggaataagtc
ataaacgcagtgagggcaaaggtcaaatatagactgatggctccatttgt
ttcctagcctgtgaggaggaccccggtggaggttgcagagatattaaccc
tttcctgcccagccttctgatggcgagacgggtttacagatgcatagttg
gaaaagaacctgtgtgtgagattggagaggcatttgaagctgggagtttg
gagctgacccgtggagctacgaggttgggactgggtcttgagagaaagcc
actcaagagtccactttgacttaatgccttaggagattaagtagggccag
atgaaagcttaaccactttctctctttctccttgattggtagtcccattt
tttgcatccccaatgtagggagatgccctatgggttgattgtatttgtta
taccttgtcagcaactaaatttaggagcattgtctgccattggtaaatac
tctacttaatgatggaagccaaactcacactcctctaatgtttttattaa
cc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_84437918_84438140
seq2: B6Ng01-294J18.b_53_275

seq1  AGTGTGGTTCCATGCCACCAGCTCTCCAGTCTTTACAAAGCTGGGTTCTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTGGTTCCATGCCACCAGCTCTCCAGTCTTTACAAAGCTGGGTTCTG  50

seq1  AGAGATCCCTGGTTGCCTGTTCATCCTGCAGGAGGTGCATAGAGGAGGGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGATCCCTGGTTGCCTGTTCATCCTGCAGGAGGTGCATAGAGGAGGGA  100

seq1  GGAGAGGGGCCTAAGGTCATTGGGGCACTTGAAAGAAGAAAAGGGAAGTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAGGGGCCTAAGGTCATTGGGGCACTTGAAAGAAGAAAAGGGAAGTC  150

seq1  TCTTGCAACGTAGCAAAACATATTCACTCTGTCTGTGTGTGTGTGTGTGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGCAACGTAGCAAAACATATTCACTCTGTCTGTGTGTGTGTGTGTGT  200

seq1  GTGTATGTGTGTGTGTGTGTGTG  223
      |||||||||||||||||||||||
seq2  GTGTATGTGTGTGTGTGTGTGTG  223

seq1: chr11_84543455_84544583
seq2: B6Ng01-294J18.g_67_1218 (reverse)

seq1  GGTTAAT--AAACATTAGTGATGT-TGA-TTTTGCTCCCATCATTTAGTA  46
      |||||||  ||||||||| |  || ||| ||| ||| |||||||| ||||
seq2  GGTTAATAAAAACATTAGAGGAGTGTGAGTTTGGCTTCCATCATTAAGTA  50

seq1  -AGTATTTACCATATGCTGACAATGCTCCTTATTTTTGTTGCTGACAGGT  95
       |||||||||||   || |||||||||||| | ||| |||||||||| | 
seq2  GAGTATTTACCAATGGCAGACAATGCTCCTAAATTTAGTTGCTGACAAGG  100

seq1  GTTACCAAATAC-ATC-ACCCATAGGGCATCTCCCTACA-TGGGGATGCA  142
        || ||||||| ||| |||||||||||||||||||||| ||||||||||
seq2  TATAACAAATACAATCAACCCATAGGGCATCTCCCTACATTGGGGATGCA  150

seq1  AAAA--TGGACCACC-ATC-AGGAGAAAGAGAG-AAGTGG-TAAGCTTTC  186
      ||||   |||| ||| ||| ||||||||||||| |||||| |||||||||
seq2  AAAAATGGGACTACCAATCAAGGAGAAAGAGAGAAAGTGGTTAAGCTTTC  200

seq1  ATCTGGCCCCTACTT-ATCTCCT-AGGCATTAAGTC-AAGTGGACTCTTG  233
      |||||| |||||||| ||||||| |||||||||||| |||||||||||||
seq2  ATCTGG-CCCTACTTAATCTCCTAAGGCATTAAGTCAAAGTGGACTCTTG  249

seq1  AGT-GCTTTCTCTCAAGACCCAGTCCCAACCTCGTAGCTCCACGGGTCAG  282
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGCTTTCTCTCAAGACCCAGTCCCAACCTCGTAGCTCCACGGGTCAG  299

seq1  CTCC-AACT-CCAGCTTC-AATGCCTCTCCAATCTCACACACAGGTTCTT  329
      |||| |||| |||||||| |||||||||||||||||||||||||||||||
seq2  CTCCAAACTCCCAGCTTCAAATGCCTCTCCAATCTCACACACAGGTTCTT  349

seq1  TTCC-ACTATGCATCTGT-AACCCGTCTCGCCATCAGAAGGCTGGGCAGG  377
      |||| ||||||||||||| |||||||||||||||||||||||||||||||
seq2  TTCCAACTATGCATCTGTAAACCCGTCTCGCCATCAGAAGGCTGGGCAGG  399

seq1  AAAGGGTTAATATCTCTGCAACCTCCACCGGGGTCCTCCTCACAGGCTAG  427
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGGTTAATATCTCTGCAACCTCCACCGGGGTCCTCCTCACAGGCTAG  449

seq1  GAAAC-AATGGAGCCATCAGTCTATATTTGACCTTTGCCCTCACTGCGTT  476
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACAAATGGAGCCATCAGTCTATATTTGACCTTTGCCCTCACTGCGTT  499

seq1  TATGACTTATTCCTCTCCCCCGCTGCCTGCTGTGATTCAGCCTTCAATCT  526
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGACTTATTCCTCTCCCCCGCTGCCTGCTGTGATTCAGCCTTCAATCT  549

seq1  CCCACCCCTTGCCAGAGCAGAGCTGTCCCTCCCCCGCCCTGTGCCCTCCC  576
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACCCCTTGCCAGAGCAGAGCTGTCCCTCCCCCGCCCTGTGCCCTCCC  599

seq1  CCATGTCCTCCCCAATGCCCTCCCCAGCCTCTGTGGCTTCCCTCCTTCCC  626
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGTCCTCCCCAATGCCCTCCCCAGCCTCTGTGGCTTCCCTCCTTCCC  649

seq1  CTTCCTTCCTCGGGTCTCCTGTAGTCCTTCCTGCCTATCCACCATGATCT  676
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCTTCCTCGGGTCTCCTGTAGTCCTTCCTGCCTATCCACCATGATCT  699

seq1  TCTATTTTCCCTTCCCCTATCCATCTTTATCCTGCTCTTCACTCCAGCTT  726
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATTTTCCCTTCCCCTATCCATCTTTATCCTGCTCTTCACTCCAGCTT  749

seq1  TCACCCCCTCCTCTTCTTCATCTCTTACCTCAGTTGTCTTCTGCTGTCCT  776
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACCCCCTCCTCTTCTTCATCTCTTACCTCAGTTGTCTTCTGCTGTCCT  799

seq1  TACCACACTGAAGCCAGGTTTGCCAGATTTTGGTTAGAGCACTTGGGACA  826
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCACACTGAAGCCAGGTTTGCCAGATTTTGGTTAGAGCACTTGGGACA  849

seq1  TCTGACTGATCTTCCTCACTCTTTATCTCAAACATACAGATCTTCTCTCT  876
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGACTGATCTTCCTCACTCTTTATCTCAAACATACAGATCTTCTCTCT  899

seq1  CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTGTGTGTGT  926
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTGTGTGTGT  949

seq1  GTGTGTGTGTGTGTGTCTGTGTGTGTGTGTGTCTGTGTGTCTGTGTGTGT  976
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGTGTGTGTGTCTGTGTGTGTGTGTGTCTGTGTGTCTGTGTGTGT  999

seq1  CTGTGTGTGTGTCCTCATCTTCCAGTATAGTGTCCAAAAGTGGCCATGAA  1026
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGTGTGTGTCCTCATCTTCCAGTATAGTGTCCAAAAGTGGCCATGAA  1049

seq1  TTGATGCAAAGATATGGGAAATGGAGAAGGTTCTGTATCTTATCAAGGAA  1076
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATGCAAAGATATGGGAAATGGAGAAGGTTCTGTATCTTATCAAGGAA  1099

seq1  TGTGAGCCCCAGAGAGTGGAATAAGTTTACCCAGACCTGATTAGAAAGAA  1126
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAGCCCCAGAGAGTGGAATAAGTTTACCCAGACCTGATTAGAAAGAA  1149

seq1  TTC  1129
      |||
seq2  TTC  1152