BAC Information

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BAC

Clone NameB6Ng01-295P19
Chromosome11 (Build37)
Map Location 102,176,916 - 102,374,688
singlet/doubletdoublet
Overlap geneUbtf, Slc4a1, Rap2ip, Slc25a39, Grn, BC025575, Itga2b
Upstream genePsme3, Aoc2, Aoc3, LOC629949, G6pc, Aarsd1, 1700113I22Rik, Rundc1, Rpl27, Ifi35, Vat1, Rnd2, Brca1, Nbr1, Tmem106a, LOC667306, Rdm1, Arl4d, LOC100038842, Dhx8, Etv4, Meox1, LOC194960, Sost, Dusp3, 1700006E09Rik, Mpp3, Cd300lg, Mpp2, Ppy, Pyy, LOC100040687, LOC666411, Nags, Tmem101, Lsm12, G6pc3, Hdac5, BC030867, Asb16, 2010008E23Rik
Downstream geneMdk-ps1, LOC100040792, Fzd2, 2810433D01Rik, Psmb5-ps, Gm1564, LOC100042456, Ccdc43, Adam11, Gja7, Higd1b, Eftud2, Ccdc103, LOC100042500, Gfap, 3000004C01Rik, C1ql1, Dcakd, Nmt1, Plcd3, Acbd4, Hexim1, Hexim2, Fmnl1, 4933400C05Rik, Map3k14, Arhgap27, 5730442P18Rik, Plekhm1, Lrrc37a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-295P19.bB6Ng01-295P19.g
ACCGA091714GA091715
length1,0481,096
definitionB6Ng01-295P19.b B6Ng01-295P19.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(102,176,916 - 102,177,957)(102,373,602 - 102,374,688)
sequence
gaattcaaacattagcaccatacacagtagttctgagaaaaggcaagcag
gtggacagagttctcagggccttggtctctggagaaccccagaactccaa
gttgacatcttagcccaattattttcagctgctaaagtgcagcccagaga
cagctctgagcctctctgctatggaggctgggctgggggaacccttggcc
aggatgcaaaagagctcctgactttcatttgcatctggtaacctgggccg
gtttccgcagaaaagggtcacatggcccataatcctctctcccctgatgt
ctcacaaacattggcagatgcccagtttcctactaccctccatgtcataa
acataacactgctgacagaggtggctagggtcggggcatctataattcct
aaggcttggagccataaaccacaatccccttccctgttttccacctgcct
ctagtgaaaatctccactaaggtgtgatacttcaagctaagaaaccaaga
aggctggcttccaagagtcttccctgtgaccctcattcatagcaagagat
cgtaaagactcaagttctaagctcaaggccaagtaatttggatttggcca
aacccccatgtgacagatgcttcactttctaagacttaagactgtctgcc
agtgcacagaacgaagcctgagaggaacctttttacaaggctggagagct
cgtgtgtgaaaaaagacaagttttgaaaagagaagctggggacccatacc
ttggcctttgggggcggccatttcagggtctgtgggacagtccgcttctc
cgttcattctccagctgtccagccacctcctcggtcgcgctggccgggcc
acccgggggtcaaagccacctcacccttttgaagagacaccaaacccact
taaggaggctgagaggagggggggctttctatcccaccccctcacacatt
ggaaggggcataggtccacactctcagccgagacccgaacagggagctca
tagacttcatcagtgggtgcaagaagtgaagccccactcttcttaccc
gaattcatgaaagtgtgtgtgtgctggggcgggcaactgtgaaaagtaca
aggaaagtggtttacatgaagctggaaagtcttgggagttttaaattaac
cctgaaatagtaagaacttctcattgtagttacagaacacttaacacagc
cagtggtaggagatacaactgcaagaagccatttgcttgtcaagattttt
gtcaaggtactactgttatcagctatgtagcgccccaatattttctacca
ttcagactttagaattgaagtgaagcatacagactgttattaaatcttcc
taattcctttattttggataagctaataatgtcactcagtgaatgctgaa
gtaactacggaactgtacatagtcactttataaacacactctttgttgta
gttgtggtcattgcttttgtttttgagactgggtctccctctgcctctca
agagctctgcctggcttagaactcactattgtatttagcctccgctagcc
tcggatctgctatagttctcaccctgaacctcccaactgctggtaattcc
tgatgggagacaccatgcctggcttttggagttctttgattaaaagatat
ccacatagggtggctggggagatgaatcagacagtgcttgtgttgtaagc
atgtagatctaaattttgggttcctagttcatgtctataaacatggagat
agtagagacaggagaatctctcaggcttgtctggcctgctagccagtctg
agaactctaggttcactgagagaacttgtctcaaaaaataaggtgaaaag
acaaagaagacacctgaggtttgcactctagtgtctatatgccagtgtac
acacatgcatggtacatcacacacatacatacatacatacatacatacat
gtatatatatgtatatgcacacatatacacaataaaaaaaaagggaaagt
ataaatcattagaccttgaggtcgcttagttgacagttcatggaattcta
ttctcaccactacaaaacaaaacaattagttagattatatattaagccaa
atcccagtttcctaagcaaaacatcaactacctttattttagaaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_102176916_102177957
seq2: B6Ng01-295P19.b_51_1098

seq1  GAATTCAAACATTAGCACCATACACAGTAGTTCTGAGAAAAGGCAAGCAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAACATTAGCACCATACACAGTAGTTCTGAGAAAAGGCAAGCAG  50

seq1  GTGGACAGAGTTCTCAGGGCCTTGGTCTCTGGAGAACCCCAGAACTCCAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGACAGAGTTCTCAGGGCCTTGGTCTCTGGAGAACCCCAGAACTCCAA  100

seq1  GTTGACATCTTAGCCCAATTATTTTCAGCTGCTAAAGTGCAGCCCAGAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGACATCTTAGCCCAATTATTTTCAGCTGCTAAAGTGCAGCCCAGAGA  150

seq1  CAGCTCTGAGCCTCTCTGCTATGGAGGCTGGGCTGGGGGAACCCTTGGCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTCTGAGCCTCTCTGCTATGGAGGCTGGGCTGGGGGAACCCTTGGCC  200

seq1  AGGATGCAAAAGAGCTCCTGACTTTCATTTGCATCTGGTAACCTGGGCCG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATGCAAAAGAGCTCCTGACTTTCATTTGCATCTGGTAACCTGGGCCG  250

seq1  GTTTCCGCAGAAAAGGGTCACATGGCCCATAATCCTCTCTCCCCTGATGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCCGCAGAAAAGGGTCACATGGCCCATAATCCTCTCTCCCCTGATGT  300

seq1  CTCACAAACATTGGCAGATGCCCAGTTTCCTACTACCCTCCATGTCATAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACAAACATTGGCAGATGCCCAGTTTCCTACTACCCTCCATGTCATAA  350

seq1  ACATAACACTGCTGACAGAGGTGGCTAGGGTCGGGGCATCTATAATTCCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATAACACTGCTGACAGAGGTGGCTAGGGTCGGGGCATCTATAATTCCT  400

seq1  AAGGCTTGGAGCCATAAACCACAATCCCCTTCCCTGTTTTCCACCTGCCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCTTGGAGCCATAAACCACAATCCCCTTCCCTGTTTTCCACCTGCCT  450

seq1  CTAGTGAAAATCTCCACTAAGGTGTGATACTTCAAGCTAAGAAACCAAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGTGAAAATCTCCACTAAGGTGTGATACTTCAAGCTAAGAAACCAAGA  500

seq1  AGGCTGGCTTCCAAGAGTCTTCCCTGTGACCCTCATTCATAGCAAGAGAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTGGCTTCCAAGAGTCTTCCCTGTGACCCTCATTCATAGCAAGAGAT  550

seq1  CGTAAAGACTCAAGTTCTAAGCTCAAGGCCAAGTAATTTGGATTTGGCCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTAAAGACTCAAGTTCTAAGCTCAAGGCCAAGTAATTTGGATTTGGCCA  600

seq1  AACCCCCATGTGACAGATGCTTCACTTTCTAAGACTTAAGACTGTCTGCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCCCATGTGACAGATGCTTCACTTTCTAAGACTTAAGACTGTCTGCC  650

seq1  AGTGCACAGAACGAAGCCTGAGAGGAACC-TTTTACAAGGCTGGAGAGCT  699
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  AGTGCACAGAACGAAGCCTGAGAGGAACCTTTTTACAAGGCTGGAGAGCT  700

seq1  CGTGTGTGAAAAAAGACAAG-TTTGAAAAGAGAAGCTGGGGACCCATACC  748
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  CGTGTGTGAAAAAAGACAAGTTTTGAAAAGAGAAGCTGGGGACCCATACC  750

seq1  TTGGCCTTTGGGGGCGGCCATTTCCAGGTCTGTGGGACAGTCCGCTTCTC  798
      ||||||||||||||||||||||||  ||||||||||||||||||||||||
seq2  TTGGCCTTTGGGGGCGGCCATTTCAGGGTCTGTGGGACAGTCCGCTTCTC  800

seq1  CGTTCATTCTCCAGCTGTCCAGCCACCTCCTCGGTCGCGCTGGCCGGGCC  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTTCATTCTCCAGCTGTCCAGCCACCTCCTCGGTCGCGCTGGCCGGGCC  850

seq1  ACCC-GGGGTCAAAGCCACCTCACCCTTTTGAAGAGACACCAAACCCACT  897
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCGGGGGTCAAAGCCACCTCACCCTTTTGAAGAGACACCAAACCCACT  900

seq1  TAAGGAGGCTGAGAGGA-GGGGGGCTTTCTATCCCACCCCCTCACACATG  946
      ||||||||||||||||| ||||||||||||||||||||||||||||||| 
seq2  TAAGGAGGCTGAGAGGAGGGGGGGCTTTCTATCCCACCCCCTCACACATT  950

seq1  GGAGGGGGCATAGGTCCACACTCTCAG-CGAGACCCGAACAGGAGGCTCA  995
      ||| ||||||||||||||||||||||| |||||||||||||||  |||||
seq2  GGAAGGGGCATAGGTCCACACTCTCAGCCGAGACCCGAACAGGGAGCTCA  1000

seq1  TAGACTTCATCAGTGGGTGC-AGGAGTG-AGCCCCACTCTTCTCTACCC  1042
      |||||||||||||||||||| || |||| |||||||||||||| |||||
seq2  TAGACTTCATCAGTGGGTGCAAGAAGTGAAGCCCCACTCTTCT-TACCC  1048

seq1: chr11_102373602_102374688
seq2: B6Ng01-295P19.g_71_1166 (reverse)

seq1  TTTTCT-AAATAAAGGTAGTTGATGTTTTGC-TAAGAAACTGGAATTT-G  47
      |||||| |||||||||||||||||||||||| || |||||||| |||| |
seq2  TTTTCTAAAATAAAGGTAGTTGATGTTTTGCTTAGGAAACTGGGATTTGG  50

seq1  CTT-ATATAT-ATCT-ACTTATTGTTTTGTTTTTGTAGTGGTGAGAATAG  94
      ||| |||||| |||| ||| ||||||||| ||||||||||||||||||||
seq2  CTTAATATATAATCTAACTAATTGTTTTG-TTTTGTAGTGGTGAGAATAG  99

seq1  AA-TCCATGAACTGTC-ACTAAGCGACCTC-AGGTCTAATGATTTATACT  141
      || ||||||||||||| ||||||||||||| |||||||||||||||||||
seq2  AATTCCATGAACTGTCAACTAAGCGACCTCAAGGTCTAATGATTTATACT  149

seq1  TT-CCTTTTTTTTTATTGTGTATATGTGTGCATATACATATATATACATG  190
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCTTTTTTTTTATTGTGTATATGTGTGCATATACATATATATACATG  199

seq1  TATGTATGTATGTATGTATGTATGTGTGTGATTGTACCATGCATGTGTGT  240
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  TATGTATGTATGTATGTATGTATGTGTGTGA-TGTACCATGCATGTGTGT  248

seq1  ACACTGGCATATAGACACTAGAGTGC-AACCTCAGGTGTCTTCTTTGTCT  289
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  ACACTGGCATATAGACACTAGAGTGCAAACCTCAGGTGTCTTCTTTGTCT  298

seq1  TTTCACCTTATTTTTTGAGACAAGTTCTCTCAGTGAACCTAGAGTTCTCA  339
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCACCTTATTTTTTGAGACAAGTTCTCTCAGTGAACCTAGAGTTCTCA  348

seq1  GACTGGCTAGCAGGCCAGACAAGCCTGAGAGATTCTCCTGTCTCTACTAT  389
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGGCTAGCAGGCCAGACAAGCCTGAGAGATTCTCCTGTCTCTACTAT  398

seq1  CTCCATGTTTATAGACATGAACTAGGAACCCAAAATTTAGATCTACATGC  439
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCATGTTTATAGACATGAACTAGGAACCCAAAATTTAGATCTACATGC  448

seq1  TTACAACACAAGCACTGTCTGATTCATCTCCCCAGCCACCCTATGTGGAT  489
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACAACACAAGCACTGTCTGATTCATCTCCCCAGCCACCCTATGTGGAT  498

seq1  ATCTTTTAATCAAAGAACTCCAAAAGCCAGGCATGGTGTCTCCCATCAGG  539
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTTTAATCAAAGAACTCCAAAAGCCAGGCATGGTGTCTCCCATCAGG  548

seq1  AATTACCAGCAGTTGGGAGGTTCAGGGTGAGAACTATAGCAGATCCGAGG  589
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTACCAGCAGTTGGGAGGTTCAGGGTGAGAACTATAGCAGATCCGAGG  598

seq1  CTAGCGGAGGCTAAATACAATAGTGAGTTCTAAGCCAGGCAGAGCTCTTG  639
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGCGGAGGCTAAATACAATAGTGAGTTCTAAGCCAGGCAGAGCTCTTG  648

seq1  AGAGGCAGAGGGAGACCCAGTCTCAAAAACAAAAGCAATGACCACAACTA  689
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGCAGAGGGAGACCCAGTCTCAAAAACAAAAGCAATGACCACAACTA  698

seq1  CAACAAAGAGTGTGTTTATAAAGTGACTATGTACAGTTCCGTAGTTACTT  739
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACAAAGAGTGTGTTTATAAAGTGACTATGTACAGTTCCGTAGTTACTT  748

seq1  CAGCATTCACTGAGTGACATTATTAGCTTATCCAAAATAAAGGAATTAGG  789
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCATTCACTGAGTGACATTATTAGCTTATCCAAAATAAAGGAATTAGG  798

seq1  AAGATTTAATAACAGTCTGTATGCTTCACTTCAATTCTAAAGTCTGAATG  839
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATTTAATAACAGTCTGTATGCTTCACTTCAATTCTAAAGTCTGAATG  848

seq1  GTAGAAAATATTGGGGCGCTACATAGCTGATAACAGTAGTACCTTGACAA  889
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGAAAATATTGGGGCGCTACATAGCTGATAACAGTAGTACCTTGACAA  898

seq1  AAATCTTGACAAGCAAATGGCTTCTTGCAGTTGTATCTCCTACCACTGGC  939
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCTTGACAAGCAAATGGCTTCTTGCAGTTGTATCTCCTACCACTGGC  948

seq1  TGTGTTAAGTGTTCTGTAACTACAATGAGAAGTTCTTACTATTTCAGGGT  989
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTTAAGTGTTCTGTAACTACAATGAGAAGTTCTTACTATTTCAGGGT  998

seq1  TAATTTAAAACTCCCAAGACTTTCCAGCTTCATGTAAACCACTTTCCTTG  1039
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTTAAAACTCCCAAGACTTTCCAGCTTCATGTAAACCACTTTCCTTG  1048

seq1  TACTTTTCACAGTTGCCCGCCCCAGCACACACACACTTTCATGAATTC  1087
      ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTTTCACAGTTGCCCGCCCCAGCACACACACACTTTCATGAATTC  1096