BAC Information

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BAC

Clone NameB6Ng01-296I19
Chromosome11 (Build37)
Map Location 111,737,356 - 111,738,428
singlet/doubletsinglet
Overlap genenone
Upstream geneKcnj16, Kcnj2, LOC667003, LOC100041539, LOC100041559, EG629966, LOC629967
Downstream geneLOC100041589, LOC100043020, EG668396, EG667038, LOC100041610, LOC671963, LOC667047, BC006965, Sox9
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-296I19.bB6Ng01-296I19.g
ACCGA092134GA092135
length851,063
definitionB6Ng01-296I19.b B6Ng01-296I19.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
actttgtagaccaggctggcctcgaactcagaaattcgcctgcttctgcc
tcccgagtgctgggattaaaggcgtgtgccaccac

gaattccatatgagtagtaaacattgaatcaaaaacctacccggaaggta
gtcaaccttcatcaaatacgctgaccaaacaaacacaaatgagtaacgct
tggaacaaagagaaaattggattttaagcagttgcgtttcattcctgata
tcaggccagtcacattcttcaccattgatcaaagtttttttttttttaat
cctacatcctcttcctctcagcacatctgtaaaagcagtccagtttgtac
ttaaaaacatggttgcatccggatgcagcatctttttcagcgcatacaca
aaaagagctacagaacccggagaaggccagcattgaggaaatccatcaat
gtgcttgctaatctagacaaagagaccttttgtggatagtgttcttaaag
aatttttgtatttcaaatgcatcaacttcggctcatgcgggggtatatta
tagccctgagtaagaatatgaatgctccttacttggaagggagaagagaa
actctctgccaatgtatagccttgaggctggataagcatgccatttgact
gtttcattttttttttttttctgtatgaattgcctacaagactctttatc
ttttctggacttgattaatgggagcatatgtcaatgccaggggcgtctac
cttctctgctaaccttcccttaagaggatcgcctaccacggggaacgata
aaagatagttggaatgttttatttaaaaaaaaagaattagtaagactggg
gagaaaaagatccatctatttcattgctaaacctcaaataaatgaataac
cctgtttgctttacccttggagtcctaatgtgctacaaattgatcaacaa
atgttctcccagtagagaactgtgacctattcagctccggagagcccaga
cggagttaagtcttctaaatatcacacccttggtgtttcaaacatttttc
ttttgttgctctttatttgagacatttgtcaaagaaagaaaatatatttc
catgtgggatcctctagagtacaaaagagcggatctgtctggatggtgtg
tgtgtgtgtgggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_111737356_111738428
seq2: B6Ng01-296I19.g_69_1131

seq1  GAATTCCATATGAGTAGTAAACATTGAATCAAAAACCTACCCGGAAGGTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATATGAGTAGTAAACATTGAATCAAAAACCTACCCGGAAGGTA  50

seq1  GTCAACCTTCATCAAATACGCTGACCAAACAAACACAAATGAGTAACGCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAACCTTCATCAAATACGCTGACCAAACAAACACAAATGAGTAACGCT  100

seq1  TGGAACAAAGAGAAAATTGGATTTTAAGCAGTTGCGTTTCATTCCTGATA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAACAAAGAGAAAATTGGATTTTAAGCAGTTGCGTTTCATTCCTGATA  150

seq1  TCAGGCCAGTCACATTCTTCACCATTGATCAAAGTTTTTTTTTTTTTAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGCCAGTCACATTCTTCACCATTGATCAAAGTTTTTTTTTTTTTAAT  200

seq1  CCTACATCCTCTTCCTCTCAGCACATCTGTAAAAGCAGTCCAGTTTGTAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTACATCCTCTTCCTCTCAGCACATCTGTAAAAGCAGTCCAGTTTGTAC  250

seq1  TTAAAAACATGGTTGCATCCGGATGCAGCATCTTTTTCAGCGCATACACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAAACATGGTTGCATCCGGATGCAGCATCTTTTTCAGCGCATACACA  300

seq1  AAAAGAGCTACAGAACCCGGAGAAGGCCAGCATTGAGGAAATCCATCAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGAGCTACAGAACCCGGAGAAGGCCAGCATTGAGGAAATCCATCAAT  350

seq1  GTGCTTGCTAATCTAGACAAAGAGACCTTTTGTGGATAGTGTTCTTAAAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTTGCTAATCTAGACAAAGAGACCTTTTGTGGATAGTGTTCTTAAAG  400

seq1  AATTTTTGTATTTCAAATGCATCAACTTCGGCTCATGCGGGGGTATATTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTTGTATTTCAAATGCATCAACTTCGGCTCATGCGGGGGTATATTA  450

seq1  TAGCCCTGAGTAAGAATATGAATGCTCCTTACTTGGAAGGGAGAAGAGAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCCCTGAGTAAGAATATGAATGCTCCTTACTTGGAAGGGAGAAGAGAA  500

seq1  ACTCTCTGCCAATGTATAGCCTTGAGGCTGGATAAGCATGCCATTTGACT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTCTGCCAATGTATAGCCTTGAGGCTGGATAAGCATGCCATTTGACT  550

seq1  GTTTCATTTTTTTTTTTTTTCTGTATGAATTGCCTACAAGACTCTTTATC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCATTTTTTTTTTTTTTCTGTATGAATTGCCTACAAGACTCTTTATC  600

seq1  TTTTCTGGACTTGATTAATGGGAGCATATGTCAATGCCAGGGGCGTCTAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTGGACTTGATTAATGGGAGCATATGTCAATGCCAGGGGCGTCTAC  650

seq1  CTTCTCTGCTAACCTTCCCTTAAGAGGATCGCCTACCACGGGGAACGATA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTCTGCTAACCTTCCCTTAAGAGGATCGCCTACCACGGGGAACGATA  700

seq1  AAAGATAGTTGGAATGTTTTATTTAAAAAAAAAGAATTAGTAAGACTGGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGATAGTTGGAATGTTTTATTTAAAAAAAAAGAATTAGTAAGACTGGG  750

seq1  GAGAAAAAGATCCATCTATTTCATTGCTAAACCTCAAATAAATGAATAAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAAAAGATCCATCTATTTCATTGCTAAACCTCAAATAAATGAATAAC  800

seq1  CCTGTTTGCTTTACCCTTGGAGTCCTAATGTGCTACAAATTGATCAACAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTTTGCTTTACCCTTGGAGTCCTAATGTGCTACAAATTGATCAACAA  850

seq1  ATGTTCTCCCAGTAGAGAACTGTGACCTATTCAGCTCCGGAGAGCCCAAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  ATGTTCTCCCAGTAGAGAACTGTGACCTATTCAGCTCCGGAGAGCCC-AG  899

seq1  ACGGAGTTAAGTCTCTTAAAATATCACACCCTTGGTGTTTCAAACA-TTT  949
      |||||||||||||| |  |||||||||||||||||||||||||||| |||
seq2  ACGGAGTTAAGTCT-TCTAAATATCACACCCTTGGTGTTTCAAACATTTT  948

seq1  TCTTTTGTTGCTCTTTAATTTGAGACATTTGTCAAAGAAAGAAAATATAT  999
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  TCTTTTGTTGCTCTTT-ATTTGAGACATTTGTCAAAGAAAGAAAATATAT  997

seq1  TT-CATGTGGGAATTCCCTCCTAGAGTTAACAAAAGAAGCGGATCTGTCT  1048
      || |||||||||  |||   |||||||  ||||||| |||||||||||||
seq2  TTCCATGTGGGA--TCC--TCTAGAGT--ACAAAAG-AGCGGATCTGTCT  1040

seq1  GGAGTGTGTGTGTGTGTGTGTGGGG  1073
      ||| || ||||||||||||||||||
seq2  GGA-TG-GTGTGTGTGTGTGTGGGG  1063


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