BAC Information

Click to search

BAC

Clone NameB6Ng01-300B19
Chromosome11 (Build37)
Map Location 74,882,532 - 75,066,583
singlet/doubletdoublet
Overlap geneSmg6, LOC627835, Hic1, LOC668604, Ovca2, Dph1, Rtn4rl1
Upstream geneOTTMUSG00000006163, LOC668567, Olfr400-ps1, Olfr401, Olfr402, Olfr403, Olfr43, Olfr404-ps1, Olfr405-ps1, Olfr406, Olfr407-ps1, Olfr59, Olfr408-ps1, Olfr409-ps1, LOC193079, Olfr410, Olfr411, Olfr412, Garnl4, E130309D14Rik, 1300001I01Rik, Pafah1b1, Mett10d, Mnt, Rutbc1, Tsr1, Srr, LOC100042478, LOC100043429
Downstream geneRpa1, Smyd4, Serpinf1, LOC100043447, Serpinf2, Wdr81, LOC100042498, 2010305C02Rik, Prpf8, Rilp, Scarf1, Slc43a2, Pitpna, LOC654359, Pps, Myo1c, Crk, Ywhae, Doc2b, Rph3al, 1700016K19Rik, 1500005K14Rik, Vps53, LOC668634, 2310047D13Rik, Gemin4, Dbil5, Glod4, Rnmtl1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-300B19.bB6Ng01-300B19.g
ACCGA094772GA094773
length1,147812
definitionB6Ng01-300B19.b B6Ng01-300B19.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(75,065,436 - 75,066,583)(74,882,532 - 74,883,342)
sequence
gaattccaggatagcctggactaactacctagagaaaccctgtctggaaa
aacaaaaccaaaaaattttaaactaaaacaaaaagccaacaaagttatgg
cagaatggtgactcaggcctgtagttctccagtacttaggaggcccaggc
cagcatggactatgtgagatcctgtttcaaattaaaacacgcccgggcgg
tggtggtacatgcctttaatcccagcactcgggaggcagaggcaggcgga
tttctgagtacgaggccagcctggtctacagagtgagttccaggacagcc
agggcttcacaaagaaaccctgtctcgaaaaacaaaacaaaacaaaacaa
aacaaaaaattaaaacaagacaaaagaatgatggcagaagttggtgatat
ttgttgtctcctaggaggcaaggctgacaggaaactgtgggactggggtg
aaggaaactcccctctctatatgccagggacttttgatttattactgtgt
caatgtatctattaattctttaaggtcagttaaattaaattaaataacac
cgaaaacatctttgtctaaattcctgatctttctttagaccaatttcatt
gagatcaggctgccttgatgaacactgacaagttaccttctaggaagttt
agcgtcacagcctttagctttaaaagccacacaagcagacccccagccac
ggggcttttagagaggcagccctttcctttgctgtctttccatccaaact
gggagctactcactcaaaggagaccagaacttggagacagtggatggaag
catgtgttaaaccagctctgcctgcatcctagggatactcacgtttattt
cttgaatagctcccccaaatcattacaaattcacacccccattctaccag
tgagaacaacagaagctcaacacacgacagccatttgcccaggatggtaa
ccactgtgattcaaacaagatgggagctggcagccatgatgggaggaccc
ctggctcttaaggagaacccgctcacttcgagaccatcttcttgctcccc
cggtggacagtctccctcctccccagtctctggttatttactccacctct
agcttcaggctcaggaaggcctgatatgacaaggcagatgggaggaa
gaattctgtatgtatatgtccagactctaggtaaggttccatagattggt
gaagctcctgttttcttcagtttttgtcttcaaattcattgactgttttt
ctgagcctcccttcctccaccccattgttatggtttttgtttatgctttt
tttggattttttttttttttaaataaagtctcactatatagtcctggctg
gcctggaactcacattaagccaggcatccagaggtgggaatatttgttag
aatggcttttaggcagtggtccagctagtttaacaatggctgtctaccag
tggaagttccaagaatccaatagttgttcagtccacaaggctgaatgttt
cagcaagtcttccaaaaagtaggctttaaacagtgaaggaatagagttgt
tagggagagctagcaggcaaagagagagagcaagcttcctttgtccaagt
actttctataggctgccagcagaaggtgtggcccagattaacggcagatc
ttcccattttaggtgtctctttctacttcaaagattcagattaaaagtga
gtcttcccatgtcaaatgcctttaaaaaaaaaaaaaaaaaaaaaaagtcc
cgcatagatgtgctcagccattggattttagttaattcagatgtagtcac
attgacaaccaagagtagctatcatacccagcttaggtttttttatgggg
gagagctgttttgtttgttgttgggttttttgttttctttttgttttgtt
ttttaaagacaaatctctcattctgtactcatgttggcctcagattcact
atgtaggacagg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_75065436_75066583
seq2: B6Ng01-300B19.b_48_1194 (reverse)

seq1  TTCCTTCCCCATCTGCCTTGTCCTTTCTCAGGCC-TCCTGAGCCTGAAGC  49
      |||||  |||||||||||||||   | ||||||| |||||||||||||| 
seq2  TTCCT--CCCATCTGCCTTGTC--ATATCAGGCCTTCCTGAGCCTGAAG-  45

seq1  CTAAGGAGTGGAAGTAAATAA-CAGAGACTGGGGAGGAGGGAGACTGTCC  98
      |||  |||  | ||||||||| ||||||||||||||||||||||||||||
seq2  CTA--GAGGTGGAGTAAATAACCAGAGACTGGGGAGGAGGGAGACTGTCC  93

seq1  ACC-GGGGAGCAAG-AGATGGTCTCGGAGTGAGC-GGTTCTCCTTAAGAG  145
      ||| |||||||||| ||||||||||| ||||||| |||||||||||||||
seq2  ACCGGGGGAGCAAGAAGATGGTCTCGAAGTGAGCGGGTTCTCCTTAAGAG  143

seq1  CCAGGGGTCCTCCCATCATGGCTGCCAGCT-CCATCTTGTTTGAATCACA  194
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  CCAGGGGTCCTCCCATCATGGCTGCCAGCTCCCATCTTGTTTGAATCACA  193

seq1  GTGGTTACCATCCTGGGCAAATGGCTGTCGTGTGTTGAGCTTCTGTTGTT  244
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTTACCATCCTGGGCAAATGGCTGTCGTGTGTTGAGCTTCTGTTGTT  243

seq1  CTCACTGGTAGAATGGGGGTGTGAATTTGTAATGATTTGGGGGAGCTATT  294
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACTGGTAGAATGGGGGTGTGAATTTGTAATGATTTGGGGGAGCTATT  293

seq1  CAAGAAATAAACGTGAGTATCCCTAGGATGCAGGCAGAGCTGGTTTAACA  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAAATAAACGTGAGTATCCCTAGGATGCAGGCAGAGCTGGTTTAACA  343

seq1  CATGCTTCCATCCACTGTCTCCAAGTTCTGGTCTCCTTTGAGTGAGTAGC  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCTTCCATCCACTGTCTCCAAGTTCTGGTCTCCTTTGAGTGAGTAGC  393

seq1  TCCCAGTTTGGATGGAAAGACAGCAAAGGAAAGGGCTGCCTCTCTAAAAG  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAGTTTGGATGGAAAGACAGCAAAGGAAAGGGCTGCCTCTCTAAAAG  443

seq1  CCCCGTGGCTGGGGGTCTGCTTGTGTGGCTTTTAAAGCTAAAGGCTGTGA  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCGTGGCTGGGGGTCTGCTTGTGTGGCTTTTAAAGCTAAAGGCTGTGA  493

seq1  CGCTAAACTTCCTAGAAGGTAACTTGTCAGTGTTCATCAAGGCAGCCTGA  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCTAAACTTCCTAGAAGGTAACTTGTCAGTGTTCATCAAGGCAGCCTGA  543

seq1  TCTCAATGAAATTGGTCTAAAGAAAGATCAGGAATTTAGACAAAGATGTT  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAATGAAATTGGTCTAAAGAAAGATCAGGAATTTAGACAAAGATGTT  593

seq1  TTCGGTGTTATTTAATTTAATTTAACTGACCTTAAAGAATTAATAGATAC  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCGGTGTTATTTAATTTAATTTAACTGACCTTAAAGAATTAATAGATAC  643

seq1  ATTGACACAGTAATAAATCAAAAGTCCCTGGCATATAGAGAGGGGAGTTT  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGACACAGTAATAAATCAAAAGTCCCTGGCATATAGAGAGGGGAGTTT  693

seq1  CCTTCACCCCAGTCCCACAGTTTCCTGTCAGCCTTGCCTCCTAGGAGACA  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCACCCCAGTCCCACAGTTTCCTGTCAGCCTTGCCTCCTAGGAGACA  743

seq1  ACAAATATCACCAACTTCTGCCATCATTCTTTTGTCTTGTTTTAATTTTT  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAATATCACCAACTTCTGCCATCATTCTTTTGTCTTGTTTTAATTTTT  793

seq1  TGTTTTGTTTTGTTTTGTTTTGTTTTTCGAGACAGGGTTTCTTTGTGAAG  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTGTTTTGTTTTGTTTTGTTTTTCGAGACAGGGTTTCTTTGTGAAG  843

seq1  CCCTGGCTGTCCTGGAACTCACTCTGTAGACCAGGCTGGCCTCGTACTCA  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGGCTGTCCTGGAACTCACTCTGTAGACCAGGCTGGCCTCGTACTCA  893

seq1  GAAATCCGCCTGCCTCTGCCTCCCGAGTGCTGGGATTAAAGGCATGTACC  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATCCGCCTGCCTCTGCCTCCCGAGTGCTGGGATTAAAGGCATGTACC  943

seq1  ACCACCGCCCGGGCGTGTTTTAATTTGAAACAGGATCTCACATAGTCCAT  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACCGCCCGGGCGTGTTTTAATTTGAAACAGGATCTCACATAGTCCAT  993

seq1  GCTGGCCTGGGCCTCCTAAGTACTGGAGAACTACAGGCCTGAGTCACCAT  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGCCTGGGCCTCCTAAGTACTGGAGAACTACAGGCCTGAGTCACCAT  1043

seq1  TCTGCCATAACTTTGTTGGCTTTTTGTTTTAGTTTAAAATTTTTTGGTTT  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCCATAACTTTGTTGGCTTTTTGTTTTAGTTTAAAATTTTTTGGTTT  1093

seq1  TGTTTTTCCAGACAGGGTTTCTCTAGGTAGTTAGTCCAGGCTATCCTGGA  1144
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTTCCAGACAGGGTTTCTCTAGGTAGTTAGTCCAGGCTATCCTGGA  1143

seq1  ATTC  1148
      ||||
seq2  ATTC  1147

seq1: chr11_74882532_74883342
seq2: B6Ng01-300B19.g_70_881

seq1  GAATTCTGTATGTATATGTCCAGACTCTAGGTAAGGTTCCATAGATTGGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGTATGTATATGTCCAGACTCTAGGTAAGGTTCCATAGATTGGT  50

seq1  GAAGCTCCTGTTTTCTTCAGTTTTTGTCTTCAAATTCATTGACTGTTTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCTCCTGTTTTCTTCAGTTTTTGTCTTCAAATTCATTGACTGTTTTT  100

seq1  CTGAGCCTCCCTTCCTCCACCCCATTGTTATGGTTTTTGTTTATGCTTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGCCTCCCTTCCTCCACCCCATTGTTATGGTTTTTGTTTATGCTTTT  150

seq1  TTTGGATTTTTTTTTTTTTTAAATAAAGTCTCACTATATAGTCCTGGCTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGATTTTTTTTTTTTTTAAATAAAGTCTCACTATATAGTCCTGGCTG  200

seq1  GCCTGGAACTCACATTAAGCCAGGCATCCAGAGGTGGGAATATTTGTTAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGGAACTCACATTAAGCCAGGCATCCAGAGGTGGGAATATTTGTTAG  250

seq1  AATGGCTTTTAGGCAGTGGTCCAGCTAGTTTAACAATGGCTGTCTACCAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGCTTTTAGGCAGTGGTCCAGCTAGTTTAACAATGGCTGTCTACCAG  300

seq1  TGGAAGTTCCAAGAATCCAATAGTTGTTCAGTCCACAAGGCTGAATGTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAGTTCCAAGAATCCAATAGTTGTTCAGTCCACAAGGCTGAATGTTT  350

seq1  CAGCAAGTCTTCCAAAAAGTAGGCTTTAAACAGTGAAGGAATAGAGTTGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAAGTCTTCCAAAAAGTAGGCTTTAAACAGTGAAGGAATAGAGTTGT  400

seq1  TAGGGAGAGCTAGCAGGCAAAGAGAGAGAGCAAGCTTCCTTTGTCCAAGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGGAGAGCTAGCAGGCAAAGAGAGAGAGCAAGCTTCCTTTGTCCAAGT  450

seq1  ACTTTCTATAGGCTGCCAGCAGAAGGTGTGGCCCAGATTAACGGCAGATC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTCTATAGGCTGCCAGCAGAAGGTGTGGCCCAGATTAACGGCAGATC  500

seq1  TTCCCATTTTAGGTGTCTCTTTCTACTTCAAAGATTCAGATTAAAAGTGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCATTTTAGGTGTCTCTTTCTACTTCAAAGATTCAGATTAAAAGTGA  550

seq1  GTCTTCCCATGTCAAATGCCTTTAAAAAAAAAAAAAAAAAAAAAAAGTCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTCCCATGTCAAATGCCTTTAAAAAAAAAAAAAAAAAAAAAAAGTCC  600

seq1  CGCATAGATGTGCTCAGCCATTGGATTTTAGTTAATTCAGATGTAGTCAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCATAGATGTGCTCAGCCATTGGATTTTAGTTAATTCAGATGTAGTCAC  650

seq1  ATTGACAACCAAGAGTAGCTATCATACCCAGCTTAGGTTTTTTTATGGGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGACAACCAAGAGTAGCTATCATACCCAGCTTAGGTTTTTTTATGGGG  700

seq1  GAGAGCTGTTTTGTTTGTTGTTGGGTTTTTTGTTTTC-TTTTGTTTTGTT  749
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  GAGAGCTGTTTTGTTTGTTGTTGGGTTTTTTGTTTTCTTTTTGTTTTGTT  750

seq1  TTTTTGAGAC-AAGCTCTCATTCTGTAACTCATGTTGGCCTCAGATTCAC  798
      ||||  |||| || |||||||||||| |||||||||||||||||||||||
seq2  TTTTAAAGACAAATCTCTCATTCTGT-ACTCATGTTGGCCTCAGATTCAC  799

seq1  TATGTAGGACAGG  811
      |||||||||||||
seq2  TATGTAGGACAGG  812