BAC Information

Click to search

BAC

Clone NameB6Ng01-300M13
Chromosome11 (Build37)
Map Location 9,489,520 - 9,490,608
singlet/doubletsinglet
Overlap geneAbca13
Upstream geneTns3, LOC638720, Pkd1l1, LOC624800, Hus1, Sunc1, OTTMUSG00000005148, Upp1, LOC626887, LOC100041469
Downstream geneLOC665435, LOC382483
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-300M13.bB6Ng01-300M13.g
ACCGA095270GA095271
length1,089433
definitionB6Ng01-300M13.b B6Ng01-300M13.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctttgactgagtctaggaaccaaattagcacaaggcagatttata
atagagtaccatctaatagtttaattgaaaatagagttctctgtcatatg
atacatcctgaccacagtttcccctccctacactccttatagttctcctg
aaccacttcttttctcaggtttactcctccatttcctttcagaaaagagc
aggcctccaagagacaacaaccaaacatgacaaaacaagatactctatag
caaggctaaagtcctgctgttgagactggacaaagcaaccagaagaaaag
aatctcaagatcaggcaaacagagccagagacacacctacttccactctt
agaagtctcacaaccaccaagctagcagccataacaaacacacagaggac
ctggtgtagacccttaaggccccacacttgatgctttagtctctgtgaac
cctgtttaattgactcagtgggccatattcttccagtgtcttccatctcc
tctgactcttataatctttcctccccttctttcacaggattccccaaact
ctgacaggacaaacctgatggagttctccaatttagactctttctggctg
ttggtcactgcctctgctctttatggtgccagaggaaagttctctgatga
taaatagacaaggcagaatagcggtatagcagaatattagtaggaatcat
ttcattaactttcttttgggtcagtcatagttggttcttttatatgtaaa
tgagattctttagaaaaaatgcagtctgaagaaatggcacatagaatgat
tttagataaaaacgtttaaatttgcaaataaataataggacagagagatc
tctggaggagatcttaggagggtatgctttagacttggcactgagagata
tgtgagcttgtaaaacccattggaacatcaggacaacaggcatgggtttg
ttatttagtgcacgatagttctagtatccagtttctggtgattttagggg
ctttctttactccctcccccctcatacctctcctctctcttctctcctac
tccccttctctcctttcctcctcccctacgtccttctct

atattgctgttcttcctatggggctgcaaaccccttcaactccttgggtc
ctttttctagctcctttattggagaccctgtgctcagtccaatggtaggc
tgtgaggatccacctctgtatttgtcaggcactggtagagcctctcaaga
gacagctataaccggcttttttcagtaagtacttgttggcattcacaata
gcatctgggtttggtgactgtatatgggatggattcccaggtgggacaat
cagtggatcatcataccttcaggtggaactcatggctccagctgcatatg
tagcagaggatggccttgtaggtcatcaatgggaggagagtcctttggcc
ctgtgaaggcactatgcctcattgtagggaaatgccagggccaggaaaca
agagtgggtgggttggtgttggggaagaatagg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_9489520_9490608
seq2: B6Ng01-300M13.b_44_1132

seq1  GAATTCTTTGACTGAGTCTAGGAACCAAATTAGCACAAGGCAGATTTATA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTGACTGAGTCTAGGAACCAAATTAGCACAAGGCAGATTTATA  50

seq1  ATAGAGTACCATCTAATAGTTTAATTGAAAATAGAGTTCTCTGTCATATG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGAGTACCATCTAATAGTTTAATTGAAAATAGAGTTCTCTGTCATATG  100

seq1  ATACATCCTGACCACAGTTTCCCCTCCCTACACTCCTTATAGTTCTCCTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACATCCTGACCACAGTTTCCCCTCCCTACACTCCTTATAGTTCTCCTG  150

seq1  AACCACTTCTTTTCTCAGGTTTACTCCTCCATTTCCTTTCAGAAAAGAGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCACTTCTTTTCTCAGGTTTACTCCTCCATTTCCTTTCAGAAAAGAGC  200

seq1  AGGCCTCCAAGAGACAACAACCAAACATGACAAAACAAGATACTCTATAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCTCCAAGAGACAACAACCAAACATGACAAAACAAGATACTCTATAG  250

seq1  CAAGGCTAAAGTCCTGCTGTTGAGACTGGACAAAGCAACCAGAAGAAAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGCTAAAGTCCTGCTGTTGAGACTGGACAAAGCAACCAGAAGAAAAG  300

seq1  AATCTCAAGATCAGGCAAACAGAGCCAGAGACACACCTACTTCCACTCTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTCAAGATCAGGCAAACAGAGCCAGAGACACACCTACTTCCACTCTT  350

seq1  AGAAGTCTCACAACCACCAAGCTAGCAGCCATAACAAACACACAGAGGAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGTCTCACAACCACCAAGCTAGCAGCCATAACAAACACACAGAGGAC  400

seq1  CTGGTGTAGACCCTTAAGGCCCCACACTTGATGCTTTAGTCTCTGTGAAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTGTAGACCCTTAAGGCCCCACACTTGATGCTTTAGTCTCTGTGAAC  450

seq1  CCTGTTTAATTGACTCAGTGGGCCATATTCTTCCAGTGTCTTCCATCTCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTTTAATTGACTCAGTGGGCCATATTCTTCCAGTGTCTTCCATCTCC  500

seq1  TCTGACTCTTATAATCTTTCCTCCCCTTCTTTCACAGGATTCCCCAAACT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGACTCTTATAATCTTTCCTCCCCTTCTTTCACAGGATTCCCCAAACT  550

seq1  CTGACAGGACAAACCTGATGGAGTTCTCCAATTTAGACTCTTTCTGGCTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACAGGACAAACCTGATGGAGTTCTCCAATTTAGACTCTTTCTGGCTG  600

seq1  TTGGTCACTGCCTCTGCTCTTTATGGTGCCAGAGGAAAGTTCTCTGATGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTCACTGCCTCTGCTCTTTATGGTGCCAGAGGAAAGTTCTCTGATGA  650

seq1  TAAATAGACAAGGCAGAATAGCGGTATAGCAGAATATTAGTAGGAATCAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATAGACAAGGCAGAATAGCGGTATAGCAGAATATTAGTAGGAATCAT  700

seq1  TTCATTAACTTTCTTTTGGGTCAGTCATAGTTGGTTCTTTTATATGTAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATTAACTTTCTTTTGGGTCAGTCATAGTTGGTTCTTTTATATGTAAA  750

seq1  TGAGATTCTTTAGAAAAAATGCAGTCTGAAGAAATGGCACATAGAATGAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGATTCTTTAGAAAAAATGCAGTCTGAAGAAATGGCACATAGAATGAT  800

seq1  TTTAGATAAAAACGTTTAAATTTGCAAATAAATAATAGGACAGAGAGATC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGATAAAAACGTTTAAATTTGCAAATAAATAATAGGACAGAGAGATC  850

seq1  TCTGGAGGAGATCTTAGGAGGGTATGCTTTAGACTTGGCACTGAGAGATA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGAGGAGATCTTAGGAGGGTATGCTTTAGACTTGGCACTGAGAGATA  900

seq1  TGTGAGCTTGTAAAACCCATTGGAACATCAGGACAACAGGCATGGGTTTG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAGCTTGTAAAACCCATTGGAACATCAGGACAACAGGCATGGGTTTG  950

seq1  TTATTTAGTGCACGATAGTTCTAGTATCCAGTTTCTGGTGATTTTAAGGG  1000
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  TTATTTAGTGCACGATAGTTCTAGTATCCAGTTTCTGGTGATTTT-AGGG  999

seq1  GCTTTCTTTACCTCCCTCCCCCCTC-TCCCTCTCCCTCTCTCTTTTTCTC  1049
      |||||||||| |||||||||||||| | ||||| ||||||||   |||||
seq2  GCTTTCTTTA-CTCCCTCCCCCCTCATACCTCT-CCTCTCTC---TTCTC  1044

seq1  TCTTTCTCCC--TCTCTCCTTTCCTCCTCCCCT---TCCTTCTCT  1089
      || | |||||  |||||||||||||||||||||   |||||||||
seq2  TCCTACTCCCCTTCTCTCCTTTCCTCCTCCCCTACGTCCTTCTCT  1089


| Home | SequenceCutter | Blast | Download |