BAC Information

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BAC

Clone NameB6Ng01-301N01
Chromosome11 (Build37)
Map Location 56,621,916 - 56,735,269
singlet/doubletdoublet
Overlap genenone
Upstream geneNmur2, LOC100040816, LOC624168
Downstream geneGria1, LOC667878, 1810073G14Rik, Mfap3, Galnt10, Sap30l, Hand1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-301N01.bB6Ng01-301N01.g
ACCGA096031GA096032
length1,1711,103
definitionB6Ng01-301N01.b B6Ng01-301N01.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(56,734,100 - 56,735,269)(56,621,916 - 56,623,013)
sequence
gaattctgacattatcaaaaaccctggagccaaccatgcctgatgtcatt
actgaatatcttcaacttcatgagccagtggtatttctagtgtttggagt
gaagactggactctgagagaaggttcttactggacatcatttggatagtg
aggggcagagactgaatactgacttgggtctttgaaatctgagttcagag
gtcattttatccctctaatgaagagatggtattttatgaagtcagaggaa
gcttgtgagaaattaagttctcgatagcttggggaaggaggcctgtactg
gaatagtgcacagagacagagatacatactttgctggcagtggcggtgta
acacagcagcaatcccattttgattctggctttgcaaacatgcagaactg
tttcaggcttcaggtgctcaggtgtgattgattagtagaacagaaagggt
ggtgctgggtgcttgtaagtgagggtatctagagctctcatcgttcagtg
ttcatgatggtggcaggaagaagtcctgatgcagttaaatatacgtacat
ggccagtatgctggtggtagccacagcttcctctggtgggaaagcaggct
aggtggacctcagatgagtagtccagtacatagcaaccattcagagatgg
ccaagcctttcagttggctctcacatgacttctgattgcccatgataatc
agccttcaagagatactgaaaggccatttgacttttcttggggatcattg
tcttgcaaaagccaaatgctgctcaatggggcagaaatgagagaattcag
cactgctaaacatggctccttgacataaacacaagacactaccgccaagt
cagaaatcagtgtcttttctgttctggatggttttgtccctcagttttct
ctcctggtgctccaggagggacacactaggtcttcacctatctcagagtc
tgcatgtcttgctcgatgccctgttgtcctcgacactgtgataggttgag
tggtaatatagcttttaaaaaaaaagaacaaataacgttatttgatcaaa
tatgtcatggaatggccaaagaaaattaggttccatatgttatattttcc
cctttgcattccctgacaaataggataattcctcaaaactgaatggtgga
atggctttgtggaatgaagaa

gaattccaaataccactgaccacctcagcacctatttaggaaaacatgac
aatctctgaagtgaacacactgcagggaatacctcttcagctgatacaga
agaaataaatcgaagacatgtaactagcatccttccatatgcccactact
gtgtggaggtttcgtataggtgggagatccacagtgggatgagtcctata
cttagtgagcctctttttttatgtctgaccaatgggtttagtgtctctat
tctcaaattagctgcagtgtgccattgcccattaagtctggagtggtaaa
taccaagggctggggatcagactcatagtgtagactatggagaaaaagta
gaagtggaaaaaatccagggagaaagtcaaaatagaggaagataaataac
aacatcaaagaaggtttgagggggctggggagattcatcagtagataaag
cctttgctatccaaaactattttacctttgttcagacctacatcaaaaca
aatgtagtagaacagcatgtaaccttagagtacctctattgggcattgga
ggaaagtcaggagaagcccccggcacaaggcagcagtggacagccaatag
agagaccatgcctcaaggaaggaagtagatgagtctggacactcaaggct
gtcctctgacatccacatgtgagtcatggcatgtgtgtgcctctaatcac
acattctaaggtacacatagtcatacatgcacacaaaaaatcaataaatg
taaaaggtttgaagcaacttttcaaggttggatgcatatttgggtatgct
aacaagatcactctttattgtgagaaatgagcgatcatggacattaaatt
aattgtcaccagagctcagtcatgcctgtttttcttcaagactaactctg
cattcaaacaagatcatctgggatgacatctgaatgccaaaagtattggt
tagcacaacttcatgagaacatttttctttttcacctccacttattaagg
ccagatgtcacagctatcgggtacattcaaacttctaagtagataaggaa
aacaggtatcagtcgggaatctgggaatcagaaaaatgggcactgtcttt
gta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_56734100_56735269
seq2: B6Ng01-301N01.b_47_1217 (reverse)

seq1  TTCTTCATTCACAAAAGCCATTCTACCATTTCATTTTTTGAGG-ATTATC  49
      ||||||||||   |||||||||| |||| ||||  |||||||| ||||||
seq2  TTCTTCATTCCACAAAGCCATTCCACCA-TTCA-GTTTTGAGGAATTATC  48

seq1  CTTATTGTCAGGG-ATCCAAAGGGGAAAATAT-ACATATGGAA-CTTATT  96
      ||  ||||||||| || ||||||||||||||| |||||||||| || |||
seq2  CTATTTGTCAGGGAATGCAAAGGGGAAAATATAACATATGGAACCTAATT  98

seq1  TTCTTT-GCCATTCCATTGAACATATTTGATCAAAT-ACG-TATTTGTTC  143
      |||||| ||||||||||   |||||||||||||||| ||| |||||||||
seq2  TTCTTTGGCCATTCCAT--GACATATTTGATCAAATAACGTTATTTGTTC  146

seq1  -TTTTTTTTAAAAGCTATATTTACCACTCAACCTTATCACAGTGTCGAGG  192
       |||||||||||||||||| ||||||||||||| ||||||||||||||||
seq2  TTTTTTTTTAAAAGCTATA-TTACCACTCAACC-TATCACAGTGTCGAGG  194

seq1  ACAACAGGGCATCGAGCAAGACATGCAGACTCCTGAGATAGGTGAAGACC  242
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  ACAACAGGGCATCGAGCAAGACATGCAGACT-CTGAGATAGGTGAAGACC  243

seq1  TAGTGTGTCCCTCCTGGAGCACCAGGAGAGAAAACTGAGGGACAAAACCA  292
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTGTGTCCCTCCTGGAGCACCAGGAGAGAAAACTGAGGGACAAAACCA  293

seq1  TCCAGAACAGAAAAGACACTGATTTCTGACTTGGCGGTAGTGTCTTGTGT  342
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGAACAGAAAAGACACTGATTTCTGACTTGGCGGTAGTGTCTTGTGT  343

seq1  TTATGTCAAGGAGCCATGTTTAGCAGTGCTGAATTCTCTCATTTCTGCCC  392
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGTCAAGGAGCCATGTTTAGCAGTGCTGAATTCTCTCATTTCTGCCC  393

seq1  CATTGAGCAGCATTTGGCTTTTGCAAGACAATGATCCCCAAGAAAAGTCA  442
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGAGCAGCATTTGGCTTTTGCAAGACAATGATCCCCAAGAAAAGTCA  443

seq1  AATGGCCTTTCAGTATCTCTTGAAGGCTGATTATCATGGGCAATCAGAAG  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGCCTTTCAGTATCTCTTGAAGGCTGATTATCATGGGCAATCAGAAG  493

seq1  TCATGTGAGAGCCAACTGAAAGGCTTGGCCATCTCTGAATGGTTGCTATG  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGTGAGAGCCAACTGAAAGGCTTGGCCATCTCTGAATGGTTGCTATG  543

seq1  TACTGGACTACTCATCTGAGGTCCACCTAGCCTGCTTTCCCACCAGAGGA  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGGACTACTCATCTGAGGTCCACCTAGCCTGCTTTCCCACCAGAGGA  593

seq1  AGCTGTGGCTACCACCAGCATACTGGCCATGTACGTATATTTAACTGCAT  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGTGGCTACCACCAGCATACTGGCCATGTACGTATATTTAACTGCAT  643

seq1  CAGGACTTCTTCCTGCCACCATCATGAACACTGAACGATGAGAGCTCTAG  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGACTTCTTCCTGCCACCATCATGAACACTGAACGATGAGAGCTCTAG  693

seq1  ATACCCTCACTTACAAGCACCCAGCACCACCCTTTCTGTTCTACTAATCA  742
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACCCTCACTTACAAGCACCCAGCACCACCCTTTCTGTTCTACTAATCA  743

seq1  ATCACACCTGAGCACCTGAAGCCTGAAACAGTTCTGCATGTTTGCAAAGC  792
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCACACCTGAGCACCTGAAGCCTGAAACAGTTCTGCATGTTTGCAAAGC  793

seq1  CAGAATCAAAATGGGATTGCTGCTGTGTTACACCGCCACTGCCAGCAAAG  842
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAATCAAAATGGGATTGCTGCTGTGTTACACCGCCACTGCCAGCAAAG  843

seq1  TATGTATCTCTGTCTCTGTGCACTATTCCAGTACAGGCCTCCTTCCCCAA  892
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTATCTCTGTCTCTGTGCACTATTCCAGTACAGGCCTCCTTCCCCAA  893

seq1  GCTATCGAGAACTTAATTTCTCACAAGCTTCCTCTGACTTCATAAAATAC  942
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTATCGAGAACTTAATTTCTCACAAGCTTCCTCTGACTTCATAAAATAC  943

seq1  CATCTCTTCATTAGAGGGATAAAATGACCTCTGAACTCAGATTTCAAAGA  992
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTCTTCATTAGAGGGATAAAATGACCTCTGAACTCAGATTTCAAAGA  993

seq1  CCCAAGTCAGTATTCAGTCTCTGCCCCTCACTATCCAAATGATGTCCAGT  1042
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAAGTCAGTATTCAGTCTCTGCCCCTCACTATCCAAATGATGTCCAGT  1043

seq1  AAGAACCTTCTCTCAGAGTCCAGTCTTCACTCCAAACACTAGAAATACCA  1092
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAACCTTCTCTCAGAGTCCAGTCTTCACTCCAAACACTAGAAATACCA  1093

seq1  CTGGCTCATGAAGTTGAAGATATTCAGTAATGACATCAGGCATGGTTGGC  1142
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCTCATGAAGTTGAAGATATTCAGTAATGACATCAGGCATGGTTGGC  1143

seq1  TCCAGGGTTTTTGATAATGTCAGAATTC  1170
      ||||||||||||||||||||||||||||
seq2  TCCAGGGTTTTTGATAATGTCAGAATTC  1171


seq1: chr11_56621916_56623013
seq2: B6Ng01-301N01.g_67_1169

seq1  GAATTCCAAATACCACTGACCACCTCAGCACCTATTTAGGAAAACATGAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAAATACCACTGACCACCTCAGCACCTATTTAGGAAAACATGAC  50

seq1  AATCTCTGAAGTGAACACACTGCAGGGAATACCTCTTCAGCTGATACAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTCTGAAGTGAACACACTGCAGGGAATACCTCTTCAGCTGATACAGA  100

seq1  AGAAATAAATCGAAGACATGTAACTAGCATCCTTCCATATGCCCACTACT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAATAAATCGAAGACATGTAACTAGCATCCTTCCATATGCCCACTACT  150

seq1  GTGTGGAGGTTTCGTATAGGTGGGAGATCCACAGTGGGATGAGTCCTATA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGGAGGTTTCGTATAGGTGGGAGATCCACAGTGGGATGAGTCCTATA  200

seq1  CTTAGTGAGCCTCTTTTTTTATGTCTGACCAATGGGTTTAGTGTCTCTAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGTGAGCCTCTTTTTTTATGTCTGACCAATGGGTTTAGTGTCTCTAT  250

seq1  TCTCAAATTAGCTGCAGTGTGCCATTGCCCATTAAGTCTGGAGTGGTAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAAATTAGCTGCAGTGTGCCATTGCCCATTAAGTCTGGAGTGGTAAA  300

seq1  TACCAAGGGCTGGGGATCAGACTCATAGTGTAGACTATGGAGAAAAAGTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCAAGGGCTGGGGATCAGACTCATAGTGTAGACTATGGAGAAAAAGTA  350

seq1  GAAGTGGAAAAAATCCAGGGAGAAAGTCAAAATAGAGGAAGATAAATAAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTGGAAAAAATCCAGGGAGAAAGTCAAAATAGAGGAAGATAAATAAC  400

seq1  AACATCAAAGAAGGTTTGAGGGGGCTGGGGAGATTCATCAGTAGATAAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATCAAAGAAGGTTTGAGGGGGCTGGGGAGATTCATCAGTAGATAAAG  450

seq1  CCTTTGCTATCCAAAACTATTTTACCTTTGTTCAGACCTACATCAAAACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTGCTATCCAAAACTATTTTACCTTTGTTCAGACCTACATCAAAACA  500

seq1  AATGTAGTAGAACAGCATGTAACCTTAGAGTACCTCTATTGGGCATTGGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTAGTAGAACAGCATGTAACCTTAGAGTACCTCTATTGGGCATTGGA  550

seq1  GGAAAGTCAGGAGAAGCCCCCGGCACAAGGCAGCAGTGGACAGCCAATAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAGTCAGGAGAAGCCCCCGGCACAAGGCAGCAGTGGACAGCCAATAG  600

seq1  AGAGACCATGCCTCAAGGAAGGAAGTAGATGAGTCTGGACACTCAAGGCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGACCATGCCTCAAGGAAGGAAGTAGATGAGTCTGGACACTCAAGGCT  650

seq1  GTCCTCTGACATCCACATGTGAGTCATGGCATGTGTGTGCCTCTAATCAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTCTGACATCCACATGTGAGTCATGGCATGTGTGTGCCTCTAATCAC  700

seq1  ACATTCTAAGGTACACATAGTCATACATGCACACAAAAAATCAATAAATG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTCTAAGGTACACATAGTCATACATGCACACAAAAAATCAATAAATG  750

seq1  TAAAAGGTTTGAAGCAACTTTTCAAGGTTGGATGCATATTT-GGTATGCT  799
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  TAAAAGGTTTGAAGCAACTTTTCAAGGTTGGATGCATATTTGGGTATGCT  800

seq1  AACAAGATCACTCTTTATTGTGAGAAATGAGCGATCATGGACATTAAATT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAGATCACTCTTTATTGTGAGAAATGAGCGATCATGGACATTAAATT  850

seq1  AATTGTCACCAGAGCTCAGTCATGCCTGTTTTTCTTCAAGACTAACTCTG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGTCACCAGAGCTCAGTCATGCCTGTTTTTCTTCAAGACTAACTCTG  900

seq1  CAATTCAAACAAGATCATCTGGGATGACAATCTGAATGCCAAAAGTATT-  948
      | |||||||||||||||||||||||||| |||||||||||||||||||| 
seq2  C-ATTCAAACAAGATCATCTGGGATGAC-ATCTGAATGCCAAAAGTATTG  948

seq1  GTTAGCACAACTCCATGAGAACATTTT--CTTTTCA-CTCCAC-TAT--A  992
      |||||||||||| ||||||||||||||   |||||| |||||| |||  |
seq2  GTTAGCACAACTTCATGAGAACATTTTTCTTTTTCACCTCCACTTATTAA  998

seq1  AGCCAGATGTCACAGCTATTTGGTACATTCAAACTCTAAAGTTAAGATAA  1042
       ||||||||||||||||||  ||||||||||||||   ||||  |||| |
seq2  GGCCAGATGTCACAGCTATCGGGTACATTCAAACTTCTAAGT--AGAT-A  1045

seq1  AGGAAAACA-GTATCAGTCGGGAAATCTGGG-ATCAG-AAAATGGGCACT  1089
      ||||||||| |||||||||||| |||||||| ||||| ||||||||||||
seq2  AGGAAAACAGGTATCAGTCGGG-AATCTGGGAATCAGAAAAATGGGCACT  1094

seq1  GTGTTTGTA  1098
      || ||||||
seq2  GTCTTTGTA  1103


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