BAC Information

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BAC

Clone NameB6Ng01-303I17
Chromosome11 (Build37)
Map Location 17,848,104 - 17,849,194
singlet/doubletsinglet
Overlap geneEtaa1
Upstream gene2810442I21Rik, A630050E13Rik, Plek, 1500041B16Rik, LOC100042644, Ppp3r1, Pno1, AI553587, C1d, LOC382486, EG665748
Downstream geneLOC327871, LOC627696, LOC627716, LOC665796, Meis1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-303I17.bB6Ng01-303I17.g
ACCGA097319GA097320
length1,2251,089
definitionB6Ng01-303I17.b B6Ng01-303I17.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctcaactgaagaatgccgaatggctgagaagcacctgaagaaatg
atcaacatccttgatcatcagagaaatgaaattcaaaacaacctggagat
tccacttcacaccagtcagagtgcctaagatcaaaagctcagataacagc
agaagctgccaaggattaggagaaagaggaacactcctccattgctggtg
agattgaaagctggcataaccactctggcagttccttagaaaattggaca
ttgtactactggaagacccagcaataccactcctgggcatattcccagaa
gatgctgcaacttgtaacaaggacatatgctctactatgttcatagcagc
cttatttataatagtcagaatctggaaagaacccagatgtccttcaacag
aggaatggatacagaaaatgtggtacatttacacaatggagtactactca
gctattaaaaaatgaatttatgaaatacacatttacttaaagccctctgg
ctgccaaagagagtggagatcatacactgtccagaccatcagaaaggaat
aacagtcgtggctagaggtaacagcttggctgatagagctgtcaaagagg
ttgccttagaggaaacagctgcctccatgttagctgcaatcctaccagga
ccatccaaccccaacctgccggaaaccccagtctatatggaagaagagat
caaatgggccaagaatcagcccatgagccagtgttcagaaggctggttgc
agacagctgagggtaagctaatattacctacctctccagaaatatttatc
ctcaggaaaatacacagagtcactcacactggagtaaaacagatggcaga
tgcagtgagataatctaaagtaactttcagaaacatgcaacatattatca
agaatatagtgtcaagctgcaaagcttgtcaattgatcatcacccacaac
actgaccaacatcctggctctgtctgggaggttagagactgggggcctat
tggaagttgattttacagaaatcaaacaggaaaagtacagctacaagtac
tacttggtgtcatggataacatcctcttggatggaacagaaggcatttca
acaaagactgaacctgttgaagaatggttaggcaaaaaagtggctagaaa
agaaatccctaaccagaatggatcctaaacatgaataggtcagaacactg
gttggacaccgggcatttgtgtgct
gaattccatgtttataaaaaccaaggtttgaagtacattacctatatcaa
atacattttgatgttacatacatataatatttggtagaaggaaaaataac
attttagttgtaagatgttcacaaaaccagaaacaaactacatacaacta
tcagacctgaaaataagaatatattcagaattttttctgcagtagtgatt
ctccaagttttcttatcctcataaagtcttaactaaaacttgggagctct
accttgacttagactgagagtctaagtaatgtcaaaacagattatagaga
ttttaccgcaaggtcaaagcaaaagctaagaatggacaactagaaaaaaa
gacaaaagcagaaaacttcaagtatgaaaaaaaaaatcaacttatttttg
ctgtatgtctttagttccttaatcacaaagttataaaatgagctttatat
tataaaccagttgttctcaacctgtgggtcatgactcctttggcagctct
ctatctccaaaaatgtttgcattatgattcgtaacagtagcaaaattagc
tatgaagtaagcaacaaaaataattttgtttgaggatcaccacaacatgt
ggaactgtattagagtcacagcattaggaagattgagaaccactgacata
aaccaaactagcaaaccaaattacttaatcaatcttatttgtttacagta
gctagaaagaatagaagtataaaacatgatacaaagttaaaactacgaga
ctatagggtattctaatttgggtctagagtgggagaaggcttcactgacg
tcctctgatctttacaaagtatgtgcctgcttgcacgtatccatggaaac
agcattttttttaaaaaagggtcattttacattgcttgaagatttgggtg
aaaagatatttagttttataaaatcataaaaccagttaattttcattgga
agactcaatattttctgagttgttgtataacactcttaagtaacatccct
taatgacttaattttgggatctgtccaaataaataaattcataataaagt
tcaggaagtcataacaatttacatagctttcagcatata
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_17848104_17849194
seq2: B6Ng01-303I17.g_69_1157

seq1  GAATTCCATGTTTATAAAAACCAAGGTTTGAAGTACATTACCTATATCAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATGTTTATAAAAACCAAGGTTTGAAGTACATTACCTATATCAA  50

seq1  ATACATTTTGATGTTACATACATATAATATTTGGTAGAAGGAAAAATAAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACATTTTGATGTTACATACATATAATATTTGGTAGAAGGAAAAATAAC  100

seq1  ATTTTAGTTGTAAGATGTTCACAAAACCAGAAACAAACTACATACAACTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTAGTTGTAAGATGTTCACAAAACCAGAAACAAACTACATACAACTA  150

seq1  TCAGACCTGAAAATAAGAATATATTCAGAATTTTTTCTGCAGTAGTGATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGACCTGAAAATAAGAATATATTCAGAATTTTTTCTGCAGTAGTGATT  200

seq1  CTCCAAGTTTTCTTATCCTCATAAAGTCTTAACTAAAACTTGGGAGCTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCAAGTTTTCTTATCCTCATAAAGTCTTAACTAAAACTTGGGAGCTCT  250

seq1  ACCTTGACTTAGACTGAGAGTCTAAGTAATGTCAAAACAGATTATAGAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTGACTTAGACTGAGAGTCTAAGTAATGTCAAAACAGATTATAGAGA  300

seq1  TTTTACCGCAAGGTCAAAGCAAAAGCTAAGAATGGACAACTAGAAAAAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTACCGCAAGGTCAAAGCAAAAGCTAAGAATGGACAACTAGAAAAAAA  350

seq1  GACAAAAGCAGAAAACTTCAAGTATGAAAAAAAAAATCAACTTATTTTTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAAAAGCAGAAAACTTCAAGTATGAAAAAAAAAATCAACTTATTTTTG  400

seq1  CTGTATGTCTTTAGTTCCTTAATCACAAAGTTATAAAATGAGCTTTATAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTATGTCTTTAGTTCCTTAATCACAAAGTTATAAAATGAGCTTTATAT  450

seq1  TATAAACCAGTTGTTCTCAACCTGTGGGTCATGACTCCTTTGGCAGCTCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAACCAGTTGTTCTCAACCTGTGGGTCATGACTCCTTTGGCAGCTCT  500

seq1  CTATCTCCAAAAATGTTTGCATTATGATTCGTAACAGTAGCAAAATTAGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATCTCCAAAAATGTTTGCATTATGATTCGTAACAGTAGCAAAATTAGC  550

seq1  TATGAAGTAAGCAACAAAAATAATTTTGTTTGAGGATCACCACAACATGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGAAGTAAGCAACAAAAATAATTTTGTTTGAGGATCACCACAACATGT  600

seq1  GGAACTGTATTAGAGTCACAGCATTAGGAAGATTGAGAACCACTGACATA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAACTGTATTAGAGTCACAGCATTAGGAAGATTGAGAACCACTGACATA  650

seq1  AACCAAACTAGCAAACCAAATTACTTAATCAATCTTATTTGTTTACAGTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCAAACTAGCAAACCAAATTACTTAATCAATCTTATTTGTTTACAGTA  700

seq1  GCTAGAAAGAATAGAAGTATAAAACATGATACAAAGTTAAAACTACGAGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAGAAAGAATAGAAGTATAAAACATGATACAAAGTTAAAACTACGAGA  750

seq1  CTATAGGGTATTCTAATTTGGGTCTAGAGTGGGAGAAGGCTTCACTGACG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATAGGGTATTCTAATTTGGGTCTAGAGTGGGAGAAGGCTTCACTGACG  800

seq1  TCCTCTGATCTTTACAAAGTATGTGCCTGCTTGCACGTATCCATGGAAAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCTGATCTTTACAAAGTATGTGCCTGCTTGCACGTATCCATGGAAAC  850

seq1  AGCA-TTTTTTTAAAAAAGGGTCATTTTACATTGCTTGAAGATTTGGGTG  899
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATTTTTTTTAAAAAAGGGTCATTTTACATTGCTTGAAGATTTGGGTG  900

seq1  AAAAGATATTTAGTTTTATAAAATCATAAAACCAGTTAA-TTTCATTGGA  948
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  AAAAGATATTTAGTTTTATAAAATCATAAAACCAGTTAATTTTCATTGGA  950

seq1  AGACTCAATATTTTCTGAGTTGTTTGTATAACACTCTTAAGTAACAT-CC  997
      |||||||||||||||||||||| |||||||||||||||||||||||| ||
seq2  AGACTCAATATTTTCTGAGTTG-TTGTATAACACTCTTAAGTAACATCCC  999

seq1  TTAATGACTTAATTTTGGAATCTGTCCAAATAAATTAAATTCAT-ATAAA  1046
      |||||||||||||||||| ||||||||||||||| ||||||||| |||||
seq2  TTAATGACTTAATTTTGGGATCTGTCCAAATAAA-TAAATTCATAATAAA  1048

seq1  GTTTCAGAAAGTCATAACAATTTTACATAGCCTCTCAAGCATATA  1091
      | ||||| |||||||||||| ||||||||| || || ||||||||
seq2  G-TTCAGGAAGTCATAACAA-TTTACATAG-CTTTC-AGCATATA  1089