BAC Information

Click to search

BAC

Clone NameB6Ng01-304G04
Chromosome11 (Build37)
Map Location 120,707,642 - 120,815,835
singlet/doubletdoublet
Overlap geneCcdc57, LOC100043454, Slc16a3
Upstream gene4932417H02Rik, Chmp6, Baiap2, Aatk, Azi1, 2410002I01Rik, 1810043H04Rik, 1810073N04Rik, 2810410L24Rik, LOC100042332, LOC100043384, LOC100043389, Bahcc1, Actg1, Fscn2, 2310003H01Rik, Nploc4, Tspan10, Pde6g, 1810049H13Rik, 3110023B02Rik, 2600005N12Rik, Hgs, Mrpl12, Slc25a10, LOC667716, Gcgr, BC003940, Dysfip1, P4hb, Arhgdia, LOC100042371, Thoc4, Anapc11, Npb, Pcyt2, Sirt7, Mafg, Pycr1, 1110012N22Rik, 5730593N15Rik, Aspscr1, Stra13, Lrrc45, Rac3, Dcxr, Cbr2, Hmga1-rs1, LOC667778, Rfng, Gps1, Dus1l, Fasn
Downstream geneCsnk1d, Cd7, Sectm1b, Sectm1a, LOC637008, 4921530G04Rik, Tex19, Uts2r, 1110031I02Rik, Hexdc, BC017643, Narf, Foxk2, Wdr45l, Rab40b, BC032265, Fn3k, Tbcd, Zfp750, B3gntl1, Metrnl, Ptchd3, LOC667879, LOC674842
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-304G04.bB6Ng01-304G04.g
ACCGA097956GA097957
length3351,042
definitionB6Ng01-304G04.b B6Ng01-304G04.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(120,707,642 - 120,707,976)(120,814,795 - 120,815,835)
sequence
tatggccctagaatatataccactaaaaagcaagacgatttcgttatttc
taaatatattttctttgctttagaagtgactgccacacgtgttcctgagt
ggcagtcaccatagcctcataactattaaaacaaacaaacaaacaaacaa
acaaacccaacagatctctgggcttctgtcctaagggccctcagcacagg
tggcaaacaggcagtcattgaccccaggacctccccagctttgcttgttt
ctttttctctaaagcaaagttttttgttgttttgtttttcaaagacaagt
ttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg
gaattctggtaaggtctaggattaagggagaacagccagccatggcagca
agcagctcacatcccaatctacgggaacaggggctgaccccaagcccaca
cccacccagctctaacttcccttttcatgaatttcagggccttattgatg
agagacaaagcaagtccgaaagctaggaccaagcttctgtttggctaatg
gcaccccagttagtgttctcctaatcccaggttagcctcatcccccgtct
caccaagaactgagctgcagcgagggcggcctcggacctgagtattcagt
ccagcctactcgtctctctccacaaatggtgtgctgccaaacagtactct
gggagagagaaagcaagccatgatgtatagaagggcagctcgcactggga
tggaaactcctgaccaggtgaccttcccaccgcagctgctcaccctggga
gggctgagcatggacctctgggctccagccctgcccctgcccctgcccct
ttgctggctctctccttgagcagtcctgtgattgggtcacagtgtgctaa
acaagactgtcctaggaagcccaatgtgactctgtccaggtattcctggg
gctcagaaacaacacacagctctactaggaatgcacaccagcctttgaag
gctgcaccccacatctgaccatctggccacggcccaacctgagccccacc
ccagagagtcaccaacaggacatgctcagtgggagccccaagtgagcccc
agacacctcttatccatgagccctaagtttgaaaggcccttaagattatt
taaaaggagccgggcggtggtggcacacgcctttaatcccagcacttggg
aggcagaggcaggcggatttctgagtttgaggccagcctggtctatacag
agggattttccaggatagccagggctacacagagaaaccctgtctcggaa
aaaataaaataaaaaaaaaagattattttaaaaggaatctttaaaacctg
gagtagttacattttaggaatatatatttattttagagatga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_120707642_120707976
seq2: B6Ng01-304G04.b_47_381

seq1  TATGGCCCTAGAATATATACCACTAAAAAGCAAGACGATTTCGTTATTTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGGCCCTAGAATATATACCACTAAAAAGCAAGACGATTTCGTTATTTC  50

seq1  TAAATATATTTTCTTTGCTTTAGAAGTGACTGCCACACGTGTTCCTGAGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATATATTTTCTTTGCTTTAGAAGTGACTGCCACACGTGTTCCTGAGT  100

seq1  GGCAGTCACCATAGCCTCATAACTATTAAAACAAACAAACAAACAAACAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGTCACCATAGCCTCATAACTATTAAAACAAACAAACAAACAAACAA  150

seq1  ACAAACCCAACAGATCTCTGGGCTTCTGTCCTAAGGGCCCTCAGCACAGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAACCCAACAGATCTCTGGGCTTCTGTCCTAAGGGCCCTCAGCACAGG  200

seq1  TGGCAAACAGGCAGTCATTGACCCCAGGACCTCCCCAGCTTTGCTTGTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCAAACAGGCAGTCATTGACCCCAGGACCTCCCCAGCTTTGCTTGTTT  250

seq1  CTTTTTCTCTAAAGCAAAGTTTTTTGTTGTTTTGTTTTTCAAAGACAAGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTTCTCTAAAGCAAAGTTTTTTGTTGTTTTGTTTTTCAAAGACAAGT  300

seq1  TTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG  335
      |||||||||||||||||||||||||||||||||||
seq2  TTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG  335

seq1: chr11_120814795_120815835
seq2: B6Ng01-304G04.g_67_1108 (reverse)

seq1  TCATCTCTAAA--TAATATATATTCCTAAAATGTAACTACTCCAGTTTTT  48
      |||||||||||   ||||||||||||||||||||||||||||||| ||||
seq2  TCATCTCTAAAATAAATATATATTCCTAAAATGTAACTACTCCAGGTTTT  50

seq1  AAAGATTCCCTTTTAAATAATCTTTTTTTTTTTTTTTTTTTTTTTTCCGA  98
      ||||||||| ||| ||||||||  |||||||||| |||| ||||||||||
seq2  AAAGATTCCTTTTAAAATAATC--TTTTTTTTTTATTTTATTTTTTCCGA  98

seq1  GACAGGGTTTCTCTGTGTAGCCCTGGCTATCCTGG-AAATCCCTCTGTAT  147
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  GACAGGGTTTCTCTGTGTAGCCCTGGCTATCCTGGAAAATCCCTCTGTAT  148

seq1  AGACCAGGCTGGCCTCAAACTCAGAAATCCGCCTGCCTCTGCCTCCCAAG  197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCAGGCTGGCCTCAAACTCAGAAATCCGCCTGCCTCTGCCTCCCAAG  198

seq1  TGCTGGGATTAAAGGCGTGTGCCACCACCGCCCGGCTCCTTTTAAATAAT  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGGGATTAAAGGCGTGTGCCACCACCGCCCGGCTCCTTTTAAATAAT  248

seq1  CTTAAGGGCCTTTCAAACTTAGGGCTCATGGATAAGAGGTGTCTGGGGCT  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAAGGGCCTTTCAAACTTAGGGCTCATGGATAAGAGGTGTCTGGGGCT  298

seq1  CACTTGGGGCTCCCACTGAGCATGTCCTGTTGGTGACTCTCTGGGGTGGG  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTGGGGCTCCCACTGAGCATGTCCTGTTGGTGACTCTCTGGGGTGGG  348

seq1  GCTCAGGTTGGGCCGTGGCCAGATGGTCAGATGTGGGGTGCAGCCTTCAA  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCAGGTTGGGCCGTGGCCAGATGGTCAGATGTGGGGTGCAGCCTTCAA  398

seq1  AGGCTGGTGTGCATTCCTAGTAGAGCTGTGTGTTGTTTCTGAGCCCCAGG  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTGGTGTGCATTCCTAGTAGAGCTGTGTGTTGTTTCTGAGCCCCAGG  448

seq1  AATACCTGGACAGAGTCACATTGGGCTTCCTAGGACAGTCTTGTTTAGCA  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACCTGGACAGAGTCACATTGGGCTTCCTAGGACAGTCTTGTTTAGCA  498

seq1  CACTGTGACCCAATCACAGGACTGCTCAAGGAGAGAGCCAGCAAAGGGGC  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGTGACCCAATCACAGGACTGCTCAAGGAGAGAGCCAGCAAAGGGGC  548

seq1  AGGGGCAGGGGCAGGGCTGGAGCCCAGAGGTCCATGCTCAGCCCTCCCAG  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGCAGGGGCAGGGCTGGAGCCCAGAGGTCCATGCTCAGCCCTCCCAG  598

seq1  GGTGAGCAGCTGCGGTGGGAAGGTCACCTGGTCAGGAGTTTCCATCCCAG  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGAGCAGCTGCGGTGGGAAGGTCACCTGGTCAGGAGTTTCCATCCCAG  648

seq1  TGCGAGCTGCCCTTCTATACATCATGGCTTGCTTTCTCTCTCCCAGAGTA  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCGAGCTGCCCTTCTATACATCATGGCTTGCTTTCTCTCTCCCAGAGTA  698

seq1  CTGTTTGGCAGCACACCATTTGTGGAGAGAGACGAGTAGGCTGGACTGAA  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTTGGCAGCACACCATTTGTGGAGAGAGACGAGTAGGCTGGACTGAA  748

seq1  TACTCAGGTCCGAGGCCGCCCTCGCTGCAGCTCAGTTCTTGGTGAGACGG  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTCAGGTCCGAGGCCGCCCTCGCTGCAGCTCAGTTCTTGGTGAGACGG  798

seq1  GGGATGAGGCTAACCTGGGATTAGGAGAACACTAACTGGGGTGCCATTAG  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGATGAGGCTAACCTGGGATTAGGAGAACACTAACTGGGGTGCCATTAG  848

seq1  CCAAACAGAAGCTTGGTCCTAGCTTTCGGACTTGCTTTGTCTCTCATCAA  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAACAGAAGCTTGGTCCTAGCTTTCGGACTTGCTTTGTCTCTCATCAA  898

seq1  TAAGGCCCTGAAATTCATGAAAAGGGAAGTTAGAGCTGGGTGGGTGTGGG  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGCCCTGAAATTCATGAAAAGGGAAGTTAGAGCTGGGTGGGTGTGGG  948

seq1  CTTGGGGTCAGCCCCTGTTCCCGTAGATTGGGATGTGAGCTGCTTGCTGC  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGGGTCAGCCCCTGTTCCCGTAGATTGGGATGTGAGCTGCTTGCTGC  998

seq1  CATGGCTGGCTGTTCTCCCTTAATCCTAGACCTTACCAGAATTC  1041
      ||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGCTGGCTGTTCTCCCTTAATCCTAGACCTTACCAGAATTC  1042