BAC Information

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BAC

Clone NameB6Ng01-305D07
Chromosome11 (Build37)
Map Location 58,588,908 - 58,673,858
singlet/doubletdoublet
Overlap geneOlfr315, Olfr314, 3100002J23Rik, Olfr313, Olfr312, GA_x5J8B7W3UM0-1747565-1747342, Olfr311
Upstream geneGalnt10, Sap30l, Hand1, LOC624605, Larp1, LOC676527, LOC667947, Cnot8, Gemin5, Mrpl22, Irgb10, Igtp, LOC263305, LOC100041816, EG668249, 4930438A08Rik, Zfp692, Zfp672, 1700047K16Rik, Sh3bp5l, 2210415F13Rik, LOC624814, 1810065E05Rik, OTTMUSG00000005737, 4930504O13Rik, Olfr30, Olfr333-ps1, Olfr332, Olfr331, Olfr330, Olfr329, Olfr328, Olfr327-ps1, Olfr325, Olfr324, 2210407C18Rik, Olfr323, Trim58, Olfr216, OTTMUSG00000005755, Olfr320, LOC668058, Olfr319, Olfr318, Olfr317, Olfr316
Downstream gene2810021J22Rik, Zfp39, Butr1, Rnf187, LOC676691, Hist3h2ba, Hist3h2bb, Hist3h2a, LOC382523, Trim17, Trim11, Obscn, A230051G13Rik, 4930543L23Rik, Gja12, Guk1, Mrpl55, 2310033P09Rik, Arf1, Wnt3a, Wnt9a, Gm249, 1110031B06Rik, Jmjd4, BC050078, LOC432565, Zkscan17, Nlrp3, Olfr222, LOC668157, Olfr223, GA_x5J8B7W3UM0-970645-971221, Olfr225, AA536749, 4933433K01Rik, Flcn, Cops3, Nt5m
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-305D07.bB6Ng01-305D07.g
ACCGA098555GA098556
length1,1201,084
definitionB6Ng01-305D07.b B6Ng01-305D07.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(58,588,908 - 58,590,035)(58,672,792 - 58,673,858)
sequence
gaattcaatttatcaattgtgtgaaaattgatcatttcatctagaccagg
catttaggagtctcattttattatatttctttttttactaaggcaataaa
taagaaaataattttattctgttttcagtagatagggcaggcagagtaca
gaaatggcaattcttctgacctccaaacttagcttgcattttattctttg
aaatcacattattatgggtataggagaaactttcataaatattaattata
gacactaaaagatcagcatgactatgttagctacagtcatgtgggattag
gctaaagccagaagaaacctatgaaacaaaatgacatcagaagtggccaa
agagacactgaaaaagattttattttattagaacaaagggaagttcaatt
gcaagttagttctgaagtagatacctttcatatttaaaatatttgagtat
gaaacatctattctcagatcactgtgatgtttttctgtggttgtgggaac
caaactcagggttttacacatggaaggcagacactccaccacagagctgc
actgctggccctggaaaaatacttttatttaaatttattttgtaatagtt
ctttctctcatatgtgtgtgtatgtctgtgcttgtgtctgtgtctatatg
tctgtgagtgtgtctgtgtgtgtgtgtctctctatgtgtgtctttgtgtg
tctgtgtctatatatgtatatgtctgtgtctatgtgtgtatgtgcatatg
tatgtgtgtgtctacatgtgtatgtgtccatgtctgtgtgtgtgtgtgtg
tgtctgtgtgtctgttcgtgtgtgtatctagaagggggcctcatgtgtgt
cacaatatgtttacaatgctatatcaatcagtaatatcaattttacagtg
atcatagattccattcatgcattaataactactagccttcccaggtactg
caccagtgaaacacaacccaacatctgagaaaacagtaacatgcaaggat
caacaaacacatatacatgttaaaatgatctaatacttacgatgtagcta
ttgctaaatgtatgaaacagattgaagatatacacaaatgacatactaca
ctagtcattttctctctctc
gaattcacagggttccttttagggtgtgaactgcctaatgactgaggaga
tatggcatgtggagaaaggcttttctacatacattatgcccaactgtata
tttttatattacagccaactgtatgtatttgaatgaacaagttggatctt
atggttgagacattttttacatttatatgttcttaaggtttctcatgttt
gtgagttctctgatctatctttggctgagatattttcttagtttttaatt
ataaaggtctgtcacctgtatgacttctcagatgagtgaacccgcttgac
agctgccaggccttcccacatacatagcactgacagtttctcaccactga
agccctagtgggcagaggattagtggtacagagttgctgtagaccaactc
ttcccactccgaggggtgagttctctgagggacacaggcatgaactagct
tcaaggctcatccacatacatttcactgatagtgtttctcaccggagtga
gttctctgatgcctagtgaggtggaatttcaaactaaatgacttcctaca
ttgcttacactcatagggtttctcactggtgtggattttcttatgtgtgt
agaggcttggactctgcttgtaacttttgccacacacgatacactcatag
ggcttctcacttgtgtgagttctcttgtgtgcatgaaggtgggaattttg
cttaaaggatttcccacagacgtcacactcatagggcttctcgcctgagt
gagttctctggtgcacagtgaggtaggactttgagaatgaacgacttcct
acattctttacactcgtagggcttctcgcctgtgtggattcttatgtgtg
tgttagagactcgtcctctgcttgaagctcttcccgcacgttatcacacg
caaagggtttcctccccccgtgtgaatccgcttgatggaccacaatgaaa
tgacttcattctaaaaagaactttcccgcactcttggcagtcatatggct
ttctcacttggtgtggttcctctgatgtgccgtgtaagtggcctcgcctt
ggtaaaaggcttttcccacacacaattacacaca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_58588908_58590035
seq2: B6Ng01-305D07.b_44_1163

seq1  GAATTCAATTTATCAATTGTGTGAAAATTGATCATTTCATCTAGACCAGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAATTTATCAATTGTGTGAAAATTGATCATTTCATCTAGACCAGG  50

seq1  CATTTAGGAGTCTCATTTTATTATATTTCTTTTTTTACTAAGGCAATAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTAGGAGTCTCATTTTATTATATTTCTTTTTTTACTAAGGCAATAAA  100

seq1  TAAGAAAATAATTTTATTCTGTTTTCAGTAGATAGGGCAGGCAGAGTACA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAAAATAATTTTATTCTGTTTTCAGTAGATAGGGCAGGCAGAGTACA  150

seq1  GAAATGGCAATTCTTCTGACCTCCAAACTTAGCTTGCATTTTATTCTTTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATGGCAATTCTTCTGACCTCCAAACTTAGCTTGCATTTTATTCTTTG  200

seq1  AAATCACATTATTATGGGTATAGGAGAAACTTTCATAAATATTAATTATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCACATTATTATGGGTATAGGAGAAACTTTCATAAATATTAATTATA  250

seq1  GACACTAAAAGATCAGCATGACTATGTTAGCTACAGTCATGTGGGATTAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACTAAAAGATCAGCATGACTATGTTAGCTACAGTCATGTGGGATTAG  300

seq1  GCTAAAGCCAGAAGAAACCTATGAAACAAAATGACATCAGAAGTGGCCAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAAAGCCAGAAGAAACCTATGAAACAAAATGACATCAGAAGTGGCCAA  350

seq1  AGAGACACTGAAAAAGATTTTATTTTATTAGAACAAAGGGAAGTTCAATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGACACTGAAAAAGATTTTATTTTATTAGAACAAAGGGAAGTTCAATT  400

seq1  GCAAGTTAGTTCTGAAGTAGATACCTTTCATATTTAAAATATTTGAGTAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGTTAGTTCTGAAGTAGATACCTTTCATATTTAAAATATTTGAGTAT  450

seq1  GAAACATCTATTCTCAGATCACTGTGATGTTTTTCTGTGGTTGTGGGAAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACATCTATTCTCAGATCACTGTGATGTTTTTCTGTGGTTGTGGGAAC  500

seq1  CAAACTCAGGGTTTTACACATGGAAGGCAGACACTCCACCACAGAGCTGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACTCAGGGTTTTACACATGGAAGGCAGACACTCCACCACAGAGCTGC  550

seq1  ACTGCTGGCCCTGGAAAAATACTTTTATTTAAATTTATTTTGTAATAGTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCTGGCCCTGGAAAAATACTTTTATTTAAATTTATTTTGTAATAGTT  600

seq1  CTTTCTCTCATATGTGTGTGTATGTCTGTGCTTGTGTCTGTGTCTATATG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTCTCATATGTGTGTGTATGTCTGTGCTTGTGTCTGTGTCTATATG  650

seq1  TCTGTGAGTGTGTCTGTGTGTGTGTGTCTCTCTATGTGTGTCTTTGTGTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTGAGTGTGTCTGTGTGTGTGTGTCTCTCTATGTGTGTCTTTGTGTG  700

seq1  TCTGTGTCTATATATGTATATGTCTGTGTCTATGTGTGTATGTGCATATG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTGTCTATATATGTATATGTCTGTGTCTATGTGTGTATGTGCATATG  750

seq1  TATGTGTGTGTCTACATGTGTATGTGTCCATGTCTGTGTGTGTGTGTGTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTGTGTGTCTACATGTGTATGTGTCCATGTCTGTGTGTGTGTGTGTG  800

seq1  TGTCTGTGTGTCTGTTCGTGTGTGTATCTAGAAGGGGGCCTCATGTGTGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTGTGTGTCTGTTCGTGTGTGTATCTAGAAGGGGGCCTCATGTGTGT  850

seq1  CACAATATGTTTACAATGCTATATCAATCAGTAATATCAATTTTACAGTG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAATATGTTTACAATGCTATATCAATCAGTAATATCAATTTTACAGTG  900

seq1  ATCATAGATTCCATTCATGCATTAATAACTACTAGCCTTCCCA-GTACTG  949
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  ATCATAGATTCCATTCATGCATTAATAACTACTAGCCTTCCCAGGTACTG  950

seq1  CACCAGTGAAACACAACCCAACATCTGAG-AAACAGTAACATGCAAGAAT  998
      ||||||||||||||||||||||||||||| ||||||||||||||||| ||
seq2  CACCAGTGAAACACAACCCAACATCTGAGAAAACAGTAACATGCAAGGAT  1000

seq1  C-ACAAACACATATAACATGTTTAAAATGATCTAATACTTTAACGATGTA  1047
      | |||||||||||| ||||| |||||||||||||||||||  ||||||| 
seq2  CAACAAACACATAT-ACATG-TTAAAATGATCTAATACTT--ACGATGT-  1045

seq1  AGCTATTGCTTAAAATGTATGAAACAGATTGAAGATATACACAAATGGAC  1097
      ||||||||||  |||||||||||||||||||||||||||||||||| |||
seq2  AGCTATTGCT--AAATGTATGAAACAGATTGAAGATATACACAAAT-GAC  1092

seq1  ATACTACACATAGTCAATTTTCTTCTCTCTC  1128
      ||||||||| ||||| |||||| ||||||||
seq2  ATACTACAC-TAGTC-ATTTTC-TCTCTCTC  1120

seq1: chr11_58672792_58673858
seq2: B6Ng01-305D07.g_70_1153 (reverse)

seq1  TGTGTGTAA-TGTGTGT-GGAAAAGCCTTTTAC--AAGCGAGCCCACCTA  46
      ||||||||| ||||||| |||||||||||||||  | ||||| |||| ||
seq2  TGTGTGTAATTGTGTGTGGGAAAAGCCTTTTACCAAGGCGAGGCCACTTA  50

seq1  CAC-GCACATCAGAGGACCCACA-CAGGTGAG-AAGCCATATGACTGCCA  93
      ||| ||||||||||||| ||||| || ||||| |||||||||||||||||
seq2  CACGGCACATCAGAGGAACCACACCAAGTGAGAAAGCCATATGACTGCCA  100

seq1  AGAGTGCGGG-AAGT--CTTTTAGACTGAAGTCATTTC-TTGTTGTCCAT  139
      |||||||||| ||||   ||||||| |||||||||||| |||| ||||||
seq2  AGAGTGCGGGAAAGTTCTTTTTAGAATGAAGTCATTTCATTGTGGTCCAT  150

seq1  C-AGCGGATTCACACGGGGG--AGAAACCCTTTGCGTGTGAT-ACGTGCG  185
      | ||||||||||||||||||   ||||||||||||||||||| |||||||
seq2  CAAGCGGATTCACACGGGGGGAGGAAACCCTTTGCGTGTGATAACGTGCG  200

seq1  GGAAGAGCTTCAAGCAGAGGACGAGTCTCT-ACACACACATAAGAATCCA  234
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  GGAAGAGCTTCAAGCAGAGGACGAGTCTCTAACACACACATAAGAATCCA  250

seq1  CACAGGCGAGAAGCCCTACGAGTGTAAAGAATGTAGGAAGTCGTTCATTC  284
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGGCGAGAAGCCCTACGAGTGTAAAGAATGTAGGAAGTCGTTCATTC  300

seq1  TC-AAGTCCTACCTCACTGTGCACCAGAGAACTCACTCAGGCGAGAAGCC  333
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAGTCCTACCTCACTGTGCACCAGAGAACTCACTCAGGCGAGAAGCC  350

seq1  CTATGAGTGTGACGTCTGTGGGAAATCCTTTAAGCAAAATTCCCACCTTC  383
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGAGTGTGACGTCTGTGGGAAATCCTTTAAGCAAAATTCCCACCTTC  400

seq1  ATGCACACAAGAGAACTCACACAAGTGAGAAGCCCTATGAGTGTATCGTG  433
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCACACAAGAGAACTCACACAAGTGAGAAGCCCTATGAGTGTATCGTG  450

seq1  TGTGGCAAAAGTTACAAGCAGAGTCCAAGCCTCTACACACATAAGAAAAT  483
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGCAAAAGTTACAAGCAGAGTCCAAGCCTCTACACACATAAGAAAAT  500

seq1  CCACACCAGTGAGAAACCCTATGAGTGTAAGCAATGTAGGAAGTCATTTA  533
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACACCAGTGAGAAACCCTATGAGTGTAAGCAATGTAGGAAGTCATTTA  550

seq1  GTTTGAAATTCCACCTCACTAGGCATCAGAGAACTCACTCCGGTGAGAAA  583
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGAAATTCCACCTCACTAGGCATCAGAGAACTCACTCCGGTGAGAAA  600

seq1  CACTATCAGTGAAATGTATGTGGATGAGCCTTGAAGCTAGTTCATGCCTG  633
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTATCAGTGAAATGTATGTGGATGAGCCTTGAAGCTAGTTCATGCCTG  650

seq1  TGTCCCTCAGAGAACTCACCCCTCGGAGTGGGAAGAGTTGGTCTACAGCA  683
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCCTCAGAGAACTCACCCCTCGGAGTGGGAAGAGTTGGTCTACAGCA  700

seq1  ACTCTGTACCACTAATCCTCTGCCCACTAGGGCTTCAGTGGTGAGAAACT  733
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTGTACCACTAATCCTCTGCCCACTAGGGCTTCAGTGGTGAGAAACT  750

seq1  GTCAGTGCTATGTATGTGGGAAGGCCTGGCAGCTGTCAAGCGGGTTCACT  783
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGTGCTATGTATGTGGGAAGGCCTGGCAGCTGTCAAGCGGGTTCACT  800

seq1  CATCTGAGAAGTCATACAGGTGACAGACCTTTATAATTAAAAACTAAGAA  833
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTGAGAAGTCATACAGGTGACAGACCTTTATAATTAAAAACTAAGAA  850

seq1  AATATCTCAGCCAAAGATAGATCAGAGAACTCACAAACATGAGAAACCTT  883
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATCTCAGCCAAAGATAGATCAGAGAACTCACAAACATGAGAAACCTT  900

seq1  AAGAACATATAAATGTAAAAAATGTCTCAACCATAAGATCCAACTTGTTC  933
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAACATATAAATGTAAAAAATGTCTCAACCATAAGATCCAACTTGTTC  950

seq1  ATTCAAATACATACAGTTGGCTGTAATATAAAAATATACAGTTGGGCATA  983
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCAAATACATACAGTTGGCTGTAATATAAAAATATACAGTTGGGCATA  1000

seq1  ATGTATGTAGAAAAGCCTTTCTCCACATGCCATATCTCCTCAGTCATTAG  1033
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTATGTAGAAAAGCCTTTCTCCACATGCCATATCTCCTCAGTCATTAG  1050

seq1  GCAGTTCACACCCTAAAAGGAACCCTGTGAATTC  1067
      ||||||||||||||||||||||||||||||||||
seq2  GCAGTTCACACCCTAAAAGGAACCCTGTGAATTC  1084