BAC Information

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BAC

Clone NameB6Ng01-305I17
Chromosome11 (Build37)
Map Location 69,201,264 - 69,284,880
singlet/doubletdoublet
Overlap geneCyb5d1, Lsmd1, Tmem88, Jmjd3, Dnahc2
Upstream genePik3r5, BB220380, BC024997, Ccdc42, Myh10, Ndel1, 9930039A11Rik, Rpl26, Odf4, Arhgef15, Slc25a35, 2400006H24Rik, Pfas, 1500010J02Rik, Aurkb, 2310047M10Rik, Tmem107, Vamp2, Per1, Hes7, Aloxe3, Alox12b, Alox8, Gucy2e, Cntrob, Trappc1, Kcnab3, A030009H04Rik, Chd3
Downstream geneEfnb3, Wdr79, LOC100043030, Trp53, Atp1b2, Shbg, Sat2, LOC382532, Fxr2, Sox15, Mpdu1, Cd68, Eif4a1, Senp3, Tnfsf12-tnfsf13, Tnfsf13, Tnfsf12, LOC100041994, Polr2a, Amac1, Zbtb4, Chrnb1, Fgf11, Tmem102, 4933402P03Rik, 1700095G12Rik, Nlgn2, 1810027O10Rik, Plscr3, Tnk1, LOC432576, Kctd11, Centb1, 2810408A11Rik, 0610025P10Rik, Gps2, Eif5a, Ybx2, Slc2a4, LOC668442, Cldn7, Rai12, Dullard, Gabarap, Phf23, Dvl2, Acadvl, Dlg4, Asgr1, Asgr2, Mgl2, Mgl1, Slc16a11, Slc16a13, Bcl6b, 0610010K14Rik, D11Bwg0434e, Alox12, Alox12e, Alox15, LOC668466, Pelp1, Arrb2, Med11, Cxcl16, Zmynd15
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-305I17.bB6Ng01-305I17.g
ACCGA098809GA098810
length1,076261
definitionB6Ng01-305I17.b B6Ng01-305I17.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(69,201,264 - 69,202,337)(69,284,620 - 69,284,880)
sequence
gaattccttgtctgcaaggatgtatgcgcaccactgtgtgctagtcccct
caggccagaagacagcatcaagtcccctggaactgcagttatggatgctt
gtgaactaccattcgggtcctgggaattgaaccctggtcttctgcaaggg
cagtaagtgctctgaactgctgagccagctcctcacactagtaatgttca
ttcctgacatgagcacttccttgttaaaatcctgggccaggcactgtacg
attattgggcacacagggatgatctgggtggacagctgagttcccactga
gcagtattctctgagggcactagatagcacagctctgggccaggaagaca
tgtggttggagcagtcccttgacagtcttttctgaccccatttatcagtg
ccccctcatttattcacacttgagctttgttttatagtgtttcctatgtg
cttacagtacccatgcccagtactttgcatatctgtttggtctctgagag
gaggaccattgggtcccttaggtttcaggctctgctttcttgcactcctc
atgcactctcgctgacctgtcataggatgctgttctagtaacaacacaac
tgtgtgctctccactagatcacctttgaatatggatgcagcaaccttatc
cagatgtcatgcctgggccttatatagtctccagcctaaatgagccagaa
acatttgagccttggctacaagacacaaccagatcaaaaaaactctagga
gagagttgggtgtagtggcgcacacctttaatcccagcactcgggaggca
gaggcaggaggatttctgagttcgaggccagcctggtctacaaagtgagt
ttcaggacagccagggctatacagagaaaccttgtctcgaaaaaccaaaa
aattaggaattcctgttgaaggaacacagcagatgtgatatgggttgaca
ccgatcatttaagatggtcccaggcagcctgccgagattggctcaccagt
gagagcactgactgctctttccgaaagttctgagttcaaattctcagcca
ccacatgtggggctacaaccatccat
agggctaaccttggctacataaggaatttgagggtagcctggtctagaat
acacacacacacacacacacacacacacacacacacacacacacgacaga
gagagagagagagagagagagagagagagagagagaatatgaatatgaat
ggatgatgtaaggaaaaccaaagctcgctgaacaacctgagagaagagct
ctggtaggaaggccattaggtgttactagtgggagggaggaggcaaggga
ggagaggggat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_69201264_69202337
seq2: B6Ng01-305I17.b_49_1124

seq1  GAATTCCTTGTCTGCAAGGATGTATGCGCACCACTGTGTGCTAGTCCCCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTTGTCTGCAAGGATGTATGCGCACCACTGTGTGCTAGTCCCCT  50

seq1  CAGGCCAGAAGACAGCATCAAGTCCCCTGGAACTGCAGTTATGGATGCTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCCAGAAGACAGCATCAAGTCCCCTGGAACTGCAGTTATGGATGCTT  100

seq1  GTGAACTACCATTCGGGTCCTGGGAATTGAACCCTGGTCTTCTGCAAGGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAACTACCATTCGGGTCCTGGGAATTGAACCCTGGTCTTCTGCAAGGG  150

seq1  CAGTAAGTGCTCTGAACTGCTGAGCCAGCTCCTCACACTAGTAATGTTCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTAAGTGCTCTGAACTGCTGAGCCAGCTCCTCACACTAGTAATGTTCA  200

seq1  TTCCTGACATGAGCACTTCCTTGTTAAAATCCTGGGCCAGGCACTGTACG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTGACATGAGCACTTCCTTGTTAAAATCCTGGGCCAGGCACTGTACG  250

seq1  ATTATTGGGCACACAGGGATGATCTGGGTGGACAGCTGAGTTCCCACTGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATTGGGCACACAGGGATGATCTGGGTGGACAGCTGAGTTCCCACTGA  300

seq1  GCAGTATTCTCTGAGGGCACTAGATAGCACAGCTCTGGGCCAGGAAGACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTATTCTCTGAGGGCACTAGATAGCACAGCTCTGGGCCAGGAAGACA  350

seq1  TGTGGTTGGAGCAGTCCCTTGACAGTCTTTTCTGACCCCATTTATCAGTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGTTGGAGCAGTCCCTTGACAGTCTTTTCTGACCCCATTTATCAGTG  400

seq1  CCCCCTCATTTATTCACACTTGAGCTTTGTTTTATAGTGTTTCCTATGTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCTCATTTATTCACACTTGAGCTTTGTTTTATAGTGTTTCCTATGTG  450

seq1  CTTACAGTACCCATGCCCAGTACTTTGCATATCTGTTTGGTCTCTGAGAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTACAGTACCCATGCCCAGTACTTTGCATATCTGTTTGGTCTCTGAGAG  500

seq1  GAGGACCATTGGGTCCCTTAGGTTTCAGGCTCTGCTTTCTTGCACTCCTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGACCATTGGGTCCCTTAGGTTTCAGGCTCTGCTTTCTTGCACTCCTC  550

seq1  ATGCACTCTCGCTGACCTGTCATAGGATGCTGTTCTAGTAACAACACAAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCACTCTCGCTGACCTGTCATAGGATGCTGTTCTAGTAACAACACAAC  600

seq1  TGTGTGCTCTCCACTAGATCACCTTTGAATATGGATGCAGCAACCTTATC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGCTCTCCACTAGATCACCTTTGAATATGGATGCAGCAACCTTATC  650

seq1  CAGATGTCATGCCTGGGCCTTATATAGTCTCCAGCCTAAATGAGCCAGAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATGTCATGCCTGGGCCTTATATAGTCTCCAGCCTAAATGAGCCAGAA  700

seq1  ACATTTGAGCCTTGGCTACAAGACACAACCAGATCAAAAAAACTCTAGGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTTGAGCCTTGGCTACAAGACACAACCAGATCAAAAAAACTCTAGGA  750

seq1  GAGAGTTGGGTGTAGTGGCGCACACCTTTAATCCCAGCACTCGGGAGGCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGTTGGGTGTAGTGGCGCACACCTTTAATCCCAGCACTCGGGAGGCA  800

seq1  GAGGCAGGAGGATTTCTGAGTTCGAGGCCAGCCTGGTCTACAAAGTGAGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCAGGAGGATTTCTGAGTTCGAGGCCAGCCTGGTCTACAAAGTGAGT  850

seq1  TCCAGGACAGCCAGGGCTATACAGAGAAACCCTGTCTCGAAAAACCAAAA  900
      | ||||||||||||||||||||||||||||| |||||||||||||| |||
seq2  TTCAGGACAGCCAGGGCTATACAGAGAAACCTTGTCTCGAAAAACC-AAA  899

seq1  AAATTAGGAATTCCTGTTGAAGGAACACAGCAGATGTGATATGGGTTGAC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTAGGAATTCCTGTTGAAGGAACACAGCAGATGTGATATGGGTTGAC  949

seq1  ACCGATCA-TTAAGATGGTCCCAGGCAGGCTGGCGAGA-TGGCTCAGCAG  998
      |||||||| ||||||||||||||||||| ||| ||||| ||||||| |||
seq2  ACCGATCATTTAAGATGGTCCCAGGCAGCCTGCCGAGATTGGCTCACCAG  999

seq1  TTGAGAGCACTGACTGCTC-TTCCGAAAGTTCTGAGTTCAAA-TCCCAGC  1046
       |||||||||||||||||| |||||||||||||||||||||| || ||||
seq2  -TGAGAGCACTGACTGCTCTTTCCGAAAGTTCTGAGTTCAAATTCTCAGC  1048

seq1  CACCACATG-GTGGCTCACAACCATCCAT  1074
      ||||||||| | |||| ||||||||||||
seq2  CACCACATGTGGGGCT-ACAACCATCCAT  1076

seq1: chr11_69284620_69284880
seq2: B6Ng01-305I17.g_73_333 (reverse)

seq1  ATCCCCTCTCCTCCCTTGCCTCCTCCCTCCCACTAGTAACACCTAATGGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCCTCTCCTCCCTTGCCTCCTCCCTCCCACTAGTAACACCTAATGGC  50

seq1  CTTCCTACCAGAGCTCTTCTCTCAGGTTGTTCAGCGAGCTTTGGTTTTCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCTACCAGAGCTCTTCTCTCAGGTTGTTCAGCGAGCTTTGGTTTTCC  100

seq1  TTACATCATCCATTCATATTCATATTCTCTCTCTCTCTCTCTCTCTCTCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACATCATCCATTCATATTCATATTCTCTCTCTCTCTCTCTCTCTCTCT  150

seq1  CTCTCTCTCTCTCTGTCGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTCTCTCTCTGTCGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG  200

seq1  TGTGTGTGTGTATTCTAGACCAGGCTACCCTCAAATTCCTTATGTAGCCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTGTGTATTCTAGACCAGGCTACCCTCAAATTCCTTATGTAGCCA  250

seq1  AGGTTAGCCCT  261
      |||||||||||
seq2  AGGTTAGCCCT  261