BAC Information

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BAC

Clone NameB6Ng01-305K07
Chromosome11 (Build37)
Map Location 24,336,766 - 24,457,557
singlet/doubletdoublet
Overlap genenone
Upstream geneAhsa2, 1700093K21Rik, A730027B03Rik, 0610010F05Rik, Pex13, 4933435A13Rik, Rel, Papolg, A830031A19Rik, LOC100042256, Bcl11a
Downstream geneLOC100042282
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-305K07.bB6Ng01-305K07.g
ACCGA098884GA098885
length1,1581,120
definitionB6Ng01-305K07.b B6Ng01-305K07.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(24,456,394 - 24,457,557)(24,336,766 - 24,337,906)
sequence
gaattcaataaatgccaagaaagtcaacaaacaataaaacaagtgaagga
aactgttcaagacctgaaaatggaaatagaagcaataaagaaaatgaaaa
ctggatatcctggcaagcctagcagccatgaggttggccttatcttctga
tgctccatcttctggttcacacctctacctgcaatcccagatctgcactc
cattacccaggacacagctcagcctgcctctaggctgcctactacaccca
agacaaccagctctgcatacttccctggaggcccactgccacccaatcag
aggcctgctgtcacccaagacaattaaaggcctgctgccattagagacta
ctagctatacctgcagtcccagagtcaagctaccaggcaggcaaatacca
gagacaaccatacggttaaaggcaagcatgagaacagaattaagaaaagc
cagggcaatagggaactatcagaacccagctctcctactacagcaagccc
tgcatatcctaagataccttaagagaaagacaatgaccttaaatagaatc
ttatggagattatagagacatttaaatgggaaataaatacattctctaga
gaaaaacaggaaaatacaaccaaatgaataaatagaaagaaatacaggaa
aatacaaagaggggaagaaaataaataaaactattcaatacctcaaaatg
gaaatagaatcaataaagaaaacacagaggcaatactagagatagaaaac
ctaggaaagagaacaggaattacaaacaaaaacatcaccaacagaataca
agaaatggaagagagaatctcaggaatagaagatatcataaaagaaatag
aaacattgatcaaacaaaatgtcaaatctaaaaagtttctaagacaacac
ttccaggaaacttgggacactatgaaaataccaaacctatgaataatagg
aatagaagagaattctcagattaaaggctaaacatattcttcaacaaaat
catagaagaaaatttccctatagtgaatgactactgtgccagaagatata
agacttcttaaaattcaatagaatacaagtgttacagcatgcccaactac
caggcccatgaaaggctatgcaagaaaaaagttcttgtgctcctaaagaa
attgaaga

gaattctgttcatctcaactctgggacaagagaatggctagcacctgtca
ccaggttggacaataccggagttgcagccagatgtggtggcacaccttta
atctcagcaatggtgagacagaggcagccagatctctgagtctgaggcca
gcctgatttacagagtgagttccaggacagccagaggccatgtcttaaac
aaaaacaaaaccaagtgtgcaactgtttttagcgctgttcagtgctggct
ccctctgcctacctcctaacacagtgtatatgtacagctcagaagaccac
ttacatgattgtgttctacccctctaccaattgagtcctatggatgtatc
ttaggccatcctcaagcttggcaacaattctgcccatagcatttcttctc
aatatcttgtctgactttagaagctgtgcaaggatataacccagcgtctg
tactatctcctgatctcccagggtagcacacacagactgcactctcattc
ctttgactgttgcaaagtctctagtccctgagcatttgcccctaggcacc
catctctgattccctctacactttccttgcccatcctcccttccaggcag
cagtctttaaaacatggcctgagagttgttcttttctagagctcatgttt
ccaacatggtagggtctgtaattttgattctggcaggaattaataatctc
cttgttatgttcctaattagtttttcatcaaaatcactgttagaatctac
tcattattctgttgagccttcccccctcaggtgacaagccagaggtattc
caaggagcttttagtctattaagggctccatggacctatcttctccccca
ttcaattaagaatctccctttaaactctcccagtaggatctaggtgtttt
gctacagtcccccaaatagctcaagggtttcgccaaaccctcaatgccct
ttgcattgggttctaggctttggacgacacactcagttactgtgctgata
gatggcaatactatttctagatccccttacctacccacatacagatttcc
catgattagtgattttaaaaatcaacatcaacaaccacattgccttggct
agagatctgactcactgctc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_24456394_24457557
seq2: B6Ng01-305K07.b_47_1204 (reverse)

seq1  TCTTCAATTTCTTTATGAAGGCACAGGAACTTTTCTCTTGGCATAG-CTT  49
      ||||||||||||||| ||  ||||| |||||||| |||| |||||| |||
seq2  TCTTCAATTTCTTTAGGA--GCACAAGAACTTTTTTCTT-GCATAGCCTT  47

seq1  TCATTGGGCCTGGTAAGGTTGGGCATGCTGT-ACACTTGTA-TCTATTGA  97
      ||| |||||||||||  |||||||||||||| ||||||||| ||||||||
seq2  TCA-TGGGCCTGGTA--GTTGGGCATGCTGTAACACTTGTATTCTATTGA  94

seq1  ATTTTAGGAAGTCTTTAATATTCTTCTTGGCACAGTAGTCATTCACTATA  147
      |||||| ||||||||  ||| ||||| |||||||||||||||||||||||
seq2  ATTTTAAGAAGTCTT--ATA-TCTTC-TGGCACAGTAGTCATTCACTATA  140

seq1  GGGAAATTTTCTTCTATGATTTTGTTGAAG-ATATGTTTAGCCTTTAATC  196
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  GGGAAATTTTCTTCTATGATTTTGTTGAAGAATATGTTTAGCCTTTAATC  190

seq1  TGAGAATTCTCTTCTATTCCTATTATTCATAGGTTTGGTATTTTCATAGT  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAATTCTCTTCTATTCCTATTATTCATAGGTTTGGTATTTTCATAGT  240

seq1  GTCCCAAGTTTCCTGGAAGTGTTGTCTTAGAAACTTTTTAGATTTGACAT  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCCAAGTTTCCTGGAAGTGTTGTCTTAGAAACTTTTTAGATTTGACAT  290

seq1  TTTGTTTGATCAATGTTTCTATTTCTTTTATGATATCTTCTATTCCTGAG  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTTGATCAATGTTTCTATTTCTTTTATGATATCTTCTATTCCTGAG  340

seq1  ATTCTCTCTTCCATTTCTTGTATTCTGTTGGTGATGTTTTTGTTTGTAAT  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTCTCTTCCATTTCTTGTATTCTGTTGGTGATGTTTTTGTTTGTAAT  390

seq1  TCCTGTTCTCTTTCCTAGGTTTTCTATCTCTAGTATTGCCTCTGTGTTTT  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGTTCTCTTTCCTAGGTTTTCTATCTCTAGTATTGCCTCTGTGTTTT  440

seq1  CTTTATTGATTCTATTTCCATTTTGAGGTATTGAATAGTTTTATTTATTT  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTATTGATTCTATTTCCATTTTGAGGTATTGAATAGTTTTATTTATTT  490

seq1  TCTTCCCCTCTTTGTATTTTCCTGTATTTCTTTCTATTTATTCATTTGGT  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCCCCTCTTTGTATTTTCCTGTATTTCTTTCTATTTATTCATTTGGT  540

seq1  TGTATTTTCCTGTTTTTCTCTAGAGAATGTATTTATTTCCCATTTAAATG  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATTTTCCTGTTTTTCTCTAGAGAATGTATTTATTTCCCATTTAAATG  590

seq1  TCTCTATAATCTCCATAAGATTCTATTTAAGGTCATTGTCTTTCTCTTAA  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTATAATCTCCATAAGATTCTATTTAAGGTCATTGTCTTTCTCTTAA  640

seq1  GGTATCTTAGGATATGCAGGGCTTGCTGTAGTAGGAGAGCTGGGTTCTGA  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTATCTTAGGATATGCAGGGCTTGCTGTAGTAGGAGAGCTGGGTTCTGA  690

seq1  TAGTTCCCTATTGCCCTGGCTTTTCTTAATTCTGTTCTCATGCTTGCCTT  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTCCCTATTGCCCTGGCTTTTCTTAATTCTGTTCTCATGCTTGCCTT  740

seq1  TAACCGTATGGTTGTCTCTGGTATTTGCCTGCCTGGTAGCTTGACTCTGG  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACCGTATGGTTGTCTCTGGTATTTGCCTGCCTGGTAGCTTGACTCTGG  790

seq1  GACTGCAGGTATAGCTAGTAGTCTCTAATGGCAGCAGGCCTTTAATTGTC  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGCAGGTATAGCTAGTAGTCTCTAATGGCAGCAGGCCTTTAATTGTC  840

seq1  TTGGGTGACAGCAGGCCTCTGATTGGGTGGCAGTGGGCCTCCAGGGAAGT  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGTGACAGCAGGCCTCTGATTGGGTGGCAGTGGGCCTCCAGGGAAGT  890

seq1  ATGCAGAGCTGGTTGTCTTGGGTGTAGTAGGCAGCCTAGAGGCAGGCTGA  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCAGAGCTGGTTGTCTTGGGTGTAGTAGGCAGCCTAGAGGCAGGCTGA  940

seq1  GCTGTGTCCTGGGTAATGGAGTGCAGATCTGGGATTGCAGGTAGAGGTGT  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTGTCCTGGGTAATGGAGTGCAGATCTGGGATTGCAGGTAGAGGTGT  990

seq1  GAACCAGAAGATGGAGCATCAGAAGATAAGGCCAACCTCATGGCTGCTAG  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACCAGAAGATGGAGCATCAGAAGATAAGGCCAACCTCATGGCTGCTAG  1040

seq1  GCTTGCCAGGATATCCAGTTTTCATTTTCTTTATTGCTTCTATTTCCATT  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGCCAGGATATCCAGTTTTCATTTTCTTTATTGCTTCTATTTCCATT  1090

seq1  TTCAGGTCTTGAACAGTTTCCTTCACTTGTTTTATTGTTTGTTGACTTTC  1146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGGTCTTGAACAGTTTCCTTCACTTGTTTTATTGTTTGTTGACTTTC  1140

seq1  TTGGCATTTATTGAATTC  1164
      ||||||||||||||||||
seq2  TTGGCATTTATTGAATTC  1158


seq1: chr11_24336766_24337906
seq2: B6Ng01-305K07.g_70_1189

seq1  GAATTCTGTTCATCTCAACTCTGGGACAAGAGAATGGCTAGCACCTGTCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGTTCATCTCAACTCTGGGACAAGAGAATGGCTAGCACCTGTCA  50

seq1  CCAGGTTGGACAATACCGGAGTTGCAGCCAGATGTGGTGGCACACCTTTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGTTGGACAATACCGGAGTTGCAGCCAGATGTGGTGGCACACCTTTA  100

seq1  ATCTCAGCAATGGTGAGACAGAGGCAGCCAGATCTCTGAGTCTGAGGCCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCAGCAATGGTGAGACAGAGGCAGCCAGATCTCTGAGTCTGAGGCCA  150

seq1  GCCTGATTTACAGAGTGAGTTCCAGGACAGCCAGAGGCCATGTCTTAAAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGATTTACAGAGTGAGTTCCAGGACAGCCAGAGGCCATGTCTTAAAC  200

seq1  AAAAACAAAACCAAGTGTGCAACTGTTTTTAGCGCTGTTCAGTGCTGGCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAACAAAACCAAGTGTGCAACTGTTTTTAGCGCTGTTCAGTGCTGGCT  250

seq1  CCCTCTGCCTACCTCCTAACACAGTGTATATGTACAGCTCAGAAGACCAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCTGCCTACCTCCTAACACAGTGTATATGTACAGCTCAGAAGACCAC  300

seq1  TTACATGATTGTGTTCTACCCCTCTACCAATTGAGTCCTATGGATGTATC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACATGATTGTGTTCTACCCCTCTACCAATTGAGTCCTATGGATGTATC  350

seq1  TTAGGCCATCCTCAAGCTTGGCAACAATTCTGCCCATAGCATTTCTTCTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGGCCATCCTCAAGCTTGGCAACAATTCTGCCCATAGCATTTCTTCTC  400

seq1  AATATCTTGTCTGACTTTAGAAGCTGTGCAAGGATATAACCCAGCGTCTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATCTTGTCTGACTTTAGAAGCTGTGCAAGGATATAACCCAGCGTCTG  450

seq1  TACTATCTCCTGATCTCCCAGGGTAGCACACACAGACTGCACTCTCATTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTATCTCCTGATCTCCCAGGGTAGCACACACAGACTGCACTCTCATTC  500

seq1  CTTTGACTGTTGCAAAGTCTCTAGTCCCTGAGCATTTGCCCCTAGGCACC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGACTGTTGCAAAGTCTCTAGTCCCTGAGCATTTGCCCCTAGGCACC  550

seq1  CATCTCTGATTCCCTCTACACTTTCCTTGCCCATCCTCCCTTCCAGGCAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTCTGATTCCCTCTACACTTTCCTTGCCCATCCTCCCTTCCAGGCAG  600

seq1  CAGTCTTTAAAACATGGCCTGAGAGTTGTTCTTTTCTAGAGCTCATGTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCTTTAAAACATGGCCTGAGAGTTGTTCTTTTCTAGAGCTCATGTTT  650

seq1  CCAACATGGTAGGGTCTGTAATTTTGATTCTGGCAGGAATTAATAATCTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAACATGGTAGGGTCTGTAATTTTGATTCTGGCAGGAATTAATAATCTC  700

seq1  CTTGTTATGTTCCTAATTAGTTTTTCATCAAAATCACTGTTAGAATCTAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTTATGTTCCTAATTAGTTTTTCATCAAAATCACTGTTAGAATCTAC  750

seq1  TCATTATTCTGTTGAGCCTTCCCCCCTCAGGTGACAAGCCAGAGGTATTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTATTCTGTTGAGCCTTCCCCCCTCAGGTGACAAGCCAGAGGTATTC  800

seq1  CAAGGAGCTTTTAGTCTATTAAGGGCTCCATGGACCTATCTTCTCCCCCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGAGCTTTTAGTCTATTAAGGGCTCCATGGACCTATCTTCTCCCCCA  850

seq1  TTCAATTAAGAATCTCCCTTTAAACTCTCCCAGTAGGATCTAGGTGTTTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAATTAAGAATCTCCCTTTAAACTCTCCCAGTAGGATCTAGGTGTTTT  900

seq1  GCTACAGTCCCCCAAATAGCTCAA-GGTTTCGCCAAAACCCTCAATGCCC  949
      |||||||||||||||||||||||| ||||||||| |||||||||||||||
seq2  GCTACAGTCCCCCAAATAGCTCAAGGGTTTCGCC-AAACCCTCAATGCCC  949

seq1  TTTGCATTGGGTTCTAGGCTTTGGACGACAACACTCAGTTACTGTGCTGA  999
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  TTTGCATTGGGTTCTAGGCTTTGGACGAC-ACACTCAGTTACTGTGCTGA  998

seq1  TAGATGGCAAAACTATTTCTAGAATTCCCCCTTACCTACCCACATACAGG  1049
      |||||||||| ||||||||||||    ||||||||||||||||||||| |
seq2  TAGATGGCAATACTATTTCTAGA---TCCCCTTACCTACCCACATACA-G  1044

seq1  ATTTCCCAATGATTAGTGATTTTAAAAAAATTAAAAAAACAAAACAAAAC  1099
      ||||||| |||||||||||||||          ||||| ||| |  ||  
seq2  ATTTCCC-ATGATTAGTGATTTT----------AAAAATCAACATCAACA  1083

seq1  AAAACATTTGGCTTTGCCTAAGAGAATTCTGACTCACTGCTC  1141
      |  |||||  || ||| || |||||  |||||||||||||||
seq2  ACCACATT--GCCTTGGCT-AGAGA--TCTGACTCACTGCTC  1120


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