BAC Information

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BAC

Clone NameB6Ng01-308B18
Chromosome11 (Build37)
Map Location 121,582,371 - 121,583,511
singlet/doubletsinglet
Overlap genenone
Upstream geneLrrc45, Rac3, Dcxr, Cbr2, Hmga1-rs1, LOC667778, Rfng, Gps1, Dus1l, Fasn, Ccdc57, LOC100043454, Slc16a3, Csnk1d, Cd7, Sectm1b, Sectm1a, LOC637008, 4921530G04Rik, Tex19, Uts2r, 1110031I02Rik, Hexdc, BC017643, Narf, Foxk2, Wdr45l, Rab40b, BC032265, Fn3k, Tbcd, Zfp750, B3gntl1, Metrnl
Downstream genePtchd3, LOC667879, LOC674842
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-308B18.bB6Ng01-308B18.g
ACCGA100697GA100698
length7151,144
definitionB6Ng01-308B18.b B6Ng01-308B18.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcagtagagagataggaatattgaagagtgctcaaatgaagatgca
ctgaaaactcagtcattcaatcagaaaacccagagggaagccgtacaggt
agagtgggtcatgtggaagatagagtgttgagacttgaagataaagtaga
ggaattagacacacaggcaacaatatgaaaaacatttttattttttactt
ttggggtgtgtgttgttgagacagggttattctgtataatcctggccgtc
ccgaaacttgctctgtagtccaggctggcttcaaactcagcgatctacct
acctctgcctcccgagctctaggattaaaggtgtgtgctgccactgcctg
gagcgaaaggaaaaaaccaaaccaaaacaaaacttttaaaacactaaagt
agcatgttggaaatgtggaacatcatgaaaagaccaaatcttcaagttct
agacatacaaggagaagaatcccaggttagcgtcatagaccacagatctt
aaggttcatagaagaaaatttccccatgttagtgaaagaaataaccctca
aagatgcacacagaataccaagtagatgacagaaaagaaacttctcatgg
aatattatagctaatacactagttatacaaaacaaacagaggataaagaa
agctgcaggagaaaaaccataagttaaatataaagcgaaaaccccattta
taataatatagtctc
gaattctgaaattgagattccaaagccccgaccatggtgaccttaccacc
caatgcctacccttagctgtttttataaatcattgccttcccgggtggca
gtgcacaaaggcctactgttgatgctggattcctcacgttctccagcatc
cttcactctgctcccacacagaaggacagagccacccctaccctgacccc
ttgcttccagcagccttgtgttccctggaaagcccaacctcagaatcacc
tcctctcatggaccatccctccaaagcactgtggtcctcagagccagatc
ttccctaagcccacatcctcaccacagggccacagtctttgaggactaca
tcctccccacagatttgcatccccaaatccctgctgtggttacttgacaa
cctcccattatcacttgtctggctcacctataaagcctcaattgtgctgc
cagctggcagctcctcagaagggatgggacctatgcattcactgtgtacc
aggtccatacctcaccgtggaaacaaaggatctgcattcctctcaggact
aaaaacctctttgggagacctctgttccagatgctatggtggaaaggctg
gaaggagggctcttgggcttttcccagaaaagtgaaaactacttgggaca
aaaagactggaaaaggccaataatggctgcctggtcctttattgaaaagg
tcccagagatatgtcaagtctctctctggaaagctcccagactgtcttta
tattctcatcctacaaacacagaatggcagtccaacagacccgtgtatcc
gtatctgaagtaagccatactccacccatgataatgataggcttattgtg
gtctgaggtggacaaggaggtgggcacacccaggctggatctagatacca
ctaactcctactaataacactctaggagatgctgtccccaaatttactct
gggagaaagacatgcacaggctgtctgggatcagtttcccacccacaact
tcagtggcagcctggattgtagctatagcaactatgagatttcccaactc
taccttgtgggacagagcatctctagtccttaaacaaggttctttctaga
gaatgtgattcaggacttgtgcagcctgactatcaggccttgct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_121582371_121583511
seq2: B6Ng01-308B18.g_68_1211 (reverse)

seq1  AGCAAGGCCTGATGGGTCAGGCTGCCACAGCTCCTGAACCACATTCTCTA  50
      |||||||||||||  ||||||||| ||||  ||||||| |||||||||||
seq2  AGCAAGGCCTGAT-AGTCAGGCTG-CACAAGTCCTGAATCACATTCTCTA  48

seq1  GAAGGA--CCTGTTTAGGGCTTAGAGATGCTCTGGTCCCAC-AGGTAGAG  97
      ||| ||  | |||||| ||  |||||||||||| ||||||| ||||||||
seq2  GAAAGAACCTTGTTTAAGGACTAGAGATGCTCT-GTCCCACAAGGTAGAG  97

seq1  GTGGGAAATCCTCATTAGTGCTATAGCTACAATCCAGGCTGCCACTG-AG  146
       |||||||| |||||   ||||||||||||||||||||||||||||| ||
seq2  TTGGGAAAT-CTCATAGTTGCTATAGCTACAATCCAGGCTGCCACTGAAG  146

seq1  TTGT-GGTGGG-AACTGATCCCAGACAGCCTGTGCATGTCTTTCT-CCAG  193
      |||| |||||| ||||||||||||||||||||||||||||||||| ||||
seq2  TTGTGGGTGGGAAACTGATCCCAGACAGCCTGTGCATGTCTTTCTCCCAG  196

seq1  AGTAAATTTGGGGACAGCATCTCCTAGAGTGTTATTAGTAGGAGTTAGTG  243
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAAATTTGGGGACAGCATCTCCTAGAGTGTTATTAGTAGGAGTTAGTG  246

seq1  GTATCTAGATCCAGCCTGGGTGTGCCCACCTCCTTGTCCACCTCAGACCA  293
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATCTAGATCCAGCCTGGGTGTGCCCACCTCCTTGTCCACCTCAGACCA  296

seq1  CAATAAGCCTATCATTATCATGGGTGGAGTATGGCTTACTTCAGATACGG  343
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATAAGCCTATCATTATCATGGGTGGAGTATGGCTTACTTCAGATACGG  346

seq1  ATACACGGGTCTGTTGGACTGCCATTCTGTGTTTGTAGGATGAGAATATA  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACACGGGTCTGTTGGACTGCCATTCTGTGTTTGTAGGATGAGAATATA  396

seq1  AAGACAGTCTGGGAGCTTTCCAGAGAGAGACTTGACATATCTCTGGGACC  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACAGTCTGGGAGCTTTCCAGAGAGAGACTTGACATATCTCTGGGACC  446

seq1  TTTTCAATAAAGGACCAGGCAGCCATTATTGGCCTTTTCCAGTCTTTTTG  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCAATAAAGGACCAGGCAGCCATTATTGGCCTTTTCCAGTCTTTTTG  496

seq1  TCCCAAGTAGTTTTCACTTTTCTGGGAAAAGCCCAAGAGCCCTCCTTCCA  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAAGTAGTTTTCACTTTTCTGGGAAAAGCCCAAGAGCCCTCCTTCCA  546

seq1  GCCTTTCCACCATAGCATCTGGAACAGAGGTCTCCCAAAGAGGTTTTTAG  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTTCCACCATAGCATCTGGAACAGAGGTCTCCCAAAGAGGTTTTTAG  596

seq1  TCCTGAGAGGAATGCAGATCCTTTGTTTCCACGGTGAGGTATGGACCTGG  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGAGAGGAATGCAGATCCTTTGTTTCCACGGTGAGGTATGGACCTGG  646

seq1  TACACAGTGAATGCATAGGTCCCATCCCTTCTGAGGAGCTGCCAGCTGGC  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACAGTGAATGCATAGGTCCCATCCCTTCTGAGGAGCTGCCAGCTGGC  696

seq1  AGCACAATTGAGGCTTTATAGGTGAGCCAGACAAGTGATAATGGGAGGTT  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACAATTGAGGCTTTATAGGTGAGCCAGACAAGTGATAATGGGAGGTT  746

seq1  GTCAAGTAACCACAGCAGGGATTTGGGGATGCAAATCTGTGGGGAGGATG  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAAGTAACCACAGCAGGGATTTGGGGATGCAAATCTGTGGGGAGGATG  796

seq1  TAGTCCTCAAAGACTGTGGCCCTGTGGTGAGGATGTGGGCTTAGGGAAGA  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTCCTCAAAGACTGTGGCCCTGTGGTGAGGATGTGGGCTTAGGGAAGA  846

seq1  TCTGGCTCTGAGGACCACAGTGCTTTGGAGGGATGGTCCATGAGAGGAGG  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGCTCTGAGGACCACAGTGCTTTGGAGGGATGGTCCATGAGAGGAGG  896

seq1  TGATTCTGAGGTTGGGCTTTCCAGGGAACACAAGGCTGCTGGAAGCAAGG  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTCTGAGGTTGGGCTTTCCAGGGAACACAAGGCTGCTGGAAGCAAGG  946

seq1  GGTCAGGGTAGGGGTGGCTCTGTCCTTCTGTGTGGGAGCAGAGTGAAGGA  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCAGGGTAGGGGTGGCTCTGTCCTTCTGTGTGGGAGCAGAGTGAAGGA  996

seq1  TGCTGGAGAACGTGAGGAATCCAGCATCAACAGTAGGCCTTTGTGCACTG  1043
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGGAGAACGTGAGGAATCCAGCATCAACAGTAGGCCTTTGTGCACTG  1046

seq1  CCACCCGGGAAGGCAATGATTTATAAAAACAGCTAAGGGTAGGCATTGGG  1093
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCCGGGAAGGCAATGATTTATAAAAACAGCTAAGGGTAGGCATTGGG  1096

seq1  TGGTAAGGTCACCATGGTCGGGGCTTTGGAATCTCAATTTCAGAATTC  1141
      ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTAAGGTCACCATGGTCGGGGCTTTGGAATCTCAATTTCAGAATTC  1144