BAC Information

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BAC

Clone NameB6Ng01-312A01
Chromosome11 (Build37)
Map Location 70,827,377 - 70,828,547
singlet/doubletsinglet
Overlap geneDerl2
Upstream geneAcadvl, Dlg4, Asgr1, Asgr2, Mgl2, Mgl1, Slc16a11, Slc16a13, Bcl6b, 0610010K14Rik, D11Bwg0434e, Alox12, Alox12e, Alox15, LOC668466, Pelp1, Arrb2, Med11, Cxcl16, Zmynd15, Tm4sf5, Vmo1, C730027E14Rik, Psmb6, Pld2, Mink1, Chrne, LOC668433, Gp1ba, Slc25a11, Rnf167, Pfn1, Eno3, Spag7, Camta2, AI842396, Kif1c, LOC668488, Zfp3, A430084P05Rik, Rabep1, LOC668461, Nup88, Rpain, C1qbp, Dhx33
Downstream geneMis12, 6330403K07Rik, LOC382536, Nlrp1a, Nlrp1b, Nlrp1c, LOC100043249, 9230020A06Rik, Wscd1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-312A01.bB6Ng01-312A01.g
ACCGA103581GA103582
length1,0301,167
definitionB6Ng01-312A01.b B6Ng01-312A01.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctcacctgaggaataccgaatggcagagaagcacctgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccacctcacaccagtcagaatgtctaagatcaaaaattcaggtgacagc
agatgctggcgaggaagtggagaaagaggaacactcctccattgttggtg
ggattgcaggcttgtacaaccactctggaaatttgtctggcggttcctca
gaaaattggacatagtactaccggagtatccagcaatacctctcctgggc
atatatccagaagatgccccaactggtaagaaggacacatgctccactat
gttcatagcagccttatttataatagccagaagctggaaagaacccagat
gcccctcaacagaggaatggatacagaaaatgtggtacatctacacagtg
gagtactactcagatattaaaaagaatgaatttatgaaattcctagccaa
atggatggacctggagggcatcatcctgagtgaggtaacacattcacaaa
ggaactcacacaatatgtactcactgataagtggatattagcccaaaacc
taggatacccaagatataagatacaatttcctaaacacatgaaactcaag
aaaaatgaatactgaagtgtggacactatacccctccttagaagtgggaa
caaaacacccttggaaggagttacagagacaaagtttggagctgagatga
aaggatggaccatgtagagactgccttatccagggatccaccccataatc
agcatccaaacgctgacaccattgcatacactagcaagattttatcgaaa
ggacccagatgtagctgtctcttgtgagactatgccggggcctagcaaac
acagaagtggatgcccacagtcagctaatggatggatcacaggctcccaa
tggaggagctagagaaagtacccaaggagctaaagggatctgcacctata
ggtggatcacattatgaactaccagtaccc
gaattcacccattttatgtatatgagtgcactgtctttatgcgcaccaga
agaggacatcagatcacagatggttgtgagccaccatgtggttgctggga
attgaactcaggacttccggaagagcagtcagtgctcttaaccgctgagc
catttctccagccctagaattctgtttcgtgatgctcttgccttttgggg
aaacattaattcctttgacagtacgtacagtgaggctccttcaccaccac
cacctttacaggtgctgaagcatgcaggctggaagaaagccttcttggca
ctcggcactacacctaagtgacacacagaacgaattctcttctttttaaa
aacatttgtatcagtcttgacagtgacttaataaacgtcttcttaccaac
ctagtttaaaaacgaagtcaactgtgaacttactgagatgcttcaagata
atccacctgggttgaaacttctcgcccagtggagcttcctgtccaacctc
tgggctgtcatgggggctgtgaaataaatggtagctcccgaggctacaat
ctggaggtctatgtttgtgtttgttcaaaatatctagtgaatcatgggag
acagatgaaaagcttgaagaacagatgacagtctgttcttcaatattttc
ctgtatgctatttgttgaaggatacagtcattaaaaatccaccaaaaagg
aacataaatacaaagtctgctgtccgacctcggaaagagccttcttctag
cattcgacaataacggtatcttaagtttcaagttaaggaaatattaggaa
tacacatataaagaagataaaatgtaatgaaccactgaaacatacttggg
ctttatacaatttgtaaataatcaagctgcttttctctaagaatgtttga
agagtagtctggtttctgtttttttccatcaagcattttaggcaatgtca
gaactagcactatattttccaaagcctgtctcactgggatgctaactcac
tcaagtactgcatgaacacgttccagtcactctcacatctcttcgattcg
tggtgctctttcccacactcagaatacatgtaattgcaaccatacttggg
tttgcttaatgggaagaactccctgcaagaagccttgtgttgcaaccacc
ttcagggccaggcaggc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_70827377_70828547
seq2: B6Ng01-312A01.g_62_1228

seq1  GAATTCACCCATTTTATGTATATGAGTGCACTGTCTTTATGCGCACCAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACCCATTTTATGTATATGAGTGCACTGTCTTTATGCGCACCAGA  50

seq1  AGAGGACATCAGATCACAGATGGTTGTGAGCCACCATGTGGTTGCTGGGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGACATCAGATCACAGATGGTTGTGAGCCACCATGTGGTTGCTGGGA  100

seq1  ATTGAACTCAGGACTTCCGGAAGAGCAGTCAGTGCTCTTAACCGCTGAGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGAACTCAGGACTTCCGGAAGAGCAGTCAGTGCTCTTAACCGCTGAGC  150

seq1  CATTTCTCCAGCCCTAGAATTCTGTTTCGTGATGCTCTTGCCTTTTGGGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTCTCCAGCCCTAGAATTCTGTTTCGTGATGCTCTTGCCTTTTGGGG  200

seq1  AAACATTAATTCCTTTGACAGTACGTACAGTGAGGCTCCTTCACCACCAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACATTAATTCCTTTGACAGTACGTACAGTGAGGCTCCTTCACCACCAC  250

seq1  CACCTTTACAGGTGCTGAAGCATGCAGGCTGGAAGAAAGCCTTCTTGGCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTTTACAGGTGCTGAAGCATGCAGGCTGGAAGAAAGCCTTCTTGGCA  300

seq1  CTCGGCACTACACCTAAGTGACACACAGAACGAATTCTCTTCTTTTTAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCGGCACTACACCTAAGTGACACACAGAACGAATTCTCTTCTTTTTAAA  350

seq1  AACATTTGTATCAGTCTTGACAGTGACTTAATAAACGTCTTCTTACCAAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATTTGTATCAGTCTTGACAGTGACTTAATAAACGTCTTCTTACCAAC  400

seq1  CTAGTTTAAAAACGAAGTCAACTGTGAACTTACTGAGATGCTTCAAGATA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGTTTAAAAACGAAGTCAACTGTGAACTTACTGAGATGCTTCAAGATA  450

seq1  ATCCACCTGGGTTGAAACTTCTCGCCCAGTGGAGCTTCCTGTCCAACCTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCACCTGGGTTGAAACTTCTCGCCCAGTGGAGCTTCCTGTCCAACCTC  500

seq1  TGGGCTGTCATGGGGGCTGTGAAATAAATGGTAGCTCCCGAGGCTACAAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCTGTCATGGGGGCTGTGAAATAAATGGTAGCTCCCGAGGCTACAAT  550

seq1  CTGGAGGTCTATGTTTGTGTTTGTTCAAAATATCTAGTGAATCATGGGAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAGGTCTATGTTTGTGTTTGTTCAAAATATCTAGTGAATCATGGGAG  600

seq1  ACAGATGAAAAGCTTGAAGAACAGATGACAGTCTGTTCTTCAATATTTTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGATGAAAAGCTTGAAGAACAGATGACAGTCTGTTCTTCAATATTTTC  650

seq1  CTGTATGCTATTTGTTGAAGGATACAGTCATTAAAAATCCACCAAAAAGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTATGCTATTTGTTGAAGGATACAGTCATTAAAAATCCACCAAAAAGG  700

seq1  AACATAAATACAAAGTCTGCTGTCCGACCTCGGAAAGAGCCTTCTTCTAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATAAATACAAAGTCTGCTGTCCGACCTCGGAAAGAGCCTTCTTCTAG  750

seq1  CATTCGACAATAACGGTATCTTAAGTTTCAAGTTAAGGAAATATTAGGAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCGACAATAACGGTATCTTAAGTTTCAAGTTAAGGAAATATTAGGAA  800

seq1  TACACATATAAAGAAGATAAAATGTAATGAACCACTGAAACATACTTGGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACATATAAAGAAGATAAAATGTAATGAACCACTGAAACATACTTGGG  850

seq1  CTTTATACAATTTGTAAATAATCAAGCTGCTTTTCTCTAAGAATGTTTGA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTATACAATTTGTAAATAATCAAGCTGCTTTTCTCTAAGAATGTTTGA  900

seq1  AGAGTAGTCTGGTTTCTGTTTTTTTTCCATCAAGCATTTTAGGCAATGTC  950
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  AGAGTAGTCTGGTTTCTG-TTTTTTTCCATCAAGCATTTTAGGCAATGTC  949

seq1  AGAACTAGCACTATATTTTCCAAAGCCTGTCTCACTGGGATGCTAACTCA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACTAGCACTATATTTTCCAAAGCCTGTCTCACTGGGATGCTAACTCA  999

seq1  CTCAAGTACTGCATGAACACCGTTCCAGTCACTCTCACATCTCTTCCGAT  1050
      ||||||||||||||||||| ||||||||||||||||||||||||| ||||
seq2  CTCAAGTACTGCATGAACA-CGTTCCAGTCACTCTCACATCTCTT-CGAT  1047

seq1  TCGTGGTGCTCTTTCCCACACTCAG-ATACATGTTAATTTGCACCATACT  1099
      ||||||||||||||||||||||||| ||||||| |||||   ||||||||
seq2  TCGTGGTGCTCTTTCCCACACTCAGAATACATG-TAATTGCAACCATACT  1096

seq1  T-GGTTTGCTAATTGGGAAGAACTCCCTGCAAAGAAGCCTTGTGTGAAAA  1148
      | |||||||| | ||||||||||||||||| ||||||||||||||   ||
seq2  TGGGTTTGCTTAATGGGAAGAACTCCCTGC-AAGAAGCCTTGTGTTGCAA  1145

seq1  CCACCTTTCCAGGCCAGGCAGGC  1171
      ||||| |||  ||||||||||||
seq2  CCACC-TTCAGGGCCAGGCAGGC  1167