BAC Information

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BAC

Clone NameB6Ng01-313M18
Chromosome11 (Build37)
Map Location 6,251,602 - 6,374,178
singlet/doubletdoublet
Overlap geneOgdh, Zmiz2, Ppia, H2afv, LOC665277, LOC665283, LOC626342
Upstream geneZnrf3, LOC100042016, LOC382478, Xbp1, Ccdc117, LOC100041183, Ankrd36, LOC665181, Mrps24, 2010005J08Rik, 2210015D19Rik, Dbnl, Pgam2, Polm, Aebp1, Pold2, Myl7, Gck, Ykt6, Camk2b, LOC100042156, Nudcd3, LOC100042173, Npc1l1, LOC100041242, LOC665250, Ddx56, Tmed4, LOC100042227
Downstream genePurb, Myo1g, LOC100041286, Ccm2, LOC665327, AB182283, Tbrg4, Wap, LOC100041311, Ramp3, LOC665314, LOC626419, LOC665339, LOC665343, LOC100041332, Adcy1, LOC100041347, Igfbp1, Igfbp3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-313M18.bB6Ng01-313M18.g
ACCGA104908GA104909
length1,1321,061
definitionB6Ng01-313M18.b B6Ng01-313M18.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(6,373,032 - 6,374,178)(6,251,602 - 6,252,675)
sequence
gaattcagagatcaaagcttgaactagaatccattactaaaatagtttaa
aagttggcaattttttttttcaaaaacaaaagcatttttacaatggggat
tgctgaggtgggcacaagaagtcaggcataaagcacaaagtggactgttt
gagtggattggttgctgctcattaaagttcttcccttgatctcttaagta
tggaggtctttaccaagaaatggcttagcatgagtgggagctgaatccca
gtggctccaccgtatgaaccagagaattatggctaattcggctgttacag
ccactggctggctgcattttaaaccttaaaacttgactatctgcaaaaaa
ggaacagtgtggctacaagcctgagctttaatgaaatagacatcctcaca
gagaagttggaaataacagaactgaagtcttaatttaccttcagtttaat
ctgtggatttattgaaatactgacgatcctcaggtccagaattccagcat
catttattcttttaaaataaatttttaagaacttgatccatcttattcag
tacctcacaatcaaagttggcaaatgatggatgaatgattcaagcgttgc
acccggtagaagctgaatccatttgtgaatggactgaagtgaacgcgaat
gctgactctatcctggaagcatttttataccatcttgaaatttcaacaaa
ctggcacttgccggtttatccagctgtctttcaagaataaaagttggggt
tttcaaggatcgcctcttctatattttaaatggattttcagtataaatga
tttttctaatcaagttaatcccaccccatcaaaaggtattcctagaaatg
tcatagacctaggcaactttgaattgaatgggagctaatgttctttccaa
agtttttcagtatctgtgtgacaccttctcaagaaccaggaggcaagtaa
cccccactccactatcttagtattttttttaactgcatgcctgcctttat
tgagctgccttttaattatgcatatccttttatatcttatttgtatatca
tctatacaatctttttgtatttattcgaaattagtaaattatacaagagg
tcaatttttggtctgtgcctgaagggaaggaa
gaattccaggagccccagaaagtcttgagctgggtgttgaagcatgaata
gatgttatgttgtgcaagtgagcaaaatgatcagaaagagggtacctggg
ataaggatacagggagagccctgctgccctggaatactgcaaggggggca
tgcaaagctaactgcaggtctactgtgcccctggtagcctgcaggtctac
aagtcagaactgcctggtgataggcctgtctcagctatagaccagccaaa
ggtgtgttatctctgagaccacctgagaacagcttagttcacctagggga
ggccacagaccaggacgatggccctggagagtaaacaccagaggaggtga
agagcagagaaattagtgtcttcttcctgcattgtgtgtgtgtgcctccc
actgagatctggaagacagggtgtcctggctgtgtaccaaaggtcactgt
ttagatgtcctttatttcggaccatcattctaaaatctgtaagatatagt
ctactgtgagcatattttgtctttcagttaatcgtcttcactcccaaatc
cctcctgcgccaccctgaggcaagaactagctttgacgagatgctgccag
gtaggtgtggggcgtggattgttagtgctgggagttcctcactgtctgta
ggccttatggggcttgtacttaccagtctccttaggctctttctagattt
ttagtcatgatataaagatctcagactgtaagttcctctagaattgcatt
aaaatagcagggcttggtggcgcatgcctttagtcccagccctctggagg
cagaggcaaacccatctctgagttcagggccagccttctttacagagcaa
gtttcaagccagccagaattacatggtgagaccttgtctcaaaaaacaaa
aagaaaaggaaaagacacacagtgatctagggtctcaatagcgcatgcaa
cagctccaccacaactcagagtacactcttagcaaattcttgtaagagaa
aagctctgggaggaggagcgcagctacactgctgagatagagctgtgcat
gagatttctac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_6373032_6374178
seq2: B6Ng01-313M18.b_49_1180 (reverse)

seq1  TTCCCTCCCTCTCAGCCACAGACACAAAAAATGACCTTTTTGTATA--TT  48
      |||| ||||| |||| ||||||| |||||| ||||| | |||||||  ||
seq2  TTCCTTCCCT-TCAGGCACAGAC-CAAAAATTGACC-TCTTGTATAATTT  47

seq1  ACTTATTTCCGAATAAATACAAAAAGATTGTATAGATTGAATAATACCAA  98
      ||| |||| ||||||||||||||||||||||||||| |||   ||||  |
seq2  ACTAATTT-CGAATAAATACAAAAAGATTGTATAGA-TGA--TATAC--A  91

seq1  AATAAGATAATAAAAAGGATATGCAATAAATTAAAAAGGCAGCTCAAATA  148
      |||||||||   |||||||||||| ||||  | |||||||||||| ||||
seq2  AATAAGATA--TAAAAGGATATGC-ATAA--TTAAAAGGCAGCTC-AATA  135

seq1  AAGGGCAGGCATGCAGTTAAAAAAAATACTAAGATAGTGGAGGTGGGGTT  198
      || |||||||||||||||||||||||||||||||||||||||  ||||||
seq2  AA-GGCAGGCATGCAGTTAAAAAAAATACTAAGATAGTGGAGTGGGGGTT  184

seq1  ACTTGCCTCCTGGTTCTTGAGAAGGTGTCACACAGATACCTGAAAAACTT  248
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  ACTTGCCTCCTGGTTCTTGAGAAGGTGTCACACAGATA-CTGAAAAACTT  233

seq1  TGGAAAGAACATTAGCTCCCATTCAATTCAAAGTTGCCTAGGTCTATGAC  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAAGAACATTAGCTCCCATTCAATTCAAAGTTGCCTAGGTCTATGAC  283

seq1  ATTTCTAGGAATACCTTTTGATGGGGTGGGATTAACTTGATTAGAAAAAT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCTAGGAATACCTTTTGATGGGGTGGGATTAACTTGATTAGAAAAAT  333

seq1  CATTTATACTGAAAATCCATTTAAAATATAGAAGAGGCGATCCTTGAAAA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTATACTGAAAATCCATTTAAAATATAGAAGAGGCGATCCTTGAAAA  383

seq1  CCCCAACTTTTATTCTTGAAAGACAGCTGGATAAACCGGCAAGTGCCAGT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCAACTTTTATTCTTGAAAGACAGCTGGATAAACCGGCAAGTGCCAGT  433

seq1  TTGTTGAAATTTCAAGATGGTATAAAAATGCTTCCAGGATAGAGTCAGCA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTGAAATTTCAAGATGGTATAAAAATGCTTCCAGGATAGAGTCAGCA  483

seq1  TTCGCGTTCACTTCAGTCCATTCACAAATGGATTCAGCTTCTACCGGGTG  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCGCGTTCACTTCAGTCCATTCACAAATGGATTCAGCTTCTACCGGGTG  533

seq1  CAACGCTTGAATCATTCATCCATCATTTGCCAACTTTGATTGTGAGGTAC  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACGCTTGAATCATTCATCCATCATTTGCCAACTTTGATTGTGAGGTAC  583

seq1  TGAATAAGATGGATCAAGTTCTTAAAAATTTATTTTAAAAGAATAAATGA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATAAGATGGATCAAGTTCTTAAAAATTTATTTTAAAAGAATAAATGA  633

seq1  TGCTGGAATTCTGGACCTGAGGATCGTCAGTATTTCAATAAATCCACAGA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGGAATTCTGGACCTGAGGATCGTCAGTATTTCAATAAATCCACAGA  683

seq1  TTAAACTGAAGGTAAATTAAGACTTCAGTTCTGTTATTTCCAACTTCTCT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAACTGAAGGTAAATTAAGACTTCAGTTCTGTTATTTCCAACTTCTCT  733

seq1  GTGAGGATGTCTATTTCATTAAAGCTCAGGCTTGTAGCCACACTGTTCCT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGGATGTCTATTTCATTAAAGCTCAGGCTTGTAGCCACACTGTTCCT  783

seq1  TTTTTGCAGATAGTCAAGTTTTAAGGTTTAAAATGCAGCCAGCCAGTGGC  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTGCAGATAGTCAAGTTTTAAGGTTTAAAATGCAGCCAGCCAGTGGC  833

seq1  TGTAACAGCCGAATTAGCCATAATTCTCTGGTTCATACGGTGGAGCCACT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAACAGCCGAATTAGCCATAATTCTCTGGTTCATACGGTGGAGCCACT  883

seq1  GGGATTCAGCTCCCACTCATGCTAAGCCATTTCTTGGTAAAGACCTCCAT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGATTCAGCTCCCACTCATGCTAAGCCATTTCTTGGTAAAGACCTCCAT  933

seq1  ACTTAAGAGATCAAGGGAAGAACTTTAATGAGCAGCAACCAATCCACTCA  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTAAGAGATCAAGGGAAGAACTTTAATGAGCAGCAACCAATCCACTCA  983

seq1  AACAGTCCACTTTGTGCTTTATGCCTGACTTCTTGTGCCCACCTCAGCAA  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGTCCACTTTGTGCTTTATGCCTGACTTCTTGTGCCCACCTCAGCAA  1033

seq1  TCCCCATTGTAAAAATGCTTTTGTTTTTGAAAAAAAAAATTGCCAACTTT  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCATTGTAAAAATGCTTTTGTTTTTGAAAAAAAAAATTGCCAACTTT  1083

seq1  TAAACTATTTTAGTAATGGATTCTAGTTCAAGCTTTGATCTCTGAATTC  1147
      |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACTATTTTAGTAATGGATTCTAGTTCAAGCTTTGATCTCTGAATTC  1132

seq1: chr11_6251602_6252675
seq2: B6Ng01-313M18.g_67_1127

seq1  GAATTCCAGGAGCCCCAGAAAGTCTTGAGCTGGGTGTTGAAGCATGAATA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGGAGCCCCAGAAAGTCTTGAGCTGGGTGTTGAAGCATGAATA  50

seq1  GATGTTATGTTGTGCAAGTGAGCAAAATGATCAGAAAGAGGGTACCTGGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTTATGTTGTGCAAGTGAGCAAAATGATCAGAAAGAGGGTACCTGGG  100

seq1  ATAAGGATACAGGGAGAGCCCTGCTGCCCTGGAATACTGCAAGGGGGGCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGGATACAGGGAGAGCCCTGCTGCCCTGGAATACTGCAAGGGGGGCA  150

seq1  TGCAAAGCTAACTGCAGGTCTACTGTGCCCCTGGTAGCCTGCAGGTCTAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAAAGCTAACTGCAGGTCTACTGTGCCCCTGGTAGCCTGCAGGTCTAC  200

seq1  AAGTCAGAACTGCCTGGTGATAGGCCTGTCTCAGCTATAGACCAGCCAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCAGAACTGCCTGGTGATAGGCCTGTCTCAGCTATAGACCAGCCAAA  250

seq1  GGTGTGTTATCTCTGAGACCACCTGAGAACAGCTTAGTTCACCTAGGGGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGTGTTATCTCTGAGACCACCTGAGAACAGCTTAGTTCACCTAGGGGA  300

seq1  GGCCACAGACCAGGACGATGGCCCTGGAGAGTAAACACCAGAGGAGGTGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCACAGACCAGGACGATGGCCCTGGAGAGTAAACACCAGAGGAGGTGA  350

seq1  AGAGCAGAGAAATTAGTGTCTTCTTCCTGCATTGTGTGTGTGTGCCTCCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCAGAGAAATTAGTGTCTTCTTCCTGCATTGTGTGTGTGTGCCTCCC  400

seq1  ACTGAGATCTGGAAGACAGGGTGTCCTGGCTGTGTACCAAAGGTCACTGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAGATCTGGAAGACAGGGTGTCCTGGCTGTGTACCAAAGGTCACTGT  450

seq1  TTAGATGTCCTTTATTTCGGACCATCATTCTAAAATCTGTAAGATATAGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGATGTCCTTTATTTCGGACCATCATTCTAAAATCTGTAAGATATAGT  500

seq1  CTACTGTGAGCATATTTTGTCTTTCAGTTAATCGTCTTCACTCCCAAATC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTGTGAGCATATTTTGTCTTTCAGTTAATCGTCTTCACTCCCAAATC  550

seq1  CCTCCTGCGCCACCCTGAGGCAAGAACTAGCTTTGACGAGATGCTGCCAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCTGCGCCACCCTGAGGCAAGAACTAGCTTTGACGAGATGCTGCCAG  600

seq1  GTAGGTGTGGGGCGTGGATTGTTAGTGCTGGGAGTTCCTCACTGTCTGTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGGTGTGGGGCGTGGATTGTTAGTGCTGGGAGTTCCTCACTGTCTGTA  650

seq1  GGCCTTATGGGGCTTGTACTTACCAGTCTCCTTAGGCTCTTTCTAGATTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTTATGGGGCTTGTACTTACCAGTCTCCTTAGGCTCTTTCTAGATTT  700

seq1  TTAGTCATGATATAAAGATCTCAGACTGTAAGTTCCTCTAGAATTGCATT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTCATGATATAAAGATCTCAGACTGTAAGTTCCTCTAGAATTGCATT  750

seq1  AAAATAGCAGGGCTTGGTGGCGCATGCCTTTAGTCCCAGCCCTCTGGAGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATAGCAGGGCTTGGTGGCGCATGCCTTTAGTCCCAGCCCTCTGGAGG  800

seq1  CAGAGGCAAACCCATCTCTGAGTTCAGGGCCAGCCTTCTTTACAGAGCAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGGCAAACCCATCTCTGAGTTCAGGGCCAGCCTTCTTTACAGAGCAA  850

seq1  GTTTCAAGCCAGCCAGAATTACATGGTGAGACCTTGTCTCAAAAAACAAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCAAGCCAGCCAGAATTACATGGTGAGACCTTGTCTCAAAAAACAAA  900

seq1  A--GAAAGGAAAAGACAACACAGTGAATCTAGGGTCTCAAATAGGCGCAT  948
      |   |||||||||||| |||||||| |||||||||||| |||| ||||||
seq2  AAGAAAAGGAAAAGAC-ACACAGTG-ATCTAGGGTCTC-AATA-GCGCAT  946

seq1  GCAACAGCT-CACCACAACTCAGGAGTACAACTCTTAGCAAATTCTTTGT  997
      ||||||||| |||||||||||| |||||| ||||||||||||||| ||||
seq2  GCAACAGCTCCACCACAACTCA-GAGTAC-ACTCTTAGCAAATTC-TTGT  993

seq1  AAAGAGGAAAAGCTCTGGGGAGGGAGGGAGCGCCAGCTACACTGCTGAGA  1047
       |||| |||||||||| ||||||   |||||| |||||||||||||||||
seq2  -AAGA-GAAAAGCTCT-GGGAGG--AGGAGCG-CAGCTACACTGCTGAGA  1037

seq1  TAAGAGGCTGTGGCATGAGATTTCTAC  1074
      | ||| ||||| |||||||||||||||
seq2  T-AGA-GCTGT-GCATGAGATTTCTAC  1061