BAC Information

Click to search

BAC

Clone NameB6Ng01-313P08
Chromosome11 (Build37)
Map Location 41,776,716 - 41,946,139
singlet/doubletdoublet
Overlap geneGabrg2, Gabra1
Upstream geneLOC100039256, LOC100039285, Hspd1, LOC100039292
Downstream geneGabra6, Gabrb2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-313P08.bB6Ng01-313P08.g
ACCGA105029GA105030
length1,1071,130
definitionB6Ng01-313P08.b B6Ng01-313P08.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(41,776,716 - 41,777,830)(41,944,999 - 41,946,139)
sequence
gaattctttcctgtacaaacttccccatcatttgtgtgtgtgtgtgtgtg
tgtgtgtgtgtgtgtgtgtgtgtgtgtggtattagttgtagtacatttag
ccttttcttcctctttttcaatatactcagttttgggagcacaaacatat
atacacacatacatacataagtacatacatataaaatttatgtttattat
acttcacagtaacttctattcatagtaactgattctgacttcttttgcta
atttaaaaaaagcatcaacttagctataaatacagtaatctaattttaaa
aaggtaacactgaacatatggcttccaatctagccatgacgagcaaggga
ccactttcctcaatctttccagattctacatgtgaacagcattaaagtag
tacacaaaatgcccctctacaatcagggtgtcatccgttctgagaatgct
ctgggcatgtttgatgttagcttgatgtcaaccagaaacatactggcttt
gatatgtcactttatctaatcattcatttaccctcctcctcctctaacca
aagctacagataactctggtcttactgctgccatcgatgatgctatgcaa
tcactcagtttgcaatgcaatgcattccatgctgttctccgtctgcccat
cactctcttcagactcacagcaccttctattagttattttacattaatag
attttccaggatcaaattgttgcaagaatcaagccgtgctatctgtactg
atattaattttcaatcctttgttttcaatgagccattgaaatagaaatgc
acaaaaaggaaggacaacgagtagaaagaaatgataagttttcaatctag
ccacccaccattaaacgaagccattgtaccaacctggtatttcctttcct
actgcttcattgtgggtttcttccttcgaaaggattaattttctatggga
cctggtaacttgtactggtgtgagaggtgattagatattctcttctgcac
atatatcttataagtgcttcagcagcatcagtgacactgaatggcaggat
tatactagggattagatgcagcattcagcctcgtcagcttgccaattggt
gctggac
gaattctctattcttatgatgaagatgctttcagaggggcaaatctattt
tgcaagctctagaattgttgaatgtattcttttatataactacatcaaaa
gctttagattgaaatttatgactagccaacaaaaaatagaatatataaat
tatatatgtaaatattcagcatgagattgtacatttaatttttttttaag
ttatgttctttaaatatcatgagggatctccacttttagctgttagatgt
tgttaaatgctatggaaatacatttagagcctgcatttaagaacagaaca
gcctgtaggagacagatgccacttaaaacatattgagtatgaaattcaat
tataccgagaactctcataacttcactgctgccctgtgttcaatagtaga
tcagttgctatctgctcgaattatgtcataccatattttcctattttagg
ctattgtgataaagagaaaaaatagggaagagtagttggagctagaaaac
caactgtatattatttctctatttgctgataccaactatttcaataagtg
ctgtaccatatgtagcatctaatataaaatacatgaaagaatgtacagga
actagcttttattgagtaatattattacagttcatttatactgcagcaat
atatttgtaggtatactatgtaagggctttaaataaaagaggtccattaa
tattccttataaaaaattctagcctttcattattgcccagatgttttaga
agtaaatatttatgaagaaggtatttttgaagtctccttttgtctgatag
attttcacagatatttaacattagttcagaatccacggatcatggtctaa
tcacatttataagaccatgatataagccttttagcataatggccaaataa
gacaattagaatccatacctgagtttgagcaatgttaatctcaaaagctg
ctatccaatgatgttggaaaacacactgcctgttgtttccctaaaacgac
aatctctgttcatctaaaatgtgctcaatgtgaatttgtctgctaaattt
catgagcttatgccaaaaaaaaaaaaaaaaaattgctgaacaagacattc
atgttaagatatgtataggaaataaaataa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_41776716_41777830
seq2: B6Ng01-313P08.b_47_1153

seq1  GAATTCTTTCCTGTACAAACTTCCCCATCATTTGTGTGTGTGTGTGTGTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTCCTGTACAAACTTCCCCATCATTTGTGTGTGTGTGTGTGTG  50

seq1  TGTGTGTGTGTGTGTGTGTGTGTGTGTGGTATTAGTTGTAGTACATTTAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTGTGTGTGTGTGTGTGTGTGTGGTATTAGTTGTAGTACATTTAG  100

seq1  CCTTTTCTTCCTCTTTTTCAATATACTCAGTTTTGGGAGCACAAACATAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTTCTTCCTCTTTTTCAATATACTCAGTTTTGGGAGCACAAACATAT  150

seq1  ATACACACATACATACATAAGTACATACATATAAAATTTATGTTTATTAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACACACATACATACATAAGTACATACATATAAAATTTATGTTTATTAT  200

seq1  ACTTCACAGTAACTTCTATTCATAGTAACTGATTCTGACTTCTTTTGCTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCACAGTAACTTCTATTCATAGTAACTGATTCTGACTTCTTTTGCTA  250

seq1  ATTTAAAAAAAGCATCAACTTAGCTATAAATACAGTAATCTAATTTTAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAAAAAAAGCATCAACTTAGCTATAAATACAGTAATCTAATTTTAAA  300

seq1  AAGGTAACACTGAACATATGGCTTCCAATCTAGCCATGACGAGCAAGGGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTAACACTGAACATATGGCTTCCAATCTAGCCATGACGAGCAAGGGA  350

seq1  CCACTTTCCTCAATCTTTCCAGATTCTACATGTGAACAGCATTAAAGTAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTTTCCTCAATCTTTCCAGATTCTACATGTGAACAGCATTAAAGTAG  400

seq1  TACACAAAATGCCCCTCTACAATCAGGGTGTCATCCGTTCTGAGAATGCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACAAAATGCCCCTCTACAATCAGGGTGTCATCCGTTCTGAGAATGCT  450

seq1  CTGGGCATGTTTGATGTTAGCTTGATGTCAACCAGAAACATACTGGCTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGCATGTTTGATGTTAGCTTGATGTCAACCAGAAACATACTGGCTTT  500

seq1  GATATGTCACTTTATCTAATCATTCATTTACCCTCCTCCTCCTCTAACCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATGTCACTTTATCTAATCATTCATTTACCCTCCTCCTCCTCTAACCA  550

seq1  AAGCTACAGATAACTCTGGTCTTACTGCTGCCATCGATGATGCTATGCAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTACAGATAACTCTGGTCTTACTGCTGCCATCGATGATGCTATGCAA  600

seq1  TCACTCAGTTTGCAATGCAATGCATTCCATGCTGTTCTCCGTCTGCCCAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTCAGTTTGCAATGCAATGCATTCCATGCTGTTCTCCGTCTGCCCAT  650

seq1  CACTCTCTTCAGACTCACAGCACCTTCTATTAGTTATTTTACATTAATAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCTCTTCAGACTCACAGCACCTTCTATTAGTTATTTTACATTAATAG  700

seq1  ATTTTCCAGGATCAAATTGTTGCAAGAATCAAGCCGTGCTATCTGTACTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTCCAGGATCAAATTGTTGCAAGAATCAAGCCGTGCTATCTGTACTG  750

seq1  ATATTAATTTTCAATCCTTTGTTTTCAATGAGGCCATTGAAATAGAAATG  800
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  ATATTAATTTTCAATCCTTTGTTTTCAATGA-GCCATTGAAATAGAAATG  799

seq1  CACAAAAAGGAAGGACAACGAGTAGAAAGAAATGATAAGTTTTCAATCTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAAAAGGAAGGACAACGAGTAGAAAGAAATGATAAGTTTTCAATCTA  849

seq1  GCCACCCACCATTAAACGAAGCCATTGTACCAACCTGGTATTTTCCTTTC  900
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  GCCACCCACCATTAAACGAAGCCATTGTACCAACCTGGTA-TTTCCTTTC  898

seq1  CTACTGCTTCATTGT-GGTTTCTTCCTTCGAAA-GATTAATTTTCCTATG  948
      ||||||||||||||| ||||||||||||||||| |||||||||| |||||
seq2  CTACTGCTTCATTGTGGGTTTCTTCCTTCGAAAGGATTAATTTT-CTATG  947

seq1  GGACCTTGGTAACTTGTACT-GTGTGAGAAGTGATTAGATAATTCTCTTC  997
      ||||| |||||||||||||| |||||||| |||||||||| |||||||||
seq2  GGACC-TGGTAACTTGTACTGGTGTGAGAGGTGATTAGAT-ATTCTCTTC  995

seq1  TGCACATATATCTTAATAAGTGCCCTCAGGCAGCATCCAAGTGACACTG-  1046
      |||||||||||||| ||||||| | ||| ||||||||  |||||||||| 
seq2  TGCACATATATCTT-ATAAGTG-CTTCA-GCAGCATC--AGTGACACTGA  1040

seq1  AGGGCAGGGGATTATACTAGGGATTTAGGATGCAGCA-TCAGCCTTCGTC  1095
      | ||||  |||||||||||||||||   ||||||||| |||||| |||||
seq2  ATGGCA--GGATTATACTAGGGATT--AGATGCAGCATTCAGCC-TCGTC  1085

seq1  AGC-TGCC-ATTTGTGCTGAAC  1115
      ||| |||| ||| |||||| ||
seq2  AGCTTGCCAATTGGTGCTGGAC  1107

seq1: chr11_41944999_41946139
seq2: B6Ng01-313P08.g_67_1196 (reverse)

seq1  TTATTTTATTTTCTATACATATCTATACATGAAATGTCCTTTGTTCAGCC  50
      ||||||||||| ||||||||||||  ||||| ||||||  ||||||||| 
seq2  TTATTTTATTTCCTATACATATCTTAACATG-AATGTC--TTGTTCAGCA  47

seq1  ATTTTTTTTTTTTTTTTTTGGCAT-AGCTCATGAAATTTAGGCAGGACCA  99
      |||||||||||||||||||||||| ||||||||||||||| ||| ||| |
seq2  ATTTTTTTTTTTTTTTTTTGGCATAAGCTCATGAAATTTA-GCA-GACAA  95

seq1  AATCAAACAATGAAGCACATTTAAGATGAAACCAGAGATTTGTCGTTTTA  149
      | ||  ||| || ||||||||| |||||||  |||||| |||||||||||
seq2  ATTC--ACATTG-AGCACATTTTAGATGAA--CAGAGA-TTGTCGTTTTA  139

seq1  GGGAAAC-ACAGGCAGTGTGTTTTCCAACATCATTGGATAGCAGCTTTTT  198
      ||||||| ||||||||||||||||||||||||||||||||||||| ||||
seq2  GGGAAACAACAGGCAGTGTGTTTTCCAACATCATTGGATAGCAGC-TTTT  188

seq1  GAGAATAACATTGCTCAAAACTCAGGTATGGATTCTAATTGTCTTATTTG  248
      |||| ||||||||||| |||||||||||||||||||||||||||||||||
seq2  GAGATTAACATTGCTC-AAACTCAGGTATGGATTCTAATTGTCTTATTTG  237

seq1  GCCATTATGCTAAAAGGCTTATATCATGGTCTTATAAATGTGATTAGACC  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATTATGCTAAAAGGCTTATATCATGGTCTTATAAATGTGATTAGACC  287

seq1  ATGATCCGTGGATTCTGAACTAATGTTAAATATCTGTGAAAATCTATCAG  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATCCGTGGATTCTGAACTAATGTTAAATATCTGTGAAAATCTATCAG  337

seq1  ACAAAAGGAGACTTCAAAAATACCTTCTTCATAAATATTTACTTCTAAAA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAAGGAGACTTCAAAAATACCTTCTTCATAAATATTTACTTCTAAAA  387

seq1  CATCTGGGCAATAATGAAAGGCTAGAATTTTTTATAAGGAATATTAATGG  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTGGGCAATAATGAAAGGCTAGAATTTTTTATAAGGAATATTAATGG  437

seq1  ACCTCTTTTATTTAAAGCCCTTACATAGTATACCTACAAATATATTGCTG  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCTTTTATTTAAAGCCCTTACATAGTATACCTACAAATATATTGCTG  487

seq1  CAGTATAAATGAACTGTAATAATATTACTCAATAAAAGCTAGTTCCTGTA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTATAAATGAACTGTAATAATATTACTCAATAAAAGCTAGTTCCTGTA  537

seq1  CATTCTTTCATGTATTTTATATTAGATGCTACATATGGTACAGCACTTAT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCTTTCATGTATTTTATATTAGATGCTACATATGGTACAGCACTTAT  587

seq1  TGAAATAGTTGGTATCAGCAAATAGAGAAATAATATACAGTTGGTTTTCT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAATAGTTGGTATCAGCAAATAGAGAAATAATATACAGTTGGTTTTCT  637

seq1  AGCTCCAACTACTCTTCCCTATTTTTTCTCTTTATCACAATAGCCTAAAA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCCAACTACTCTTCCCTATTTTTTCTCTTTATCACAATAGCCTAAAA  687

seq1  TAGGAAAATATGGTATGACATAATTCGAGCAGATAGCAACTGATCTACTA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGAAAATATGGTATGACATAATTCGAGCAGATAGCAACTGATCTACTA  737

seq1  TTGAACACAGGGCAGCAGTGAAGTTATGAGAGTTCTCGGTATAATTGAAT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAACACAGGGCAGCAGTGAAGTTATGAGAGTTCTCGGTATAATTGAAT  787

seq1  TTCATACTCAATATGTTTTAAGTGGCATCTGTCTCCTACAGGCTGTTCTG  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATACTCAATATGTTTTAAGTGGCATCTGTCTCCTACAGGCTGTTCTG  837

seq1  TTCTTAAATGCAGGCTCTAAATGTATTTCCATAGCATTTAACAACATCTA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTAAATGCAGGCTCTAAATGTATTTCCATAGCATTTAACAACATCTA  887

seq1  ACAGCTAAAAGTGGAGATCCCTCATGATATTTAAAGAACATAACTTAAAA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCTAAAAGTGGAGATCCCTCATGATATTTAAAGAACATAACTTAAAA  937

seq1  AAAAATTAAATGTACAATCTCATGCTGAATATTTACATATATAATTTATA  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATTAAATGTACAATCTCATGCTGAATATTTACATATATAATTTATA  987

seq1  TATTCTATTTTTTGTTGGCTAGTCATAAATTTCAATCTAAAGCTTTTGAT  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCTATTTTTTGTTGGCTAGTCATAAATTTCAATCTAAAGCTTTTGAT  1037

seq1  GTAGTTATATAAAAGAATACATTCAACAATTCTAGAGCTTGCAAAATAGA  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGTTATATAAAAGAATACATTCAACAATTCTAGAGCTTGCAAAATAGA  1087

seq1  TTTGCCCCTCTGAAAGCATCTTCATCATAAGAATAGAGAATTC  1141
      |||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCCCCTCTGAAAGCATCTTCATCATAAGAATAGAGAATTC  1130