BAC Information

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BAC

Clone NameB6Ng01-314C03
Chromosome11 (Build37)
Map Location 110,752,139 - 110,753,185
singlet/doubletsinglet
Overlap genenone
Upstream geneAbca8b, Abca8a, Abca9, Abca6, Abca5, Map2k6, LOC100041523
Downstream geneKcnj16, Kcnj2, LOC667003, LOC100041539, LOC100041559, EG629966, LOC629967
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-314C03.bB6Ng01-314C03.g
ACCGA105157GA105158
length1,1531,043
definitionB6Ng01-314C03.b B6Ng01-314C03.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcatcatttttaatagctgagtagtaccccattgtgtaaatgtacc
acattttatgtatccattcctctgttgaaggacatctaggttttttccaa
cttctggctattataaataatgctgctatgaacataatgtagcatgtgtc
cttattacatgttggagcatcttcttagtacatgctcaggagtggtatag
ctgggtcctcaggtagtactatgtccaattttctgaggaactgctggact
gatttccagagtggttgtaccagcttgtaatcccaccagcaataaaggag
tgttcctctttctccacatcctcaccattatctgctgtcacctgagtttt
tgatcttagccattatgactggtgtgaggtggaatttccaggttgttttg
atttgcatttccctgatgactaaggacgttgaacatttctttaggtgctt
ttcagccattcagtattcctcagttgagaattctttgtttagcactgtgc
cctattttttaagtacggttatttggttctctggagtctaagttcttcag
ttctttgtatatattggatatcagccctttatcaggtgtagggttggtaa
agatctttccctaatctgttggtcgatgttttgtcctattgacagtatcc
tttgccttacagaagctttgcaattaaaaattttttttctaaaagattta
ttcttttttttcttaagtacactgtacctgacttcagacgttccagaaga
cggcatcagatctcattatggatggttgtgagccactgtgtggttgctgg
gatttgaacttgggaccttcagaagagcagtaattgctcttaactgctga
gccatctctccaacaccaagctttgcaattttatgaggttccatgtgtca
ttgttgatcttagagcataagctattggtgttctgttcagaaatttcccc
tgtgcccacatgctccagggtcttccctactttttttttctattagttca
gcatatctgggtttttctggtggagtccttgatccactttgactgagctt
gtacaaggaacatagatgatcaatggcaatcttctaatgctaactggcag
tgagcagcaccatcatgatgcgtgattccatgatgggttagcgtcccttg
tga
gaattcattccacattgatccagcggttaacccagtgtgcctcaatttag
aatcatgcatgggctcatgagggatttagttttgcatatttcagctattg
actattccagataaatatcacagaaatcagtctaacctgaatcttgtgaa
cctattggtgtttctctactcaacacaaatacataggtctttatctacat
gagcactttgttaaaaatacttcactgtaaatatgtgatgagaataacag
agggaacgtcagtgacctcacagcatgctgagtttcagactaccagcttc
tgaatcttgcattttaatgggaattttaaggtatgaaatccttagcaaag
aaacataattctaaaaaaaaaaaaacttacatcaacaataaagtttccaa
agcaaagaaaactcaaataagctgtaagctgaattctatgttcacatcat
tttgatttcaaaaagataaattcaatgtaacacttggaatatttcacaga
ggagaatttggatcagggaaaaaaaccactgtgttaagtcaacagttttg
ctttgaaacttcttccctgttcttgagcgaacacccagacgatcaatgtt
agtgcgagatttcctgaatccaaggaactcgtgcatggtgcaggctccca
ggatgaataatcactggcttccagacacacgtttttggagaataattttt
ttttatttcctagcacttcatttaaaaaaaaaaaacaaaaaaaatccaaa
aaaaaaacaacaaaacaacttctttctcatttttacctttagtatctttt
tctttttttttttttttttgggcaggctgtgactttggcttttatctttc
ttgctaccctccacccacccctgacttctgaccccttgaccacttgtcca
agtgagtattctcacacaaaggtttagtctacacatttaagagctttgac
agaaagtgactggtttacctcttaggaataggtaccatgagactgtaccc
actacctgctatatttttaattgacagtgacttgactgtacat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_110752139_110753185
seq2: B6Ng01-314C03.g_66_1108 (reverse)

seq1  ATGTACAGTCATGTCACTGTCATT---AAATATAGGCAGTAGTGGGTACA  47
      ||||||||||| |||||||||| |   ||||||||   ||||||||||||
seq2  ATGTACAGTCAAGTCACTGTCAATTAAAAATATAGCAGGTAGTGGGTACA  50

seq1  GTCTTCCATGTTA-CTATTTCTAAGAGGT-AACCAGTCACTTTCTGTCAA  95
      ||||  |||| || ||||| ||||||||| ||||||||||||||||||||
seq2  GTCT--CATGGTACCTATTCCTAAGAGGTAAACCAGTCACTTTCTGTCAA  98

seq1  GCTTCCTAAATGTGTAGACT-AACCTTTGTGTGAGAATACTCACTTGGAC  144
         || |||||||||||||| |||||||||||||||||||||||||||||
seq2  AGCTCTTAAATGTGTAGACTAAACCTTTGTGTGAGAATACTCACTTGGAC  148

seq1  AAGTGGTC-AGGGGTCAG-AGTCAGGGGTGGGTGGAGGGTAGC-AGAAGA  191
      |||||||| ||||||||| |||||||||||||||||||||||| ||||  
seq2  AAGTGGTCAAGGGGTCAGAAGTCAGGGGTGGGTGGAGGGTAGCAAGAAAG  198

seq1  TTAAAAGCCAAAGTCACAGGCCTGACCAAAAAAAAAAAAAAAAAAAAAAA  241
       ||||||||||||||||| ||||| ||           ||||||||||||
seq2  ATAAAAGCCAAAGTCACA-GCCTGCCC-----------AAAAAAAAAAAA  236

seq1  AAAAAAAAAAAGATACTAAAGGTAAAAATGAGAAAGAAGTTGTTTTGTTG  291
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAGAAAAAGATACTAAAGGTAAAAATGAGAAAGAAGTTGTTTTGTTG  286

seq1  -TTTTTTTTTGGATTTTTTTTGTTTTTTTTTTTTAAATGAAGTGCTAGGA  340
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTTTGGATTTTTTTTGTTTTTTTTTTTTAAATGAAGTGCTAGGA  336

seq1  AATAAAAAAAAATTATTCTCCAAAAACGTGTGTCTGGAAGCCAGTGATTA  390
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAAAAAAAATTATTCTCCAAAAACGTGTGTCTGGAAGCCAGTGATTA  386

seq1  TTCATCCTGGGAGCCTGCACCATGCACGAGTTCCTTGGATTCAGGAAATC  440
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATCCTGGGAGCCTGCACCATGCACGAGTTCCTTGGATTCAGGAAATC  436

seq1  TCGCACTAACATTGATCGTCTGGGTGTTCGCTCAAGAACAGGGAAGAAGT  490
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGCACTAACATTGATCGTCTGGGTGTTCGCTCAAGAACAGGGAAGAAGT  486

seq1  TTCAAAGCAAAACTGTTGACTTAACACAGTGGTTTTTTTCCCTGATCCAA  540
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAAGCAAAACTGTTGACTTAACACAGTGGTTTTTTTCCCTGATCCAA  536

seq1  ATTCTCCTCTGTGAAATATTCCAAGTGTTACATTGAATTTATCTTTTTGA  590
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTCCTCTGTGAAATATTCCAAGTGTTACATTGAATTTATCTTTTTGA  586

seq1  AATCAAAATGATGTGAACATAGAATTCAGCTTACAGCTTATTTGAGTTTT  640
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCAAAATGATGTGAACATAGAATTCAGCTTACAGCTTATTTGAGTTTT  636

seq1  CTTTGCTTTGGAAACTTTATTGTTGATGTAAGTTTTTTTTTTTTTAGAAT  690
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGCTTTGGAAACTTTATTGTTGATGTAAGTTTTTTTTTTTTTAGAAT  686

seq1  TATGTTTCTTTGCTAAGGATTTCATACCTTAAAATTCCCATTAAAATGCA  740
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTTTCTTTGCTAAGGATTTCATACCTTAAAATTCCCATTAAAATGCA  736

seq1  AGATTCAGAAGCTGGTAGTCTGAAACTCAGCATGCTGTGAGGTCACTGAC  790
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTCAGAAGCTGGTAGTCTGAAACTCAGCATGCTGTGAGGTCACTGAC  786

seq1  GTTCCCTCTGTTATTCTCATCACATATTTACAGTGAAGTATTTTTAACAA  840
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCCCTCTGTTATTCTCATCACATATTTACAGTGAAGTATTTTTAACAA  836

seq1  AGTGCTCATGTAGATAAAGACCTATGTATTTGTGTTGAGTAGAGAAACAC  890
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGCTCATGTAGATAAAGACCTATGTATTTGTGTTGAGTAGAGAAACAC  886

seq1  CAATAGGTTCACAAGATTCAGGTTAGACTGATTTCTGTGATATTTATCTG  940
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATAGGTTCACAAGATTCAGGTTAGACTGATTTCTGTGATATTTATCTG  936

seq1  GAATAGTCAATAGCTGAAATATGCAAAACTAAATCCCTCATGAGCCCATG  990
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATAGTCAATAGCTGAAATATGCAAAACTAAATCCCTCATGAGCCCATG  986

seq1  CATGATTCTAAATTGAGGCACACTGGGTTAACCGCTGGATCAATGTGGAA  1040
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGATTCTAAATTGAGGCACACTGGGTTAACCGCTGGATCAATGTGGAA  1036

seq1  TGAATTC  1047
      |||||||
seq2  TGAATTC  1043