BAC Information

Click to search

BAC

Clone NameB6Ng01-314E11
Chromosome11 (Build37)
Map Location 95,225,187 - 95,391,698
singlet/doubletdoublet
Overlap gene5730593F17Rik, Slc35b1, Spop, LOC100039483, Nxph3
Upstream geneAbcc3, Cacna1g, Spata20, Epn3, Mycbpap, Rsad1, BC018371, Chad, Lrrc59, Eme1, Mrpl27, Xylt2, OTTMUSG00000002038, Cdc34-ps, A430060F13Rik, Tmem92, LOC100039410, LOC544807, LOC544808, LOC665174, LOC432591, LOC100039739, Col1a1, Sgca, Hils1, Ppp1r9b, Samd14, Pdk2, Itga3, Dlx3, Dlx4, LOC100039437, Tac4, Myst2
Downstream geneNgfr, Phb, 1110035M17Rik, Zfp652, EG665273, Phospho1, Abi3, Gngt2, LOC100040014, B4galnt2, Igf2bp1, LOC100040040, Gip, Snf8, Ube2z, Atp5g1, Ndp52, Ttll6, Hoxb13, LOC432593, LOC100039639, Gm53, Hoxb9, Hoxb8, Hoxb7, Hoxb6, Hoxb5, Hoxb4, Hoxb3, Hoxb2, Hoxb1, LOC100040242, OTTMUSG00000001775, Skap1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-314E11.bB6Ng01-314E11.g
ACCGA105258GA105259
length1,0831,005
definitionB6Ng01-314E11.b B6Ng01-314E11.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(95,225,187 - 95,226,280)(95,390,706 - 95,391,698)
sequence
gaattctttcaggaaggtgggaagacatggcaggcagatgaggtatcctg
gaagagaggaggctggttgccatgactccttcctccatgctgatggcaag
gccttgcgggctgtgctctctttcagccagcgttccatgttcggtggccc
cagaaaagtcggtgtgtaggcctcagccaccccaggtccggcgtacgttc
tccctggacaccatcctcagttcctaccttctgggccagtggccacgaga
tgccgatggggccttcacctgctgtaccaatgacaaggccacccaggtaa
tgggatcaggggggtgggagggctggctgaggccactggtgacttctgtc
acaaaagtgacttgacctgggttttgggtgtacataaaagcttttcttct
tctactgtttaccagggtttttccatctttgttttcttttgtaaacatag
gtgaaaatgagtttgcattccacctggtggaaaagagacgtcaagctggg
gcttacagtttggatttcagggtttacatgtggagaatctgcagctggct
tttaagtttgggacttttaaaatgagatttgccctcctgaagttaaacta
aggccaacatttggtccagtttgcattccccaggcattcgaggaagtggc
caaagaggcgctgagccagggtcgaccccattggatcagtaggtgtaggg
cattctcgtgaagagctacaccttgccagcagccaggccagagctgctcc
agggcatccgagtcctgcacagcccagctttctctcctgtgttttcatga
acagtcctgcccttggaagggatctccacagaccatccagcccatgtgtc
catcttttggataagatttgtttacttgagcaaaaaagtcaatctcatct
ggaattaccaagaagtttcttagtctgacctagatttcagtctcttagca
ttaaagtttgggtaagagccaggctccctttgggggcagcttaagctgag
tctctccaactgcaggagaacacctagcctggtccagcccttcatttctg
gtaacgacagaaggggtgaagcagctcttcctt
gaattccagaaaatgggtaccacatgtcctgatggatgctggaacagaaa
atgggcaccagatacaaacgaaggacacttgaataaactgcggactttaa
tcgtaacatatcaacattggctcattgctctcgtagcaaatgaaccgtac
ttatgtaaatggtttgactggggcaggggaggcccacagctgggaacaag
ctatgctagttgatcagagtgtttgttattggttttggtttggtttggtt
tttctttttctgtaaatgaagagttttttattttgttttgtttttgtttt
ttcgagacagggtttctctgtgtagccctggctgtcctggaactcactct
gtagaccagactggcctcaaactcagaaatctgcctccctctgcccaccc
cccaagtgctgggactaaagatgtgcgccaccactgccaggtgtgaagag
gttttttgtcatccttttttttttttttttttttttgtcttccaagaaag
ggacttactatgtagctcaggctgtcctggaacttgtatggaccctcctg
tctgcctccagagttctggattagggcatgtgctgccacccctggctgcc
tactcttttctaaggtacccaccccccttttgtttaaattgcagctctga
cccctgaggagccatgtctcttcccatatccacttgtgcctctgcctgat
ttttatttttgcctcctattggcacatagtttattttatagagatgatat
tagttctttgctacatatatttcaatctattgtctgtttctcatccattg
ggattttatccatgaaaccttacgtcaaaataagtcttcataaacaactt
ctcttctttttctctctcctgctccctttctccccccccccccccttatc
ttgtcttgggcttctcaatctcctgtctactttaggaagattggagagat
gacttcagccattaagacacaggctgttcttcgaggaggacctaaggttc
cgatt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_95225187_95226280
seq2: B6Ng01-314E11.b_47_1129

seq1  GAATTCTTTCAGGAAGGTGGGAAGACATGGCAGGCAGATGAGGTATCCTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTCAGGAAGGTGGGAAGACATGGCAGGCAGATGAGGTATCCTG  50

seq1  GAAGAGAGGAGGCTGGTTGCCATGACTCCTTCCTCCATGCTGATGGCAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAGAGGAGGCTGGTTGCCATGACTCCTTCCTCCATGCTGATGGCAAG  100

seq1  GCCTTGCGGGCTGTGCTCTCTTTCAGCCAGCGTTCCATGTTCGGTGGCCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTGCGGGCTGTGCTCTCTTTCAGCCAGCGTTCCATGTTCGGTGGCCC  150

seq1  CAGAAAAGTCGGTGTGTAGGCCTCAGCCACCCCAGGTCCGGCGTACGTTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAAAGTCGGTGTGTAGGCCTCAGCCACCCCAGGTCCGGCGTACGTTC  200

seq1  TCCCTGGACACCATCCTCAGTTCCTACCTTCTGGGCCAGTGGCCACGAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTGGACACCATCCTCAGTTCCTACCTTCTGGGCCAGTGGCCACGAGA  250

seq1  TGCCGATGGGGCCTTCACCTGCTGTACCAATGACAAGGCCACCCAGGTAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCGATGGGGCCTTCACCTGCTGTACCAATGACAAGGCCACCCAGGTAA  300

seq1  TGGGATCAGGGGGGTGGGAGGGCTGGCTGAGGCCACTGGTGACTTCTGTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGATCAGGGGGGTGGGAGGGCTGGCTGAGGCCACTGGTGACTTCTGTC  350

seq1  ACAAAAGTGACTTGACCTGGGTTTTGGGTGTACATAAAAGCTTTTCTTCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAAGTGACTTGACCTGGGTTTTGGGTGTACATAAAAGCTTTTCTTCT  400

seq1  TCTACTGTTTACCAGGGTTTTTCCATCTTTGTTTTCTTTTGTAAACATAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACTGTTTACCAGGGTTTTTCCATCTTTGTTTTCTTTTGTAAACATAG  450

seq1  GTGAAAATGAGTTTGCATTCCACCTGGTGGAAAAGAGACGTCAAGCTGGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAAAATGAGTTTGCATTCCACCTGGTGGAAAAGAGACGTCAAGCTGGG  500

seq1  GCTTACAGTTTGGATTTCAGGGTTTACATGTGGAGAATCTGCAGCTGGCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTACAGTTTGGATTTCAGGGTTTACATGTGGAGAATCTGCAGCTGGCT  550

seq1  TTTAAGTTTGGGACTTTTAAAATGAGATTTGCCCTCCTGAAGTTAAACTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAGTTTGGGACTTTTAAAATGAGATTTGCCCTCCTGAAGTTAAACTA  600

seq1  AGGCCAACATTTGGTCCAGTTTGCATTCCCCAGGCATTCGAGGAAGTGGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCAACATTTGGTCCAGTTTGCATTCCCCAGGCATTCGAGGAAGTGGC  650

seq1  CAAAGAGGCGCTGAGCCAGGGTCGACCCCATTGGATCAGTAGGTGTAGGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGAGGCGCTGAGCCAGGGTCGACCCCATTGGATCAGTAGGTGTAGGG  700

seq1  CATTCTCGTGAAGAGCTACACCTTGCCAGCAGCCAGGCCAGAGCTGCTCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCTCGTGAAGAGCTACACCTTGCCAGCAGCCAGGCCAGAGCTGCTCC  750

seq1  AGGGCATCCGAGTCCTGCACAGCCCAGCTTTCTCTCCTGTGTTTTCATGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGCATCCGAGTCCTGCACAGCCCAGCTTTCTCTCCTGTGTTTTCATGA  800

seq1  ACAGTCCTGCCCTTGGAAGGGATCTCCACAGACCATCCAGCCCATGTGTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTCCTGCCCTTGGAAGGGATCTCCACAGACCATCCAGCCCATGTGTC  850

seq1  CATCTTTTGGATAAGATTTGTTAACTTGAGCAAAAAAGTCAATCTCATCT  900
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  CATCTTTTGGATAAGATTTGTTTACTTGAGCAAAAAAGTCAATCTCATCT  900

seq1  GGAAATTACCCAAAGAAGTTTCTTAGTCTGACCTAGGATTTCAGTCTTCT  950
      || |||||||  ||||||||||||||||||||||| |||||||||| |||
seq2  GG-AATTACC--AAGAAGTTTCTTAGTCTGACCTA-GATTTCAGTC-TCT  945

seq1  TAGCATTTAAGTTT-GGTAAGAGCCAGGCTCCCTTTGGGGGCAGCTTAAG  999
      ||||||| |||||| |||||||||||||||||||||||||||||||||||
seq2  TAGCATTAAAGTTTGGGTAAGAGCCAGGCTCCCTTTGGGGGCAGCTTAAG  995

seq1  CTGAGTCCTCTTCAACTTGCAGGGAAGAACACCTAGCTTGGCCCAGCCCT  1049
      |||||| |||| |||| ||||||  |||||||||||| ||| ||||||||
seq2  CTGAGT-CTCTCCAAC-TGCAGG--AGAACACCTAGCCTGGTCCAGCCCT  1041

seq1  TCATTCTGGGTAACAGGACAAGAAGGGGTGAGGCAGCTCTTCCTT  1094
      |||||   ||||||  ||| ||||||||||| |||||||||||||
seq2  TCATTTCTGGTAAC--GAC-AGAAGGGGTGAAGCAGCTCTTCCTT  1083

seq1: chr11_95390706_95391698
seq2: B6Ng01-314E11.g_64_1068 (reverse)

seq1  AATC-GAACC-TAGGTCCT-CTCGAAGAACAGCCTGTGTCTTAATGGCTG  47
      |||| ||||| |||||||| ||||||||||||||||||||||||||||||
seq2  AATCGGAACCTTAGGTCCTCCTCGAAGAACAGCCTGTGTCTTAATGGCTG  50

seq1  -AGTCATCTCTCCAATCTTCTTAAGTAAGACAGGAGATTGAGAAG-CCAA  95
       ||||||||||||||||||| |||   |||||||||||||||||| ||||
seq2  AAGTCATCTCTCCAATCTTCCTAAAGTAGACAGGAGATTGAGAAGCCCAA  100

seq1  GAC-AGATAA--GGGGGGGGGGGGAGAAAGGGAGCAGGAGAGAGAAAA--  140
      ||| ||||||  ||||||||||||||||||||||||||||||||||||  
seq2  GACAAGATAAGGGGGGGGGGGGGGAGAAAGGGAGCAGGAGAGAGAAAAAG  150

seq1  GAGAGAAGTTGTTTATGAAGACTTA-TTTGACGTAAGGTTTCATGGATAA  189
       |||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  AAGAGAAGTTGTTTATGAAGACTTATTTTGACGTAAGGTTTCATGGATAA  200

seq1  AAT-CCAATGGATGAGAAACAGACAATAGATTGAAATATATGTAGCAAAG  238
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCCAATGGATGAGAAACAGACAATAGATTGAAATATATGTAGCAAAG  250

seq1  AACTAATATCATCTCTATAAAATAAACTATGTGCCAATAGGAGGCAAAAA  288
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTAATATCATCTCTATAAAATAAACTATGTGCCAATAGGAGGCAAAAA  300

seq1  TAAAAATCAGGCAGAGGCACAAGTGGATATGGGAAGAGACATGGCTCCTC  338
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAATCAGGCAGAGGCACAAGTGGATATGGGAAGAGACATGGCTCCTC  350

seq1  AGGGGTCAGAGCTGCAATTTAAACAAAAGGGGGGTGGGTACCTTAGAAAA  388
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGTCAGAGCTGCAATTTAAACAAAAGGGGGGTGGGTACCTTAGAAAA  400

seq1  GAGTAGGCAGCCAGGGGTGGCAGCACATGCCCTAATCCAGAACTCTGGAG  438
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTAGGCAGCCAGGGGTGGCAGCACATGCCCTAATCCAGAACTCTGGAG  450

seq1  GCAGACAGGAGGGTCCATACAAGTTCCAGGACAGCCTGAGCTACATAGTA  488
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGACAGGAGGGTCCATACAAGTTCCAGGACAGCCTGAGCTACATAGTA  500

seq1  AGTCCCTTTCTTGGAAGACAAAAAAAAAAAAAAAAAAAAAAGGATGACAA  538
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCCCTTTCTTGGAAGACAAAAAAAAAAAAAAAAAAAAAAGGATGACAA  550

seq1  AAAACCTCTTCACACCTGGCAGTGGTGGCGCACATCTTTAGTCCCAGCAC  588
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACCTCTTCACACCTGGCAGTGGTGGCGCACATCTTTAGTCCCAGCAC  600

seq1  TTGGGGGGTGGGCAGAGGGAGGCAGATTTCTGAGTTTGAGGCCAGTCTGG  638
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGGGGTGGGCAGAGGGAGGCAGATTTCTGAGTTTGAGGCCAGTCTGG  650

seq1  TCTACAGAGTGAGTTCCAGGACAGCCAGGGCTACACAGAGAAACCCTGTC  688
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACAGAGTGAGTTCCAGGACAGCCAGGGCTACACAGAGAAACCCTGTC  700

seq1  TCGAAAAAACAAAAACAAAACAAAATAAAAAACTCTTCATTTACAGAAAA  738
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGAAAAAACAAAAACAAAACAAAATAAAAAACTCTTCATTTACAGAAAA  750

seq1  AGAAAAACCAAACCAAACCAAAACCAATAACAAACACTCTGATCAACTAG  788
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAAACCAAACCAAACCAAAACCAATAACAAACACTCTGATCAACTAG  800

seq1  CATAGCTTGTTCCCAGCTGTGGGCCTCCCCTGCCCCAGTCAAACCATTTA  838
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGCTTGTTCCCAGCTGTGGGCCTCCCCTGCCCCAGTCAAACCATTTA  850

seq1  CATAAGTACGGTTCATTTGCTACGAGAGCAATGAGCCAATGTTGATATGT  888
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAAGTACGGTTCATTTGCTACGAGAGCAATGAGCCAATGTTGATATGT  900

seq1  TACGATTAAAGTCCGCAGTTTATTCAAGTGTCCTTCGTTTGTATCTGGTG  938
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACGATTAAAGTCCGCAGTTTATTCAAGTGTCCTTCGTTTGTATCTGGTG  950

seq1  CCCATTTTCTGTTCCAGCATCCATCAGGACATGTGGTACCCATTTTCTGG  988
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATTTTCTGTTCCAGCATCCATCAGGACATGTGGTACCCATTTTCTGG  1000

seq1  AATTC  993
      |||||
seq2  AATTC  1005