BAC Information

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BAC

Clone NameB6Ng01-315E22
Chromosome11 (Build37)
Map Location 117,819,063 - 117,927,319
singlet/doubletdoublet
Overlap geneSocs3, Pgs1, Dnahc17
Upstream geneMgat5b, LOC100042036, Sec14l1, Sept9, EG667423, Tnrc6c, Tmc6, Tmc8, 6030468B19Rik, Syngr2, Tk1, Afmid, Birc5, LOC546519, Tha1
Downstream genePscd1, Usp36, Timp2, Ddc8, Lgals3bp, Cant1, C1qtnf1, D230014K01Rik, D11Bwg0517e, Enpp7, Cbx2, Cbx8
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-315E22.bB6Ng01-315E22.g
ACCGA105992GA105993
length1,189252
definitionB6Ng01-315E22.b B6Ng01-315E22.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(117,926,157 - 117,927,319)(117,819,063 - 117,819,314)
sequence
gaattcagagccacttttagcctcatgccgggtctggtcatcctgaattg
actgagtccaccacggtggagcagatctgctgtgccccaggcccgccgct
gagccctcccattgattcctccttcccgaaagttggtctcacagggagca
tgtgccagtcaagcactattaagccggagcaagttgtcagagtgcaggca
aagagacctgaaattgatcagggcacactacacagtcgtatctgtctatg
tccgtgctggagctgcctctgcagggcctgggtgatgcccgagcagcccg
ggaaggccctagaggatgctccccacagcagatacagcaatcccctcgct
ctatcagagggaaagcttggaaagcttggtgtctcggatgcggggtgcag
atgaggctctgaaggggacaggaagcactggtgggggctgcagggatcag
gagtgtggaccaggaaccacaacctttgaaccattccccgtacattctgg
tggcttccattctgcgtatagcatgactagtcaactctgccttcaaactc
tagtgtgaaggggcagggcctcccacttgaagctttctgcaccgttccct
ctctcacgtgtttgtcttccgtgatgttaccacgccaactcaagagctgt
ctaaaccgcgtccccaagagccaatgttttctaagattctgcctatctac
ccaccagcttgtactccttccctatggggactttactgccaggtctttgc
tttacagccaatagcgggcatccagtcctttactagtggacatcagccac
agtagcactgtaactgtggtctggaaacctgtcacttccacacccgcgtg
gggctagctttcttctctctgcagacctcaaagctaagagtggagaaaaa
gctgggggaggagtactctcatgccttagaggggagcgggttaattctgt
tcttaacagtggtgggcgtggtgcagagttgaccaggtgctctagtgttt
cctggtgtcgtgccgctggttctttaggtgactcctgtaagtgcagtact
ctacctaggagactaaagaatagcggagggtgaagattgggagttaactt
ggaggcacttcaggcatccctacattggaactactgggcccttcttgttc
tctaagaaagaatgcatgaacccaaagagaacggcaggt
agaaatctgctgaatcccaagtgttggaatgaaagacataggccactata
catggcttctacttttttggggggtgggagatggggggttctcactgact
ctggagtttactgatttgaccatactatctggccaatgaccccagggatg
cccctgtgtctgccttcccagttttggggtgatatgtgaggagtgctgtg
cctggttgtttacatatgagctggagatcccaactcagatccctgcttgt
at
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_117926157_117927319
seq2: B6Ng01-315E22.b_46_1234 (reverse)

seq1  ACCTGCC-CTCTCTTT--GCTCATGCA-TCTTTCTT-GGGA-----CAGA  40
      |||||||  |||||||  | ||||||| |||||||| | ||      || 
seq2  ACCTGCCGTTCTCTTTGGGTTCATGCATTCTTTCTTAGAGAACAAGAAGG  50

seq1  GGCCAGTGGTTCCCATGT---GGTGCCCTGAGTGCTTCCAAGTAAACTTC  87
      | ||||| ||||| ||||   | ||||   ||||| ||||||| ||| ||
seq2  GCCCAGTAGTTCCAATGTAGGGATGCCTGAAGTGCCTCCAAGTTAAC-TC  99

seq1  CAAATCTTCA-CCTCGCCTA-TCTTTAGTCTC--TGGT-GGGTACCTGCC  132
      | |||||||| ||||  ||| |||||||||||   ||| | ||| ||| |
seq2  CCAATCTTCACCCTCCGCTATTCTTTAGTCTCCTAGGTAGAGTA-CTG-C  147

seq1  ACTTCCAGGAGTCACCTTAAAGAA-CAGCGGCACGACACCAGG-AACACT  180
      |||| ||||||||||| ||||||| |||||||||||||||||| ||||||
seq2  ACTTACAGGAGTCACC-TAAAGAACCAGCGGCACGACACCAGGAAACACT  196

seq1  AGGGCACCTGGTCAACTCTGCACCACG-CCACCACTG-TAAG-ACAG-AT  226
      || |||||||||||||||||||||||| ||||||||| |||| |||| ||
seq2  AGAGCACCTGGTCAACTCTGCACCACGCCCACCACTGTTAAGAACAGAAT  246

seq1  TAA-CCGCTCCCCTCCTAAGGCATG-GGGT-CTCCT-CCCCAGCTTTTTC  272
      ||| |||||||||| |||||||||| | || ||||| |||||||||||||
seq2  TAACCCGCTCCCCT-CTAAGGCATGAGAGTACTCCTCCCCCAGCTTTTTC  295

seq1  TCCACTCTTAGCTTTG-GGTCTGCAGAG-GGAGGAAGCTAGCCCCACGCG  320
      |||||||||||||||| ||||||||||| | || ||||||||||||||||
seq2  TCCACTCTTAGCTTTGAGGTCTGCAGAGAGAAGAAAGCTAGCCCCACGCG  345

seq1  GGTGTGG-GGTGACAGGTTTCCAGACCACAGTTACAGTGCTACTGTGGCT  369
      |||||||  |||||||||||||||||||||||||||||||||||||||||
seq2  GGTGTGGAAGTGACAGGTTTCCAGACCACAGTTACAGTGCTACTGTGGCT  395

seq1  GATGTCCACTAGTAAAGGACTGGATGCCCGCTATTGGCTGTAAAGCAAAG  419
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTCCACTAGTAAAGGACTGGATGCCCGCTATTGGCTGTAAAGCAAAG  445

seq1  ACCTGGCAGTAAAGTCCCCATAGGGAAGGAGTACAAGCTGGTGGGTAGAT  469
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGGCAGTAAAGTCCCCATAGGGAAGGAGTACAAGCTGGTGGGTAGAT  495

seq1  AGGCAGAATCTTAGAAAACATTGGCTCTTGGGGACGCGGTTTAGACAGCT  519
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAGAATCTTAGAAAACATTGGCTCTTGGGGACGCGGTTTAGACAGCT  545

seq1  CTTGAGTTGGCGTGGTAACATCACGGAAGACAAACACGTGAGAGAGGGAA  569
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGAGTTGGCGTGGTAACATCACGGAAGACAAACACGTGAGAGAGGGAA  595

seq1  CGGTGCAGAAAGCTTCAAGTGGGAGGCCCTGCCCCTTCACACTAGAGTTT  619
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGTGCAGAAAGCTTCAAGTGGGAGGCCCTGCCCCTTCACACTAGAGTTT  645

seq1  GAAGGCAGAGTTGACTAGTCATGCTATACGCAGAATGGAAGCCACCAGAA  669
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGCAGAGTTGACTAGTCATGCTATACGCAGAATGGAAGCCACCAGAA  695

seq1  TGTACGGGGAATGGTTCAAAGGTTGTGGTTCCTGGTCCACACTCCTGATC  719
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACGGGGAATGGTTCAAAGGTTGTGGTTCCTGGTCCACACTCCTGATC  745

seq1  CCTGCAGCCCCCACCAGTGCTTCCTGTCCCCTTCAGAGCCTCATCTGCAC  769
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCAGCCCCCACCAGTGCTTCCTGTCCCCTTCAGAGCCTCATCTGCAC  795

seq1  CCCGCATCCGAGACACCAAGCTTTCCAAGCTTTCCCTCTGATAGAGCGAG  819
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCGCATCCGAGACACCAAGCTTTCCAAGCTTTCCCTCTGATAGAGCGAG  845

seq1  GGGATTGCTGTATCTGCTGTGGGGAGCATCCTCTAGGGCCTTCCCGGGCT  869
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGATTGCTGTATCTGCTGTGGGGAGCATCCTCTAGGGCCTTCCCGGGCT  895

seq1  GCTCGGGCATCACCCAGGCCCTGCAGAGGCAGCTCCAGCACGGACATAGA  919
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCGGGCATCACCCAGGCCCTGCAGAGGCAGCTCCAGCACGGACATAGA  945

seq1  CAGATACGACTGTGTAGTGTGCCCTGATCAATTTCAGGTCTCTTTGCCTG  969
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATACGACTGTGTAGTGTGCCCTGATCAATTTCAGGTCTCTTTGCCTG  995

seq1  CACTCTGACAACTTGCTCCGGCTTAATAGTGCTTGACTGGCACATGCTCC  1019
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCTGACAACTTGCTCCGGCTTAATAGTGCTTGACTGGCACATGCTCC  1045

seq1  CTGTGAGACCAACTTTCGGGAAGGAGGAATCAATGGGAGGGCTCAGCGGC  1069
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGAGACCAACTTTCGGGAAGGAGGAATCAATGGGAGGGCTCAGCGGC  1095

seq1  GGGCCTGGGGCACAGCAGATCTGCTCCACCGTGGTGGACTCAGTCAATTC  1119
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCCTGGGGCACAGCAGATCTGCTCCACCGTGGTGGACTCAGTCAATTC  1145

seq1  AGGATGACCAGACCCGGCATGAGGCTAAAAGTGGCTCTGAATTC  1163
      ||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATGACCAGACCCGGCATGAGGCTAAAAGTGGCTCTGAATTC  1189

seq1: chr11_117819063_117819314
seq2: B6Ng01-315E22.g_72_323

seq1  AGAAATCTGCTGAATCCCAAGTGTTGGAATGAAAGACATAGGCCACTATA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAATCTGCTGAATCCCAAGTGTTGGAATGAAAGACATAGGCCACTATA  50

seq1  CATGGCTTCTACTTTTTTGGGGGGTGGGAGATGGGGGGTTCTCACTGACT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGCTTCTACTTTTTTGGGGGGTGGGAGATGGGGGGTTCTCACTGACT  100

seq1  CTGGAGTTTACTGATTTGACCATACTAGCTGGCCAATGACCCCAGGGATG  150
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  CTGGAGTTTACTGATTTGACCATACTATCTGGCCAATGACCCCAGGGATG  150

seq1  CCCCTGTGTCTGCCTTCCCAGTTTTGGGGTGATATGTGAGGAGTGCTGTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTGTGTCTGCCTTCCCAGTTTTGGGGTGATATGTGAGGAGTGCTGTG  200

seq1  CCTGGCTGTTTACACATGAGCTGGAGATCCTAACACAGTTCCCTGCTTGT  250
      ||||| |||||||| ||||||||||||||| ||| ||| |||||||||||
seq2  CCTGGTTGTTTACATATGAGCTGGAGATCCCAACTCAGATCCCTGCTTGT  250

seq1  AT  252
      ||
seq2  AT  252