BAC Information

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BAC

Clone NameB6Ng01-315J10
Chromosome11 (Build37)
Map Location 5,408,926 - 5,410,057
singlet/doubletsinglet
Overlap genenone
Upstream geneMtmr3, LOC100041006, OTTMUSG00000005065, Ascc2, 1110020P15Rik, Zmat5, Cabp7, Nf2, Nipsnap1, Thoc5, Nefh, Ap1b1, Rasl10a, Gas2l1, Ewsr1, Rhbdd3, Emid1, Kremen1, Znrf3, LOC100042016, LOC382478
Downstream geneXbp1, Ccdc117, LOC100041183, Ankrd36, LOC665181, Mrps24, 2010005J08Rik, 2210015D19Rik, Dbnl, Pgam2, Polm, Aebp1, Pold2, Myl7, Gck, Ykt6, Camk2b, LOC100042156, Nudcd3, LOC100042173, Npc1l1, LOC100041242, LOC665250, Ddx56, Tmed4, Ogdh, LOC100042227, Zmiz2, Ppia, H2afv, LOC665277, LOC665283, LOC626342, Purb, Myo1g
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-315J10.bB6Ng01-315J10.g
ACCGA106199GA106200
length1,0901,124
definitionB6Ng01-315J10.b B6Ng01-315J10.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctgtaggcttcttgtatgttcatgggcatctctttatttagctta
gggaagttttcttctataattttgttgaagatatttactggccctttaag
ttgaaaatcttcattgtcatctatacctattatccttaggtttggtcttc
tcagtgtgtcctggatttcctggatgttttgggttaggatctttttgcat
tttctttgattgttgtgtccatgttctctatggaactttctgcaccccag
attctctcttccatctcttgtattctgttgctgatgctctcgcatctatg
gttcctgacttctttcctagggtttctatctccagagttgtctccctttg
agttttcttcattgttcctacttccatttttagatcttggatggttttgt
tcaattccaacaccggtttggttgtgttttcctgtaattctttaaggggt
ttttgtgtttcctctttaaggccttctatctgtttagcagtgttctcctg
taattccttgagggatttttgtgcttcctctttaagggcttctatttagt
agtgttctcctatatttctttgagttattaatgcccttcttaaaatcctc
tatcagcatcatgagatacaattttaaatctgaatctttctttttaggtg
tgttggggtatccaggactcactgtggtgggtgtactgggttctgatgat
gccgagtggtcttgattttagttagtaagatttctttcatttgccttttg
ccatctggtaatctctggtgttagatgttctagctgtccctggctggagc
ttgttactcctgtgattctttagccttctgttcagcactcctgggagacc
aactctctcctgagtcccagttggtgagagcacttctctaccagcaagct
ctcctctggcagggaaggtgcccaggggtctgagtctcagctctgtctcg
tggcttggaggattaaagtcgagaaagggtccctgtccaataaaagaagc
ttctgttgcttctgcctgcccacgtgctctcctgcatagacttggtctca
gagattccagtatcttgggtgtgtctaggccctgcctttg
gaattctgtgcccattcttcagaacaatttctacacctgactagctgatt
gtcaggcggatagatgtaggcaggaaccagaggcagccgctaccttcaag
gtctgctctggggatgacaggtcggtctgagctataggaacagcaggtac
aatctggagggatgcttgccttgagttcagagcagtgagtcttagcgaga
ggcaagggattttgtaggtaaagaccccagacatgctttaaatacctcgt
gtggcacaaaacatgggataacctccccacaaagaattgtctagcgccaa
atgtcaataattctgaggtagaaaaactgacttaaacagaaagaggaaat
gggatttgtgagcataataaaagggaaggaggggctggaaagatggctca
agctgccaaggtggccaccacagaagcatgaggatggagccctgttcaag
tctcccgcactcacatgacaaagaggcacactggcacacgcctgcacacc
ctgaggaggagacagcactcacatgacaaagaggcacactggcacacacc
tgcacaccctgaggaggagacaggaagatcccttggtttgctggtgagcc
aggctggccacagtgactcagtgaaaccgtgagtccccaaatagggtaaa
gagtgataggcaagaccagaagccagtctctggcctttgaacatacactc
ctgtatgaacacttgagtgcacacacgggtgaccgcaagcgcatgcacac
acacacacaacccatctcacatgagacagggctgcagctgagacagggat
aaacaagaagagtcatcaatggtcctaagctgattatcttttaatcactc
acaagagtgactcctgctaagtgtctcatcttatctcctggcatcagaaa
gcaggctactgtggcaggaccagctacttgcagatgctctctctgctcag
gggtggttcctcccagttgctggcaacccatccatgagagcaacaaaagt
ctcagtgttcagaggaggtcatcccagcagtggggaagcaggatcatgct
ttctgatatgtcatgggaaccggctggcctgtattacagtctgcatactg
tgcatgtggaacgctcagtcctgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_5408926_5410057
seq2: B6Ng01-315J10.g_68_1191

seq1  GAATTCTGTGCCCATTCTTCAGAACAATTTCTACACCTGACTAGCTGATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGTGCCCATTCTTCAGAACAATTTCTACACCTGACTAGCTGATT  50

seq1  GTCAGGCGGATAGATGTAGGCAGGAACCAGAGGCAGCCGCTACCTTCAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGGCGGATAGATGTAGGCAGGAACCAGAGGCAGCCGCTACCTTCAAG  100

seq1  GTCTGCTCTGGGGATGACAGGTCGGTCTGAGCTATAGGAACAGCAGGTAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGCTCTGGGGATGACAGGTCGGTCTGAGCTATAGGAACAGCAGGTAC  150

seq1  AATCTGGAGGGATGCTTGCCTTGAGTTCAGAGCAGTGAGTCTTAGCGAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTGGAGGGATGCTTGCCTTGAGTTCAGAGCAGTGAGTCTTAGCGAGA  200

seq1  GGCAAGGGATTTTGTAGGTAAAGACCCCAGACATGCTTTAAATACCTCGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAAGGGATTTTGTAGGTAAAGACCCCAGACATGCTTTAAATACCTCGT  250

seq1  GTGGCACAAAACATGGGATAACCTCCCCACAAAGAATTGTCTAGCGCCAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGCACAAAACATGGGATAACCTCCCCACAAAGAATTGTCTAGCGCCAA  300

seq1  ATGTCAATAATTCTGAGGTAGAAAAACTGACTTAAACAGAAAGAGGAAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCAATAATTCTGAGGTAGAAAAACTGACTTAAACAGAAAGAGGAAAT  350

seq1  GGGATTTGTGAGCATAATAAAAGGGAAGGAGGGGCTGGAAAGATGGCTCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGATTTGTGAGCATAATAAAAGGGAAGGAGGGGCTGGAAAGATGGCTCA  400

seq1  AGCTGCCAAGGTGGCCACCACAGAAGCATGAGGATGGAGCCCTGTTCAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGCCAAGGTGGCCACCACAGAAGCATGAGGATGGAGCCCTGTTCAAG  450

seq1  TCTCCCGCACTCACATGACAAAGAGGCACACTGGCACACGCCTGCACACC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCCGCACTCACATGACAAAGAGGCACACTGGCACACGCCTGCACACC  500

seq1  CTGAGGAGGAGACAGCACTCACATGACAAAGAGGCACACTGGCACACACC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGGAGGAGACAGCACTCACATGACAAAGAGGCACACTGGCACACACC  550

seq1  TGCACACCCTGAGGAGGAGACAGGAAGATCCCTTGGTTTGCTGGTGAGCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACACCCTGAGGAGGAGACAGGAAGATCCCTTGGTTTGCTGGTGAGCC  600

seq1  AGGCTGGCCACAGTGACTCAGTGAAACCGTGAGTCCCCAAATAGGGTAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTGGCCACAGTGACTCAGTGAAACCGTGAGTCCCCAAATAGGGTAAA  650

seq1  GAGTGATAGGCAAGACCAGAAGCCAGTCTCTGGCCTTTGAACATACACTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGATAGGCAAGACCAGAAGCCAGTCTCTGGCCTTTGAACATACACTC  700

seq1  CTGTATGAACACTTGAGTGCACACACGGGTGACCGCAAGCGCATGCACAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTATGAACACTTGAGTGCACACACGGGTGACCGCAAGCGCATGCACAC  750

seq1  ACACACACAACCCATCTCACATGAGACAGGGCTGCAGCTGAGACAGGGAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACAACCCATCTCACATGAGACAGGGCTGCAGCTGAGACAGGGAT  800

seq1  AAACAAGAAGAGTCATCAATGGTCCTAAGCTGATTATCTTTTAATCACTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAAGAAGAGTCATCAATGGTCCTAAGCTGATTATCTTTTAATCACTC  850

seq1  ACAAGAGTGACTCCTGCTAAGTGTCTCATCTTATCTCCTGGCATCAGAAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGAGTGACTCCTGCTAAGTGTCTCATCTTATCTCCTGGCATCAGAAA  900

seq1  GCAGGCTACTGTGGCAGGACCAGCTACTTGCAGATGCTCTCTCTGCTCAG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGCTACTGTGGCAGGACCAGCTACTTGCAGATGCTCTCTCTGCTCAG  950

seq1  GGGTGGTTCCTCCCAG-TGCTGGCAACCCATCCATGAGAGCAACAAAAGT  999
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  GGGTGGTTCCTCCCAGTTGCTGGCAACCCATCCATGAGAGCAACAAAAGT  1000

seq1  CTCAGTGTTCAGA-GAGGCCATCCCAGGCAGTGGGGAAAGCAGGGATCAT  1048
      ||||||||||||| |||| ||||||| ||||||||| ||||| |||||||
seq2  CTCAGTGTTCAGAGGAGGTCATCCCA-GCAGTGGGG-AAGCA-GGATCAT  1047

seq1  GCTTTCTGATATGTCATGGGAACCCGGCTGCCCTGGTATTTACAGTTCTT  1098
      |||||||||||||||||||||| ||||||| ||| ||| |||||||   |
seq2  GCTTTCTGATATGTCATGGGAA-CCGGCTGGCCT-GTA-TTACAGT--CT  1092

seq1  GCATAACTGTGCATGTGGGAGTGCTCAGTCCTGG  1132
      |||| ||||||||||| |||  ||||||||||||
seq2  GCAT-ACTGTGCATGT-GGAACGCTCAGTCCTGG  1124