BAC Information

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BAC

Clone NameB6Ng01-315O18
Chromosome11 (Build37)
Map Location 88,519,399 - 88,668,109
singlet/doubletdoublet
Overlap geneLOC100038945
Upstream geneRnf43, Supt4h1, Bzrap1, Mpo, Lpo, Mks1, Epx, Olfr462, Olfr463, Olfr464, Dynll2, Sfrs1, Vezf1, Cuedc1, Mrps23, 1700106J16Rik, LOC668793, Msi2
Downstream geneAkap1, Scpep1, OTTMUSG00000001305, 2210409E12Rik, Coil, LOC100039051, Trim25, Dgke, A930013B10Rik, Gm525, LOC100039114, Nog, LOC100039047, 4932411E22Rik, Ankfn1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-315O18.bB6Ng01-315O18.g
ACCGA106445GA106446
length789961
definitionB6Ng01-315O18.b B6Ng01-315O18.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(88,667,322 - 88,668,109)(88,519,399 - 88,520,359)
sequence
gaattcatagtactgtgactgctggccaagtgttctgccactgatctata
tccacagcccttctctagggttttatctatgtaagaccacctcgtctgta
aaggcagagtcttgctttgccctcttcccttccactttgccctgatcaga
atgtctagttcagcagaaatggtgtattagttttctactaactatggtga
caagcaaggtaccatgaccgaggtgacttataaaagaaagcgttgagtta
ggcttatgatttcagaagattagagtctatgatggcaggatggagtcaaa
gcagcaggaacagctgagagctcccatcttgatctgcaaagcagtaggca
gagagcaagagcatctagaccgtcttttgaaacctcaaaagcaaccccag
cttctttgacacccctcctctgaggccacgcctcctcattcttcccatac
agttccactaactggggaccaagtattcaaatatgggggttaggactctc
attcaaaccaacacaggtggacttccttgtctgagtccccatctcagcaa
gatgctttcagtattttgccagcaagttttaggtaacaaactggttttct
tttaaaattacctttattaatgtattgtgtgtggtgtatgcctgtgggca
catgggtcatagcacgtacatcttgaggtcagaggacaacgttgtggagt
tggtcctctacaggtttgtgtggtaagttcctttacacacttcaccatct
caccagtacagagaacttcctttccttccttccttcctt
gaattctttatccaaggcttgcattttggaggtttctgatttcggacagg
caacaagatgtgtgcatcgtattctacagcacccacctccctgctctgcc
tgcttctactcaaagacattagaagtttttcagaaaaatccatgtaccct
catagtcagcaggatggagacgccatatagtctgaggacaggcaggtcag
attctgtagcccacggagttatagaaaagctgaggccgtgacacgctaga
cctgtagccacggggtaacacggaggcaggaactgtagaaagggggacta
ggcaagtaactagggtaagactaaggacaggctcagttaacacctgaaga
agaaacaagagcctcctgagagaaaggctctctctggcagaggctgcagc
agatgcaaaggagaaccttctagaacggcatcaaccataatggacaccca
agaggccatgcaaggcaacaagaaggctgacaaatgaggctagggtcaga
gtctggtgactgagaccatactaaaggacctccccttaaaactgtggctc
aaccagtactttaaaaaaagaatatgatagccgggtgtggtggcgcacgc
ctttagtcccagcactcgggaagcagaggcaggcggatttctgagttcga
ggccagcctggtctacaaagtgagttccaggacagtcagggctacacaga
gaaacactgtctcgaaaaaccaaaaaaaaaaaatatatatatatatgatt
atattgcttttttcagaaaagccctctgggcagccagtgggtccatgggc
aggaagagaggaagtatccagacagaagacctgtcactgggtcaggtcaa
agatgaagacaccaccaacttgggcagcaaagggataccactgaagggac
gtgcctcagactgggaggtgggtgtggcacagagacatcctcatcaaagt
ataatacaaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_88667322_88668109
seq2: B6Ng01-315O18.b_50_838 (reverse)

seq1  AAGGAAGGAAGGAAGG-AAGGAAGTTCTCTGTACTGGTGAGATGGTGAAG  49
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  AAGGAAGGAAGGAAGGAAAGGAAGTTCTCTGTACTGGTGAGATGGTGAAG  50

seq1  TGTGTAAAGGAACTTACCACACAAACCTGTAGAGGACCAACTCCACAACG  99
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTAAAGGAACTTACCACACAAACCTGTAGAGGACCAACTCCACAACG  100

seq1  TTGTCCTCTGACCTCAAGATGTACGTGCTATGACCCATGTGCCCACAGGC  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCCTCTGACCTCAAGATGTACGTGCTATGACCCATGTGCCCACAGGC  150

seq1  ATACACCACACACAATACATTAATAAAGGTAATTTTAAAAGAAAACCAGT  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACACCACACACAATACATTAATAAAGGTAATTTTAAAAGAAAACCAGT  200

seq1  TTGTTACCTAAAACTTGCTGGCAAAATACTGAAAGCATCTTGCTGAGATG  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTACCTAAAACTTGCTGGCAAAATACTGAAAGCATCTTGCTGAGATG  250

seq1  GGGACTCAGACAAGGAAGTCCACCTGTGTTGGTTTGAATGAGAGTCCTAA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGACTCAGACAAGGAAGTCCACCTGTGTTGGTTTGAATGAGAGTCCTAA  300

seq1  CCCCCATATTTGAATACTTGGTCCCCAGTTAGTGGAACTGTATGGGAAGA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCATATTTGAATACTTGGTCCCCAGTTAGTGGAACTGTATGGGAAGA  350

seq1  ATGAGGAGGCGTGGCCTCAGAGGAGGGGTGTCAAAGAAGCTGGGGTTGCT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGGAGGCGTGGCCTCAGAGGAGGGGTGTCAAAGAAGCTGGGGTTGCT  400

seq1  TTTGAGGTTTCAAAAGACGGTCTAGATGCTCTTGCTCTCTGCCTACTGCT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAGGTTTCAAAAGACGGTCTAGATGCTCTTGCTCTCTGCCTACTGCT  450

seq1  TTGCAGATCAAGATGGGAGCTCTCAGCTGTTCCTGCTGCTTTGACTCCAT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCAGATCAAGATGGGAGCTCTCAGCTGTTCCTGCTGCTTTGACTCCAT  500

seq1  CCTGCCATCATAGACTCTAATCTTCTGAAATCATAAGCCTAACTCAACGC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCCATCATAGACTCTAATCTTCTGAAATCATAAGCCTAACTCAACGC  550

seq1  TTTCTTTTATAAGTCACCTCGGTCATGGTACCTTGCTTGTCACCATAGTT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTTTATAAGTCACCTCGGTCATGGTACCTTGCTTGTCACCATAGTT  600

seq1  AGTAGAAAACTAATACACCATTTCTGCTGAACTAGACATTCTGATCAGGG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGAAAACTAATACACCATTTCTGCTGAACTAGACATTCTGATCAGGG  650

seq1  CAAAGTGGAAGGGAAGAGGGCAAAGCAAGACTCTGCCTTTACAGACGAGG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGTGGAAGGGAAGAGGGCAAAGCAAGACTCTGCCTTTACAGACGAGG  700

seq1  TGGTCTTACATAGATAAAACCCTAGAGAAGGGCTGTGGATATAGATCAGT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTCTTACATAGATAAAACCCTAGAGAAGGGCTGTGGATATAGATCAGT  750

seq1  GGCAGAACACTTGGCCAGCAGTCACAGTACTATGAATTC  788
      |||||||||||||||||||||||||||||||||||||||
seq2  GGCAGAACACTTGGCCAGCAGTCACAGTACTATGAATTC  789

seq1: chr11_88519399_88520359
seq2: B6Ng01-315O18.g_68_1028

seq1  GAATTCTTTATCCAAGGCTTGCATTTTGGAGGTTTCTGATTTCGGACAGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTATCCAAGGCTTGCATTTTGGAGGTTTCTGATTTCGGACAGG  50

seq1  CAACAAGATGTGTGCATCGTATTCTACAGCACCCACCTCCCTGCTCTGCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACAAGATGTGTGCATCGTATTCTACAGCACCCACCTCCCTGCTCTGCC  100

seq1  TGCTTCTACTCAAAGACATTAGAAGTTTTTCAGAAAAATCCATGTACCCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTCTACTCAAAGACATTAGAAGTTTTTCAGAAAAATCCATGTACCCT  150

seq1  CATAGTCAGCAGGATGGAGACGCCATATAGTCTGAGGACAGGCAGGTCAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGTCAGCAGGATGGAGACGCCATATAGTCTGAGGACAGGCAGGTCAG  200

seq1  ATTCTGTAGCCCACGGAGTTATAGAAAAGCTGAGGCCGTGACACGCTAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTGTAGCCCACGGAGTTATAGAAAAGCTGAGGCCGTGACACGCTAGA  250

seq1  CCTGTAGCCACGGGGTAACACGGAGGCAGGAACTGTAGAAAGGGGGACTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTAGCCACGGGGTAACACGGAGGCAGGAACTGTAGAAAGGGGGACTA  300

seq1  GGCAAGTAACTAGGGTAAGACTAAGGACAGGCTCAGTTAACACCTGAAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAAGTAACTAGGGTAAGACTAAGGACAGGCTCAGTTAACACCTGAAGA  350

seq1  AGAAACAAGAGCCTCCTGAGAGAAAGGCTCTCTCTGGCAGAGGCTGCAGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAACAAGAGCCTCCTGAGAGAAAGGCTCTCTCTGGCAGAGGCTGCAGC  400

seq1  AGATGCAAAGGAGAACCTTCTAGAACGGCATCAACCATAATGGACACCCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGCAAAGGAGAACCTTCTAGAACGGCATCAACCATAATGGACACCCA  450

seq1  AGAGGCCATGCAAGGCAACAAGAAGGCTGACAAATGAGGCTAGGGTCAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGCCATGCAAGGCAACAAGAAGGCTGACAAATGAGGCTAGGGTCAGA  500

seq1  GTCTGGTGACTGAGACCATACTAAAGGACCTCCCCTTAAAACTGTGGCTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGGTGACTGAGACCATACTAAAGGACCTCCCCTTAAAACTGTGGCTC  550

seq1  AACCAGTACTTTAAAAAAAGAATATGATAGCCGGGTGTGGTGGCGCACGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCAGTACTTTAAAAAAAGAATATGATAGCCGGGTGTGGTGGCGCACGC  600

seq1  CTTTAGTCCCAGCACTCGGGAAGCAGAGGCAGGCGGATTTCTGAGTTCGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAGTCCCAGCACTCGGGAAGCAGAGGCAGGCGGATTTCTGAGTTCGA  650

seq1  GGCCAGCCTGGTCTACAAAGTGAGTTCCAGGACAGTCAGGGCTACACAGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCAGCCTGGTCTACAAAGTGAGTTCCAGGACAGTCAGGGCTACACAGA  700

seq1  GAAACACTGTCTCGAAAAACC-AAAAAAAAAAATATATATATATATGATT  749
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  GAAACACTGTCTCGAAAAACCAAAAAAAAAAAATATATATATATATGATT  750

seq1  ATATTGC-TTTTTCAGAAAAGCCCTCTGGGCAGCCAGTGGGTCCATGGGC  798
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTGCTTTTTTCAGAAAAGCCCTCTGGGCAGCCAGTGGGTCCATGGGC  800

seq1  AGGAAGAGAGGAAGTATCCAGACAGAAGACCTGTCACT-GGTCAGGTCAA  847
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  AGGAAGAGAGGAAGTATCCAGACAGAAGACCTGTCACTGGGTCAGGTCAA  850

seq1  AGATGAAGACACCACCAACTTGGGCAGCAAAGGGATACCACTG-AGGGAC  896
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  AGATGAAGACACCACCAACTTGGGCAGCAAAGGGATACCACTGAAGGGAC  900

seq1  GGTGCCTCAGGACTGGGGAGGTGGGGTGTGGCACAGAGACATCCTCATCA  946
       |||||||| |||| ||||||| |||||||||||||||||||||||||||
seq2  -GTGCCTCA-GACT-GGGAGGT-GGGTGTGGCACAGAGACATCCTCATCA  946

seq1  AAGTATAATACAAGA  961
      |||||||||||||||
seq2  AAGTATAATACAAGA  961