BAC Information

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BAC

Clone NameB6Ng01-316G23
Chromosome11 (Build37)
Map Location 68,819,077 - 68,939,398
singlet/doubletdoublet
Overlap genePfas, 1500010J02Rik, Aurkb, 2310047M10Rik, Tmem107, Vamp2, Per1, Hes7
Upstream geneStx8, Ntn1, Pik3r5, BB220380, BC024997, Ccdc42, Myh10, Ndel1, 9930039A11Rik, Rpl26, Odf4, Arhgef15, Slc25a35, 2400006H24Rik
Downstream geneAloxe3, Alox12b, Alox8, Gucy2e, Cntrob, Trappc1, Kcnab3, A030009H04Rik, Chd3, Cyb5d1, Lsmd1, Tmem88, Jmjd3, Dnahc2, Efnb3, Wdr79, LOC100043030, Trp53, Atp1b2, Shbg, Sat2, LOC382532, Fxr2, Sox15, Mpdu1, Cd68, Eif4a1, Senp3, Tnfsf12-tnfsf13, Tnfsf13, Tnfsf12, LOC100041994, Polr2a, Amac1, Zbtb4, Chrnb1, Fgf11, Tmem102, 4933402P03Rik, 1700095G12Rik, Nlgn2, 1810027O10Rik, Plscr3, Tnk1, LOC432576, Kctd11, Centb1, 2810408A11Rik, 0610025P10Rik, Gps2, Eif5a, Ybx2, Slc2a4, LOC668442, Cldn7, Rai12, Dullard, Gabarap, Phf23, Dvl2, Acadvl, Dlg4, Asgr1, Asgr2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-316G23.bB6Ng01-316G23.g
ACCGA106833GA106834
length1,1481,198
definitionB6Ng01-316G23.b B6Ng01-316G23.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(68,938,234 - 68,939,398)(68,819,077 - 68,820,268)
sequence
gaattcctacatgtgaatcacccacgtgaatcacaccgtgcatcggaaag
ctgcaccaattcataaatgccaggtgacctcatcaacaatcaagtgaata
acacacatcttagcacgtgacaaggccatcatgttctccttcctgccacc
gacccacccatctcctcctaaagtctagtcttctctctgtctccagtttt
tgttattcccgacctcaatcactcctttgagataggacctgcctgccaag
tgagtggaagcctgcccgacagcatctggaggccctcatgtgacattctt
tacgctccaggtcctccctcagccagcctgctgaaccgtgggaggcaccc
tgtatgccctaggtgtccaagatataggtcacaaggaccagggaagaaaa
aaaatagactctaccggggaaacctgtggcccgcagcggccccgcgtggc
tggtctaggcacctctagattcctgcttgagtggcgctcctgccctcctt
aacttctaataaaagccgaggcgttagcgactaggtttcagtaagtcaga
gtctcggacaaaaacgaacttcatcctttaaatacacacaagaatacgta
ggtatcataataaattcatttaggcaaaagtggagagctttgctaagagc
ccggatagctcagtcggtagagcatcagacttttaatctgagggtccagg
gttcaagtccctgttcgggcgcttagctttttgtgggaatctgcacttac
aaacactattgttaggctgtcttgtttgacaatagctctataataacaaa
gtaattgcattctttttaaaaggaaatgtaaattgaacgtaagttccgaa
caatcagaagagggaacagcattacgttaaagtactagctatacaaacga
ggaatacatcaaagagagtaaaaagaaaatggggagttaatatattatat
taatatatacttcatttactacaatatttgaaatcttattttaccctaat
ggtgttttaaatccgcattttaacgaattttaatatcttccttaatttca
tgtttagagaaagcacctcatatttcaggtactcaatattccacattaag
tagtggcttcatgtgtttgtttgctgttggataaatggagggatatgc
gaattcaaggcaagcctggtcaattcagtgagctccagaccagccaaggc
tacacagtatgtacacacacacacacacacacacacacacacacacacac
acacacaaattactccacaggccagtgggatggttcagcaggtagacact
tgccaccaaacttagtgatctgagtttgattcccagaacccacttaatgg
aaagaagaaagctaactttcacagattgttctctgtcttcaagtgtttgg
gaagctcagatacaggcgaatacttagtgtgctaaggtgatgggcctgat
aaaaaacttttaaaacaaaactgaattcttttggtatcccatccaagacc
agtattgtgcagctgtcaatccagaggctacttaactgttcttataagcc
ctctcagcagcacgagattcaattaattttctacgtcttcaccctcctct
cgtggctctaagcacaccatcatcctcctgaaggtctttccctggctgat
cccgagtcatccgagcttacccagcttctaactgttaggtatccagggtt
ctgtccttatttctctccctttgtagtaagtggtttcagctagtcctgtg
ctttaaagtctacgtagtaaaaccaaccaatgaaatcgccacattcatct
gttaatttaaaataatttgatagcattcaaactaatgtttgccaaaaata
ttctataacttttcccaacagtgaatctctaaaactccagattggtatat
ttaaataccatcccacctacatataagggtgtcataaatatagccaacaa
gggctgaatatttaacgcaaatatttgtccagtatccatgaagccccggg
ctggtttgattcccaggaccatataaactgggcaagtggcacatatgcct
gtaatcccagaacatggaaacgtggaggcagggggatcctaagctcaatg
ccattcccagctacaccagtgagtttgagaccagccaggacttatttatt
tttttttaaagatgtatttatatatttttttatgtgagtacacctgtagc
tgtcttcaaacccccccagagagggtatctgatctcattacgaatgctgt
gaagccaccatgtgttgctggaattggactcaggaactctggaaagacag
tcaatgctcttagcactggagccatcttctccaggcgctcacacagcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_68938234_68939398
seq2: B6Ng01-316G23.b_49_1196 (reverse)

seq1  GCATATCACTCCATTTATTCAAACAAACCAAAACAAACACATGAAGCCAA  50
      ||||||| ||||||||| || ||||     |||||||||||||||||| |
seq2  GCATATCCCTCCATTTA-TCCAACA---GCAAACAAACACATGAAGCC-A  45

seq1  CTACTAAAATGT-GATTATTGAGTACCTGAAATATGA-GTGCTTTCTTCT  98
      |||||  ||||| || ||||||||||||||||||||| |||||||| |||
seq2  CTACT-TAATGTGGAATATTGAGTACCTGAAATATGAGGTGCTTTC-TCT  93

seq1  AAACATGAAAATTAAGGAAGATAATTTAAAAATTCGTTAAAATGCGGATT  148
      ||||||| |||||||||||||||   | |||||||||||||||||||| |
seq2  AAACATG-AAATTAAGGAAGATA---TTAAAATTCGTTAAAATGCGGA-T  138

seq1  TTAAAACACCAATTAGGGTTAAAATAAGATTTTCAAATATTGTAGTAAAT  198
      |||||||||| ||||||| |||||||||| ||||||||||||||||||||
seq2  TTAAAACACC-ATTAGGG-TAAAATAAGA-TTTCAAATATTGTAGTAAAT  185

seq1  GAAGTATATTATTAATATTAATAATATTAACTTCCCCATTTTCTTTTTAC  248
      |||||||| |||||||| |||| |||||||| ||||||||||||||||||
seq2  GAAGTATA-TATTAATA-TAAT-ATATTAAC-TCCCCATTTTCTTTTTAC  231

seq1  TCTCTTTGATGTATTCCTCGTTTGTATAGCTAGTACTTTAACGTAATGCT  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTTTGATGTATTCCTCGTTTGTATAGCTAGTACTTTAACGTAATGCT  281

seq1  GTTCCCTCTTCTGATTGTTCGGAACTTACGTTCAATTTACATTTCCTTTT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCCCTCTTCTGATTGTTCGGAACTTACGTTCAATTTACATTTCCTTTT  331

seq1  AAAAAGAATGCAATTACTTTGTTATTATAGAGCTATTGTCAAACAAGACA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAGAATGCAATTACTTTGTTATTATAGAGCTATTGTCAAACAAGACA  381

seq1  GCCTAACAATAGTGTTTGTAAGTGCAGATTCCCACAAAAAGCTAAGCGCC  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTAACAATAGTGTTTGTAAGTGCAGATTCCCACAAAAAGCTAAGCGCC  431

seq1  CGAACAGGGACTTGAACCCTGGACCCTCAGATTAAAAGTCTGATGCTCTA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAACAGGGACTTGAACCCTGGACCCTCAGATTAAAAGTCTGATGCTCTA  481

seq1  CCGACTGAGCTATCCGGGCTCTTAGCAAAGCTCTCCACTTTTGCCTAAAT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGACTGAGCTATCCGGGCTCTTAGCAAAGCTCTCCACTTTTGCCTAAAT  531

seq1  GAATTTATTATGATACCTACGTATTCTTGTGTGTATTTAAAGGATGAAGT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTTATTATGATACCTACGTATTCTTGTGTGTATTTAAAGGATGAAGT  581

seq1  TCGTTTTTGTCCGAGACTCTGACTTACTGAAACCTAGTCGCTAACGCCTC  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGTTTTTGTCCGAGACTCTGACTTACTGAAACCTAGTCGCTAACGCCTC  631

seq1  GGCTTTTATTAGAAGTTAAGGAGGGCAGGAGCGCCACTCAAGCAGGAATC  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTTTATTAGAAGTTAAGGAGGGCAGGAGCGCCACTCAAGCAGGAATC  681

seq1  TAGAGGTGCCTAGACCAGCCACGCGGGGCCGCTGCGGGCCACAGGTTTCC  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGGTGCCTAGACCAGCCACGCGGGGCCGCTGCGGGCCACAGGTTTCC  731

seq1  CCGGTAGAGTCTATTTTTTTTCTTCCCTGGTCCTTGTGACCTATATCTTG  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGGTAGAGTCTATTTTTTTTCTTCCCTGGTCCTTGTGACCTATATCTTG  781

seq1  GACACCTAGGGCATACAGGGTGCCTCCCACGGTTCAGCAGGCTGGCTGAG  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACCTAGGGCATACAGGGTGCCTCCCACGGTTCAGCAGGCTGGCTGAG  831

seq1  GGAGGACCTGGAGCGTAAAGAATGTCACATGAGGGCCTCCAGATGCTGTC  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGACCTGGAGCGTAAAGAATGTCACATGAGGGCCTCCAGATGCTGTC  881

seq1  GGGCAGGCTTCCACTCACTTGGCAGGCAGGTCCTATCTCAAAGGAGTGAT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCAGGCTTCCACTCACTTGGCAGGCAGGTCCTATCTCAAAGGAGTGAT  931

seq1  TGAGGTCGGGAATAACAAAAACTGGAGACAGAGAGAAGACTAGACTTTAG  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGTCGGGAATAACAAAAACTGGAGACAGAGAGAAGACTAGACTTTAG  981

seq1  GAGGAGATGGGTGGGTCGGTGGCAGGAAGGAGAACATGATGGCCTTGTCA  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAGATGGGTGGGTCGGTGGCAGGAAGGAGAACATGATGGCCTTGTCA  1031

seq1  CGTGCTAAGATGTGTGTTATTCACTTGATTGTTGATGAGGTCACCTGGCA  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGCTAAGATGTGTGTTATTCACTTGATTGTTGATGAGGTCACCTGGCA  1081

seq1  TTTATGAATTGGTGCAGCTTTCCGATGCACGGTGTGATTCACGTGGGTGA  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATGAATTGGTGCAGCTTTCCGATGCACGGTGTGATTCACGTGGGTGA  1131

seq1  TTCACATGTAGGAATTC  1165
      |||||||||||||||||
seq2  TTCACATGTAGGAATTC  1148

seq1: chr11_68819077_68820268
seq2: B6Ng01-316G23.g_68_1265

seq1  GAATTCAAGGCAAGCCTGGTCAATTCAGTGAGCTCCAGACCAGCCAAGGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAGGCAAGCCTGGTCAATTCAGTGAGCTCCAGACCAGCCAAGGC  50

seq1  TACACAGTATGTACACACACACACACACACACACACACACACACACACAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACAGTATGTACACACACACACACACACACACACACACACACACACAC  100

seq1  ACACACAAATTACTCCACAGGCCAGTGGGATGGTTCAGCAGGTAGACACT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACAAATTACTCCACAGGCCAGTGGGATGGTTCAGCAGGTAGACACT  150

seq1  TGCCACCAAACTTAGTGATCTGAGTTTGATTCCCAGAACCCACTTAATGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCACCAAACTTAGTGATCTGAGTTTGATTCCCAGAACCCACTTAATGG  200

seq1  AAAGAAGAAAGCTAACTTTCACAGATTGTTCTCTGTCTTCAAGTGTTTGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAAGAAAGCTAACTTTCACAGATTGTTCTCTGTCTTCAAGTGTTTGG  250

seq1  GAAGCTCAGATACAGGCGAATACTTAGTGTGCTAAGGTGATGGGCCTGAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCTCAGATACAGGCGAATACTTAGTGTGCTAAGGTGATGGGCCTGAT  300

seq1  AAAAAACTTTTAAAACAAAACTGAATTCTTTTGGTATCCCATCCAAGACC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAACTTTTAAAACAAAACTGAATTCTTTTGGTATCCCATCCAAGACC  350

seq1  AGTATTGTGCAGCTGTCAATCCAGAGGCTACTTAACTGTTCTTATAAGCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATTGTGCAGCTGTCAATCCAGAGGCTACTTAACTGTTCTTATAAGCC  400

seq1  CTCTCAGCAGCACGAGATTCAATTAATTTTCTACGTCTTCACCCTCCTCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCAGCAGCACGAGATTCAATTAATTTTCTACGTCTTCACCCTCCTCT  450

seq1  CGTGGCTCTAAGCACACCATCATCCTCCTGAAGGTCTTTCCCTGGCTGAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGGCTCTAAGCACACCATCATCCTCCTGAAGGTCTTTCCCTGGCTGAT  500

seq1  CCCGAGTCATCCGAGCTTACCCAGCTTCTAACTGTTAGGTATCCAGGGTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCGAGTCATCCGAGCTTACCCAGCTTCTAACTGTTAGGTATCCAGGGTT  550

seq1  CTGTCCTTATTTCTCTCCCTTTGTAGTAAGTGGTTTCAGCTAGTCCTGTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCCTTATTTCTCTCCCTTTGTAGTAAGTGGTTTCAGCTAGTCCTGTG  600

seq1  CTTTAAAGTCTACGTAGTAAAACCAACCAATGAAATCGCCACATTCATCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAAAGTCTACGTAGTAAAACCAACCAATGAAATCGCCACATTCATCT  650

seq1  GTTAATTTAAAATAATTTGATAGCATTCAAACTAATGTTTGCCAAAAATA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAATTTAAAATAATTTGATAGCATTCAAACTAATGTTTGCCAAAAATA  700

seq1  TTCTATAACTTTTCCCAACAGTGAATCTCTAAAACTCCAGATTGGTATAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTATAACTTTTCCCAACAGTGAATCTCTAAAACTCCAGATTGGTATAT  750

seq1  TTAAATACCATCCCACCTACATATAAGGGTGTCATAAATATAGCCAACAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAATACCATCCCACCTACATATAAGGGTGTCATAAATATAGCCAACAA  800

seq1  GGGCTGAATATTTAACGCAAAATATTTGTCCAGTATCCATGAAGCCCCGG  850
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  GGGCTGAATATTTAACGC-AAATATTTGTCCAGTATCCATGAAGCCCCGG  849

seq1  GCTGGTTTGATTCCCAGGACCATATAAACTGGGCAAAGTGGCACATATGC  900
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  GCTGGTTTGATTCCCAGGACCATATAAACTGGGC-AAGTGGCACATATGC  898

seq1  CTGTAATCCCAGAACATGG-AACGTGGAGGCAGGGGGATCCTAAGCTCAA  949
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  CTGTAATCCCAGAACATGGAAACGTGGAGGCAGGGGGATCCTAAGCTCAA  948

seq1  TGCCATTCCCAGCTACA-CAGTGAGTTTGAGACCAGCCAAGACTTATT--  996
      ||||||||||||||||| ||||||||||||||||||||| ||||||||  
seq2  TGCCATTCCCAGCTACACCAGTGAGTTTGAGACCAGCCAGGACTTATTTA  998

seq1  ATTTTTTTTAAAGATGTATTTATATA-TTTTTTATGTGAGTACA-CTGTA  1044
       ||||||||||||||||||||||||| ||||||||||||||||| |||||
seq2  TTTTTTTTTAAAGATGTATTTATATATTTTTTTATGTGAGTACACCTGTA  1048

seq1  GCTGTCTTCAGACACCCCAGAAGAAGGTATCTGATCTCATTACAGATGGC  1094
      |||||||||| || ||||   ||| |||||||||||||||||| ||  ||
seq2  GCTGTCTTCAAACCCCCCCAGAGAGGGTATCTGATCTCATTAC-GAATGC  1097

seq1  TGTG-AGCCACCATGTGGTTGCTGGGAATTGAACTCAGGACTTCTGGAAG  1143
      |||| ||||||||||| |||||| ||||||| ||||||||  ||||||| 
seq2  TGTGAAGCCACCATGT-GTTGCT-GGAATTGGACTCAGGAACTCTGGAAA  1145

seq1  AGCAGTCAGTGCTCTTAACCACT-GAACCATC-TCTCCA---GCCCCCAC  1188
        |||||| ||||||| | |||| || ||||| ||||||   || | |||
seq2  GACAGTCAATGCTCTT-AGCACTGGAGCCATCTTCTCCAGGCGCTCACAC  1194

seq1  AGCC  1192
      ||||
seq2  AGCC  1198