BAC Information

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BAC

Clone NameB6Ng01-317E20
Chromosome1 (Build37)11 (Build37)
Map Location 173,035,281 - 173,036,319119,615,508 - 119,615,547
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneDdr2, Uap1, Uhmk1, Sh2d1b2, EG622708, Sh2d1b1, EG665574, 1700015E13Rik, Nos1ap, LOC100040002, LOC640532, Olfml2b, Atf6, Dusp12, Fcrlb, Fcrla, LOC100040778, Fcgr2b, Fcgr4, Fcgr3
Downstream gene1700009P17Rik, Sdhc, Mpz, Pcp4l1, Nr1i3, Tomm40l, Apoa2, Fcer1g, Ndufs2, Adamts4, B4galt3, Ppox, Usp21, Ufc1, EG622236, Dedd, Nit1, Pfdn2, 1190002J23Rik, Pvrl4, Arhgap30, Usf1, EG226654, F11r, Refbp2, Itlna, Cd244, Ly9, Slamf7, Cd48, LOC100041098, Slamf1, Cd84, Slamf6, Vangl2, LOC100040199, Nhlh1, Ncstn, Copa
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-317E20.bB6Ng01-317E20.g
ACCGA107481GA107482
length1,046122
definitionB6Ng01-317E20.b B6Ng01-317E20.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(173,035,281 - 173,036,319)(119,615,508 - 119,615,547)
sequence
gaattccacacagtacattttaataatattcacccccacttttcttggtt
ccaccctcccaccttgtctccccccccaccccctccaattttgtttttgg
acatacctgggcccaaattcgtgctgcccgtacatttctgggtgtgggac
tctttattggaacctggtcaacccagccttgaagaaaactgactctccct
ccctgtaacgttcccagccttgagcaggctaagcagaccttgaacatctg
acctggacagaggcatctgccttgccagcagttgcaggttcccatgggat
cttagctgttttggctgcctgcgctgaccttgctctgcaacacactccat
ctgaaacaggagtggattttgtggggtttccctttataaactttgatcag
aaccttgctctggcttcattcttctctcgccccccccctccgccctttca
tttccagcctcccattcaggtgaaccctaattgccttttagtcgccggac
tggatggccacacctcccaataggctctgtaacagcagtctttttttttt
tccattaaggcttttttttttctttaatttcctcatttacatttccaatg
ctattccaaaagtcccccataccctccccccccactcccctacccgccca
ctccccctttttggctctggcgttcccctgtactggggcatataaagttt
gcaagtccaatgggcctctcttttccagtgatggccgactaggccacctt
ttgatacatatgcagctagagacaagagctccggggtactggttagttca
taatgttgtttccacctatagggttgaacagcagtctttttaaaccgtgc
cccatgctgtaagctagggctcgttccccaactagcttgtaatttaattc
tctctctctctctctctctcagatcccaccttctatttgcagccttttcg
ctattaggccatcagcttgtattggcagtgatgctcccaccagtgcacaa
gattagcttcagttagagtgagacttgcaaggtcaactatctttag
aataatcacaattgcagagatttttctaggaaaaaaaaacaactatcact
ttatttgccttaaaactaagaagctgcagactctttgtttgtttggtttt
gtttttgtgtttttgtgttttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_173035281_173036319
seq2: B6Ng01-317E20.b_65_1096

seq1  ACATTTTAATAATATTCACCCCCACTTTTCTTGGTTCCACCCTCCCACCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTTTAATAATATTCACCCCCACTTTTCTTGGTTCCACCCTCCCACCT  50

seq1  TGTCTCCCCCCCCACCCCCTCCAATTTTGTTTTTGGACATACCTGGGCCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTCCCCCCCCACCCCCTCCAATTTTGTTTTTGGACATACCTGGGCCC  100

seq1  AAATTCGTGCTGCCCGTACATTTCTGGGTGTGGGACTCTTTATTGGAACC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTCGTGCTGCCCGTACATTTCTGGGTGTGGGACTCTTTATTGGAACC  150

seq1  TGGTCAACCCAGCCTTGAAGAAAACTGACTCTCCCTCCCTGTAACGTTCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTCAACCCAGCCTTGAAGAAAACTGACTCTCCCTCCCTGTAACGTTCC  200

seq1  CAGCCTTGAGCAGGCTAAGCAGACCTTGAACATCTGACCTGGACAGAGGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCTTGAGCAGGCTAAGCAGACCTTGAACATCTGACCTGGACAGAGGC  250

seq1  ATCTGCCTTGCCAGCAGTTGCAGGTTCCCATGGGATCTTAGCTGTTTTGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGCCTTGCCAGCAGTTGCAGGTTCCCATGGGATCTTAGCTGTTTTGG  300

seq1  CTGCCTGCGCTGACCTTGCTCTGCAACACACTCCATCTGAAACAGGAGTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCTGCGCTGACCTTGCTCTGCAACACACTCCATCTGAAACAGGAGTG  350

seq1  GATTTTGTGGGGTTTCCCTTTATAAACTTTGATCAGAACCTTGCTCTGGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTTGTGGGGTTTCCCTTTATAAACTTTGATCAGAACCTTGCTCTGGC  400

seq1  TTCATTCTTCTCTCGCCCCCCCCCTCCGCCCTTTCATTTCCAGCCTCCCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATTCTTCTCTCGCCCCCCCCCTCCGCCCTTTCATTTCCAGCCTCCCA  450

seq1  TTCAGGTGAACCCTAATTGCCTTTTAGTCGCCGGACTGGATGGCCACACC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGGTGAACCCTAATTGCCTTTTAGTCGCCGGACTGGATGGCCACACC  500

seq1  TCCCAATAGGCTCTGTAACAGCAGTCTTTTTTTTTTTCCATTAAGGCTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAATAGGCTCTGTAACAGCAGTCTTTTTTTTTTTCCATTAAGGCTTT  550

seq1  TTTTTTTCTTTAATTTCCTCATTTACATTTCCAATGCTATTCCAAAAGTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTCTTTAATTTCCTCATTTACATTTCCAATGCTATTCCAAAAGTC  600

seq1  CCCCATACCCTCCCCCCCCACTCCCCTACCCGCCCACTCCCCCTTTTTGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCATACCCTCCCCCCCCACTCCCCTACCCGCCCACTCCCCCTTTTTGG  650

seq1  CTCTGGCGTTCCCCTGTACTGGGGCATATAAAGTTTGCAAGTCCAATGGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGGCGTTCCCCTGTACTGGGGCATATAAAGTTTGCAAGTCCAATGGG  700

seq1  CCTCTC-TTTCCAGTGATGGCCGACTAGGCCACCTTTTGATACATATGCA  749
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTCTTTTCCAGTGATGGCCGACTAGGCCACCTTTTGATACATATGCA  750

seq1  GCTAGAGACAAGAGCTCCGGGGTACTGGTTAGTTCATAATGTTG-TTCCA  798
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  GCTAGAGACAAGAGCTCCGGGGTACTGGTTAGTTCATAATGTTGTTTCCA  800

seq1  CCTATAGGGTTGAACAGCAGTCTTTTTAAACCGTGCCCCAGGCTGTAAGC  848
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  CCTATAGGGTTGAACAGCAGTCTTTTTAAACCGTGCCCCATGCTGTAAGC  850

seq1  TAGGGCTCGTTCCCCAACTAGCTTGTAATTT-ATTCTCTCTCTCTCTCTC  897
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  TAGGGCTCGTTCCCCAACTAGCTTGTAATTTAATTCTCTCTCTCTCTCTC  900

seq1  TCTCTCAGAATCCCACCTTCTATTTGCAGCC-TTTCGCTAATAGGCCATC  946
      |||||||| |||||||||||||||||||||| |||||||| |||||||||
seq2  TCTCTCAG-ATCCCACCTTCTATTTGCAGCCTTTTCGCTATTAGGCCATC  949

seq1  AGCTTGTTATTGGCAGGTGATGCTTCCACACAGTGCACAGAGATTAGCTT  996
      |||||| |||||||| |||||||| |||| ||||||||| ||||||||||
seq2  AGCTTG-TATTGGCA-GTGATGCTCCCAC-CAGTGCACA-AGATTAGCTT  995

seq1  CGTGGTTAGAGGTGAGGACTTGCAAGGTGAACATAATCTTTAG  1039
      |   |||||| |||| |||||||||||| |||   ||||||||
seq2  C--AGTTAGA-GTGA-GACTTGCAAGGTCAAC--TATCTTTAG  1032

seq1: chr11_119615508_119615547
seq2: B6Ng01-317E20.g_153_194

seq1  CTCTTTGTTTGTTTGGTTTTGTTTTT-TGTTTTT-TGTTTTT  40
      |||||||||||||||||||||||||| ||||||| |||||||
seq2  CTCTTTGTTTGTTTGGTTTTGTTTTTGTGTTTTTGTGTTTTT  42