BAC Information

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BAC

Clone NameB6Ng01-317K07
Chromosome11 (Build37)9 (Build37)
Map Location 115,057,115 - 115,057,20467,365,553 - 67,365,913
singlet/doubletsingletsinglet
Overlap geneTmem104
Upstream geneLOC634710, 4932435O22Rik, Rpl38, Ttyh2, Dnaic2, Kif19a, 1500005I02Rik, Gpr142, Gprc5c, Cd300a, Cd300lb, Cd300c, 4732429D16Rik, Cd300d, LOC629970, LOC100043123, LOC100043125, Clm3, Cd300e, Cd300lf, Rab37, Slc9a3r1, Nat9
Downstream geneGrin2c, Fdxr, Fads6, Otop2, Ush1g, Otop3, C630004H02Rik, Cdr2l, Ict1, Atp5h, Kctd2, 4933422H20Rik, Slc16a5, Armc7, Nt5c, Hn1, Sumo2, Nup85, Gga3, Mrps7, Mif4gd, Slc25a19, Grb2, LOC100043184, 2310067B10Rik, Caskin2, Tsen54, Llgl2, Recql5, 2210020M01Rik, Sap30bp, Itgb4, Galk1, H3f3b, Unk, Unc13d, Wbp2, Trim47, Trim65, Mrpl38, Fbf1, Acox1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-317K07.bB6Ng01-317K07.g
ACCGA107736GA107737
length120361
definitionB6Ng01-317K07.b B6Ng01-317K07.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(115,057,115 - 115,057,204)(67,365,553 - 67,365,913)
sequence
caggacagccagagctgtgtattagagaacacttgtctcaaaaagaccag
atgaaagaggaggaaataagaggaggagaagaaagagaaggaagaagaag
aggaagaggaggaggaagag
ttcatgtagaacaacacaaaactccaaaaatccacataaaacagaaagga
gggacccaagccttctgcagagtggagggcagagcgctctgggggcgaca
gccctgccaataaaaccgggtgttgcccaatcctcaatcaagaaaggatt
tcacacaggctgaaacacaaaggcaggaagagactccactcagacaagtt
tccataaccttgaaattcacatcttcatcttcaaaaggagatagttgtat
cagatcacctgaggtgtcactctcaaatgagctgcatttgagaatttctc
cttaaaatcaggaccacgtcaccctagggctctccctctctgcccaggat
ctgtgtgtgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_115057115_115057204
seq2: B6Ng01-317K07.b_106_169 (reverse)

seq1  CTCTTCCTCCTCCTCTTCTCCCTCCTCCTCCTCCTCTTCTCCCTCCTCCT  50
                  |||||   |||||||||| ||||||||| | |||| ||
seq2  ------------CTCTT---CCTCCTCCTCTTCCTCTTCTTCTTCCTTCT  35

seq1  CCTCCTCTTCCTCCTCCTCTTCTCCCTCCTCCTCCTCCTC  90
      | |  |||| ||||||||||| |         ||||||||
seq2  CTT--TCTT-CTCCTCCTCTTAT--------TTCCTCCTC  64

seq1: chr9_67365553_67365913
seq2: B6Ng01-317K07.g_73_433

seq1  TTCATGTAGAACAACACAAAACTCCAAAAATCCACATAAAACAGAAAGGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATGTAGAACAACACAAAACTCCAAAAATCCACATAAAACAGAAAGGA  50

seq1  GGGACCCAAGCCTTCTGCAGAGTGGAGGGCAGAGCGCTCTGGGGGCGACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGACCCAAGCCTTCTGCAGAGTGGAGGGCAGAGCGCTCTGGGGGCGACA  100

seq1  GCCCTGCCAATAAAACCGGGTGTTGCCCAATCCTCAATCAAGAAAGGATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTGCCAATAAAACCGGGTGTTGCCCAATCCTCAATCAAGAAAGGATT  150

seq1  TCACACAGGCTGAAACACAAAGGCAGGAAGAGACTCCACTCAGACAAGTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACACAGGCTGAAACACAAAGGCAGGAAGAGACTCCACTCAGACAAGTT  200

seq1  TCCATAACCTTGAAATTCACATCTTCATCTTCAAAAGGAGATAGTTGTAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATAACCTTGAAATTCACATCTTCATCTTCAAAAGGAGATAGTTGTAT  250

seq1  CAGATCACCTGAGGTGTCACTCTCAAATGAGCTGCATTTGAGAATTTCTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATCACCTGAGGTGTCACTCTCAAATGAGCTGCATTTGAGAATTTCTC  300

seq1  CTTAAAATCAGGACCACGTCACCCTAGGGCTCTCCCTCTCTGCCCAGGAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAAAATCAGGACCACGTCACCCTAGGGCTCTCCCTCTCTGCCCAGGAT  350

seq1  CTGTGTGTGTG  361
      |||||||||||
seq2  CTGTGTGTGTG  361