BAC Information

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BAC

Clone NameB6Ng01-317O09
Chromosome11 (Build37)
Map Location 3,670,207 - 3,773,993
singlet/doubletdoublet
Overlap geneOsbp2, LOC664920
Upstream geneLOC236604, Sfi1, LOC623257, Eif4enif1, Drg1, Patz1, Pik3ip1, Limk2, Rnf185, 8430429K09Rik, LOC100041573, Pla2g3, Pib5pa, Selm, Smtn, Map1lc3-5, LOC625608, Tug1, Morc2a, LOC664900
Downstream gene4921536K21Rik, Dusp18, Slc35e4, Tcn2, LOC100041720, Pes1, Gal3st1, Sec14l4, Sec14l3, 1700020C11Rik, Sec14l2, LOC625729, Rnf215, 4930562D19Rik, Sf3a1, Tbc1d10a, 2410008K03Rik, LOC625760, Osm, Lif, Hormad2, Mtmr3, LOC100041006, OTTMUSG00000005065, Ascc2, 1110020P15Rik, Zmat5, Cabp7, Nf2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-317O09.bB6Ng01-317O09.g
ACCGA107925GA107926
length1,199954
definitionB6Ng01-317O09.b B6Ng01-317O09.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(3,772,800 - 3,773,993)(3,670,207 - 3,671,161)
sequence
gaattcctcagaaatagtcatcagaatgacacattaattatcatccaggt
tttgaatatgtttctactgtgaaatttcttctttgtcagtgaatgctttt
ctgggctcatttctttgaagggctggtgagccgtctgcacattcaattcc
agagccaaagctgacaatggttaatttgctttcaccttccttttggcttc
tttatgtttcttccaacattccaaaaggagactatctgttcaggcttccc
aagaatttctgctaatactatctcccacaccactccagaataagttagga
ccacgaaatctgtcgtcattctcagagaaaaggaaaaacctaatggtctc
gttctcaggagccgctctccagggctgccttcccacgtttcactagtttg
attctataggtggcatccttttcatctttagtggctgaatcaaaaaaaaa
aaaaaaaaaaaaagggaatgtaaagccactggtctgctcaggcccacgtg
ccagtgtcacggcctcctgattttcccagtcccctctctagcaccagcct
cagtcctgggcgcatcttcttccttttcatctgtgttgctcatactttgg
aatatttctttcaaaatctgtagcaatgttataatacatgtcttgggata
cctcaggccgcttctctgcttcttcctttttcttcttccatttggcctta
ctttctttttctttatcttcttgttttctttcataaatggcatggtcatg
ctttgttgggtcataatatacgatatcctttaaatttcttagcagccact
gctcctttgtagagttgttcacattgatactcaaaacactttgcacagca
ttcagggttttcctttttttttctgcagcaagctcatcttcgttcacttt
attttcatttagctctttctgtttgtcctcactgtcattctctaaaaatc
tagagtccatgtggaatctctcatcacttccaaaccggagactgcagatc
tgtacgcttctgggccagctcttgcctaaagggggcttcattacctttgg
ttagggctcatttttttaggtttggagaatgaactttgctaatgcaggct
ctggtgggggtagtacttatttagcttagcaggccggcaaaaacctttac
aacaaattctgcctagctcagtgctaggagaattacaggcacaggccac
gaattccttggcttgtgacatcattctacccctgccttgcttttcccatt
ctatgtctttatatagtgtccttgtgtatgtgtgtgtactgtccatgccc
atgtttgcatgtgtatgcctgtgtatatgtgtgtgtatgtgcctgagtgt
gcctttgtagactgccctcctgtgtgtgcatatgtgttggatgcatattc
atgtatgttcttgtatagtgtccttgcatatgcatgtgaatgtatgtgtc
catgcatgtacaatgtgtgtaagtgcctatgtgtgtccctatacaatgtt
ttcatgtgtgtgcacgtgtattctgtgcctgtgtatgtgtgcatgcacac
acatgtgtgtgtttctgtcaagctgcgataggaacctgaatgactttgcc
ataaagattacatctgcagagacctatttttcccaaataaggtcacacta
acaacaagtacagggcgttaggacataatgcagaccataggactggtacc
taatgctgcacttgatacacagggtgagactcttgttcttgtgactagcc
agccaagaaagagtgatgaggtcagagcagggaggaaagtgtgctgaaga
cagctggttggatctggaggagtgcaggcaggattggccgcacttaaatc
ctgcctaggcatagagagcacagtgcactcctttgcagtgtgggctccaa
agttgacttgcagaaaggccttcccagagccaggagctagcaggggaagg
ctcttcaggaaagcagtggcaagagcagaatttgtccctgaaacacacaa
aggcacagctctgaggaatcccaggcgggaaagtggccagatgcaaaaat
gtcaccctcggtagggaacttaatcaggatgaaactgcatagcctgaggg
aacgagtgtaacccaaagaaaatgtgacaggaaaagggacagggccggct
gcag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_3772800_3773993
seq2: B6Ng01-317O09.b_48_1246 (reverse)

seq1  GTGGCCTGTGCCTGTA---CTCCTAGCACTTTGGAGGCTGAGGCAGGAAT  47
      ||||||||||||||||   |||||||||||   || ||| ||||| ||||
seq2  GTGGCCTGTGCCTGTAATTCTCCTAGCACT---GA-GCT-AGGCA-GAAT  44

seq1  ATTGTTGT-AAGTTTTTTGCCAGCCTTGGCT-AGCTAAAT-AGTACTACA  94
       ||||||| ||| |||||||| ||||  ||| |||||||| |||||||| 
seq2  -TTGTTGTAAAGGTTTTTGCCGGCCT--GCTAAGCTAAATAAGTACTACC  91

seq1  CCAACAAGAG-CTGCA-TAGCAAAATTCA-TCTCAAAACCTAAAAAAAAT  141
      || || |||| ||||| ||||||| |||| |||| |||||| ||||||||
seq2  CCCACCAGAGCCTGCATTAGCAAAGTTCATTCTCCAAACCT-AAAAAAAT  140

seq1  GAGCCCTAA-CAAAGGTAATGAAGCCCCCTTTAGGC-AGAGCTGG-CCAG  188
      ||||||||| |||||||||||||||||||||||||| |||||||| ||||
seq2  GAGCCCTAACCAAAGGTAATGAAGCCCCCTTTAGGCAAGAGCTGGCCCAG  190

seq1  AAGCGTACAGATCTGCAGTCT-CGGTTTGGAAGTGATGAGAGATTCCACA  237
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  AAGCGTACAGATCTGCAGTCTCCGGTTTGGAAGTGATGAGAGATTCCACA  240

seq1  TGGACTCTAGATTTTTAGAGAATGACAGTGAGGACAAACAGAAAGAGCTA  287
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGACTCTAGATTTTTAGAGAATGACAGTGAGGACAAACAGAAAGAGCTA  290

seq1  AATGAAAATAAAGTGAACGAAGATGAGCTTGCTGCAG-AAAAAAAAGGAA  336
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  AATGAAAATAAAGTGAACGAAGATGAGCTTGCTGCAGAAAAAAAAAGGAA  340

seq1  AACCCTGAATGCTGTGCAAAGTGTTTTGAGTATCAATGTGAACAACTCTA  386
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCTGAATGCTGTGCAAAGTGTTTTGAGTATCAATGTGAACAACTCTA  390

seq1  CAAAGGAGCAGTGGCTGCTAAGAAATTT-AAGGATATCGTATATTATGAC  435
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  CAAAGGAGCAGTGGCTGCTAAGAAATTTAAAGGATATCGTATATTATGAC  440

seq1  CCAACAAAGCATGACCATGCCATTTATGAAAGAAAACAAGAAGATAAAGA  485
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAACAAAGCATGACCATGCCATTTATGAAAGAAAACAAGAAGATAAAGA  490

seq1  AAAAGAAAGTAAGGCCAAATGGAAGAAGAAAAAGGAAGAAGCAGAGAAGC  535
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGAAAGTAAGGCCAAATGGAAGAAGAAAAAGGAAGAAGCAGAGAAGC  540

seq1  GGCCTGAGGTATCCCAAGACATGTATTATAACATTGCTACAGATTTTGAA  585
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTGAGGTATCCCAAGACATGTATTATAACATTGCTACAGATTTTGAA  590

seq1  AGAAATATTCCAAAGTATGAGCAACACAGATGAAAAGGAAGAAGATGCGC  635
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAATATTCCAAAGTATGAGCAACACAGATGAAAAGGAAGAAGATGCGC  640

seq1  CCAGGACTGAGGCTGGTGCTAGAGAGGGGACTGGGAAAATCAGGAGGCCG  685
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGACTGAGGCTGGTGCTAGAGAGGGGACTGGGAAAATCAGGAGGCCG  690

seq1  TGACACTGGCACGTGGGCCTGAGCAGACCAGTGGCTTTACATTCCCTTTT  735
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACACTGGCACGTGGGCCTGAGCAGACCAGTGGCTTTACATTCCCTTTT  740

seq1  TTTTTTTTTTTTTTTTTTGATTCAGCCACTAAAGATGAAAAGGATGCCAC  785
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTTTTTTTTTTTGATTCAGCCACTAAAGATGAAAAGGATGCCAC  790

seq1  CTATAGAATCAAACTAGTGAAACGTGGGAAGGCAGCCCTGGAGAGCGGCT  835
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATAGAATCAAACTAGTGAAACGTGGGAAGGCAGCCCTGGAGAGCGGCT  840

seq1  CCTGAGAACGAGACCATTAGGTTTTTCCTTTTCTCTGAGAATGACGACAG  885
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGAGAACGAGACCATTAGGTTTTTCCTTTTCTCTGAGAATGACGACAG  890

seq1  ATTTCGTGGTCCTAACTTATTCTGGAGTGGTGTGGGAGATAGTATTAGCA  935
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCGTGGTCCTAACTTATTCTGGAGTGGTGTGGGAGATAGTATTAGCA  940

seq1  GAAATTCTTGGGAAGCCTGAACAGATAGTCTCCTTTTGGAATGTTGGAAG  985
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATTCTTGGGAAGCCTGAACAGATAGTCTCCTTTTGGAATGTTGGAAG  990

seq1  AAACATAAAGAAGCCAAAAGGAAGGTGAAAGCAAATTAACCATTGTCAGC  1035
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACATAAAGAAGCCAAAAGGAAGGTGAAAGCAAATTAACCATTGTCAGC  1040

seq1  TTTGGCTCTGGAATTGAATGTGCAGACGGCTCACCAGCCCTTCAAAGAAA  1085
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGCTCTGGAATTGAATGTGCAGACGGCTCACCAGCCCTTCAAAGAAA  1090

seq1  TGAGCCCAGAAAAGCATTCACTGACAAAGAAGAAATTTCACAGTAGAAAC  1135
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCCCAGAAAAGCATTCACTGACAAAGAAGAAATTTCACAGTAGAAAC  1140

seq1  ATATTCAAAACCTGGATGATAATTAATGTGTCATTCTGATGACTATTTCT  1185
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTCAAAACCTGGATGATAATTAATGTGTCATTCTGATGACTATTTCT  1190

seq1  GAGGAATTC  1194
      |||||||||
seq2  GAGGAATTC  1199

seq1: chr11_3670207_3671161
seq2: B6Ng01-317O09.g_68_1021

seq1  GAATTCCTTGGCTTGTGACATCATTCTACCCCTGCCTTGCTTTTCCCATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTTGGCTTGTGACATCATTCTACCCCTGCCTTGCTTTTCCCATT  50

seq1  CTATGTCTTTATATAGTGTCCTTGTGTATGTGTGTGTACTGTCCATGCCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGTCTTTATATAGTGTCCTTGTGTATGTGTGTGTACTGTCCATGCCC  100

seq1  ATGTTTGCATGTGTATGCCTGTGTATATGTGTGTGTATGTGCCTGAGTGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTTGCATGTGTATGCCTGTGTATATGTGTGTGTATGTGCCTGAGTGT  150

seq1  GCCTTTGTAGACTGCCCTCCTGTGTGTGCATATGTGTTGGATGCATATTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTTGTAGACTGCCCTCCTGTGTGTGCATATGTGTTGGATGCATATTC  200

seq1  ATGTATGTTCTTGTATAGTGTCCTTGCATATGCATGTGAATGTATGTGTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTATGTTCTTGTATAGTGTCCTTGCATATGCATGTGAATGTATGTGTC  250

seq1  CATGCATGTACAATGTGTGTAAGTGCCTATGTGTGTCCCTATACAATGTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCATGTACAATGTGTGTAAGTGCCTATGTGTGTCCCTATACAATGTT  300

seq1  TTCATGTGTGTGCACGTGTATTCTGTGCCTGTGTATGTGTGCATGCACAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATGTGTGTGCACGTGTATTCTGTGCCTGTGTATGTGTGCATGCACAC  350

seq1  ACATGTGTGTGTTTCTGTCAAGCTGCGATAGGAACCTGAATGACTTTGCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGTGTGTGTTTCTGTCAAGCTGCGATAGGAACCTGAATGACTTTGCC  400

seq1  ATAAAGATTACATCTGCAGAGACCTATTTTTCCCAAATAAGGTCACACTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAGATTACATCTGCAGAGACCTATTTTTCCCAAATAAGGTCACACTA  450

seq1  ACAACAAGTACAGGGCGTTAGGACATAATGCAGACCATAGGACTGGTACC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACAAGTACAGGGCGTTAGGACATAATGCAGACCATAGGACTGGTACC  500

seq1  TAATGCTGCACTTGATACACAGGGTGAGACTCTTGTTCTTGTGACTAGCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGCTGCACTTGATACACAGGGTGAGACTCTTGTTCTTGTGACTAGCC  550

seq1  AGCCAAGAAAGAGTGATGAGGTCAGAGCAGGGAGGAAAGTGTGCTGAAGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCAAGAAAGAGTGATGAGGTCAGAGCAGGGAGGAAAGTGTGCTGAAGA  600

seq1  CAGCTGGTTGGATCTGGAGGAGTGCAGGCAGGATTGGCCGCACTTAAATC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTGGTTGGATCTGGAGGAGTGCAGGCAGGATTGGCCGCACTTAAATC  650

seq1  CTGCCTAGGCATAGAGAGCACAGTGCACTCCTTTGCAGTGTGGGCTCCAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCTAGGCATAGAGAGCACAGTGCACTCCTTTGCAGTGTGGGCTCCAA  700

seq1  AGTTGACTTGCAGAAAGGCCTTCCCAGAGCCAGGAGCTAGCAGGGGAAGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGACTTGCAGAAAGGCCTTCCCAGAGCCAGGAGCTAGCAGGGGAAGG  750

seq1  CTCTTCAGGAAAGCAGTGGCAAGAGCAGAATTTGTCCCTGAAACACAC-A  799
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  CTCTTCAGGAAAGCAGTGGCAAGAGCAGAATTTGTCCCTGAAACACACAA  800

seq1  AGGCACAGCTCTGAGGAATCCCAGGCGGGAAAGTGGCCAGATGCAAAAAT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCACAGCTCTGAGGAATCCCAGGCGGGAAAGTGGCCAGATGCAAAAAT  850

seq1  GTCAACCTCGGTAGGGAACTTAATCAGGGATGAAACTGCATAGCCTGAGG  899
      |||| ||||||||||||||||||||| |||||||||||||||||||||||
seq2  GTCACCCTCGGTAGGGAACTTAATCA-GGATGAAACTGCATAGCCTGAGG  899

seq1  GAACGAGTGTAACCCAAAGAAAATGTGACAGGAAAAGGGACAGGGCCGGG  949
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  GAACGAGTGTAACCCAAAGAAAATGTGACAGGAAAAGGGACAGGGCC-GG  948

seq1  CTGCAG  955
      ||||||
seq2  CTGCAG  954