BAC Information

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BAC

Clone NameB6Ng01-318A15
Chromosome7 (Build37)11 (Build37)
Map Location 116,873,811 - 116,873,954114,166,830 - 114,167,634
singlet/doubletsingletsinglet
Overlap geneAscl3
Upstream geneOlfr513, Olfr514, Olfr515-ps1, Olfr516, Olfr517, Olfr518, Olfr519, Nlrp10, Eif3s5, BC049265, Tub, Ric3, Lmo1, Stk33, EG668320, 1700095J03Rik, Trim66, Rpl27a, St5, LOC100042582, D930014E17Rik, BC051019
Downstream geneTmem9b, 4930431P19Rik, Nrip3, Scube2, Phxr5, Rab6ip1, Tmem41b, Ipo7, AA474408, Zfp143, Wee1, Swap70, EG668368, Sbf2, LOC668246, Adm
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-318A15.bB6Ng01-318A15.g
ACCGA108028GA108029
length395806
definitionB6Ng01-318A15.b B6Ng01-318A15.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(116,873,811 - 116,873,954)(114,166,830 - 114,167,634)
sequence
acattctctccatctcactgtgctcaatggaaatgtgagcctaggaaaaa
tggtgtgtgcgtgtgcgcctgtgtgcctgtgcgtgggcattcgcacgcat
gcctgtggatgccacaggacaacctctggtgctgtttctcaggataccat
ccacctgtttttgagacaaggcctctcacttggccccaaatacagttccg
ttagtctggctggtcagcgagccccgggcatcctcctctctccagcatta
caagtatgcatcattaagtctttctttctttctttctctctctctctctc
tctctctctctctctccctctccctctccctctctccctctctccctctc
tccctctctccctctctctctccctctctttctgtctttctctct
gaattctccccctgattcacagcaggggcagggcgagggcctcctggcat
tgccacaacagcatggagtctctatgcagcccctgagttcacagcctctg
gagaacagggtcacaggctcttgtgggcccttctagctgagcacacccca
gacgtggggatcacagtcccttcccacatcccagcaggaccaggtctgcc
tctgtgcgcaagctgtactaagtcccatcctggctccagtcatttccacc
aagcctgttctgcagctcaactggcttcccctctacctctgaaagagtct
caatctgccatttctttccaaagtcatttccaataatcccccgttggctc
tggaagggtcccccaggccacctgatgcctgggtgtctccagtcacaggc
agtccgttctcatccatgccatctgcagacagctgggcccgatgggaagc
tctgaaatcccattgccaacaaaatggaactctctctaggtcccactgtg
acacaagtatctctgtcaccacaccagaataattgtgcattaaagggatg
tcctggggcaggacctgtatttatgctgctttataaacagaaagcctttt
aagaagttaattgtgatggtgggtggtggtggtgacttcccagggagatg
aagagtaccctaatgacaagactgggggcccgtgagcacctgacgagggc
aggggggccattctgaagagggctggggtccaaccgggctctgagggaag
gagggtaggtcacagcccaggataagctgtttaggacgtgatgacttaga
caggaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_116873811_116873954
seq2: B6Ng01-318A15.b_340_446 (reverse)

seq1  AGAGAGACAGAGAGACAGAGAGAGAGAGGGAGAGGGAGAGAGGGAGAGGG  50
      ||||||| ||| ||| |||||| ||||| ||||||||||||||||     
seq2  AGAGAGAAAGACAGAAAGAGAGGGAGAGAGAGAGGGAGAGAGGGA-----  45

seq1  AGGAGAGGGAGGAGAGGGAGAGA-GGAGAGGGAGAGGGAGAGGGAGAGGG  99
        |||||||| |||||||||||| |||||||||||||||||| ||||| |
seq2  --GAGAGGGA-GAGAGGGAGAGAGGGAGAGGGAGAGGGAGAGAGAGAGAG  92

seq1  AGAGAGAGGGAGAGAGGGAAAATCACAGAGAGGGAGAGAGAGAGA  144
      |||||||| ||||||                              
seq2  AGAGAGAGAGAGAGA------------------------------  107

seq1: chr11_114166830_114167634
seq2: B6Ng01-318A15.g_68_873

seq1  GAATTCTCCCCCTGACTCACAGCAGGGGCAGGGCGAGGGCCTCCTGGCAT  50
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  GAATTCTCCCCCTGATTCACAGCAGGGGCAGGGCGAGGGCCTCCTGGCAT  50

seq1  TGCCACAACAGCATGGAGTCTCTATGCAGCCCCTGAGTTCACAGCCTCTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCACAACAGCATGGAGTCTCTATGCAGCCCCTGAGTTCACAGCCTCTG  100

seq1  GAGAACAGGGTCACAGGCTCTTGTGGGCCCTTCTAGCTGAGCACACCCCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAACAGGGTCACAGGCTCTTGTGGGCCCTTCTAGCTGAGCACACCCCA  150

seq1  GACGTGGGGATCACAGTCCCTTCCCACATCCCAGCAGGACCAGGTCTGCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACGTGGGGATCACAGTCCCTTCCCACATCCCAGCAGGACCAGGTCTGCC  200

seq1  TCTGTGCGCAAGCTGTACTAAGTCCCATCCTGGCTCCAGTCATTTCCACC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTGCGCAAGCTGTACTAAGTCCCATCCTGGCTCCAGTCATTTCCACC  250

seq1  AAGCCTGTTCTGCAGCTCAACTGGCTTCCCCTCTACCTCTGAAAGAGTCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCTGTTCTGCAGCTCAACTGGCTTCCCCTCTACCTCTGAAAGAGTCT  300

seq1  CAATCTGCCATTTCTTTCCAAAGTCATTTCCAATAATCCCCCGTTGGCTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATCTGCCATTTCTTTCCAAAGTCATTTCCAATAATCCCCCGTTGGCTC  350

seq1  TGGAAGGGTCCCCCAGGCCACCTGATGCCTGGGTGTCTCCAGTCACAGGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAGGGTCCCCCAGGCCACCTGATGCCTGGGTGTCTCCAGTCACAGGC  400

seq1  AGTCCGTTCTCATCCATGCCATCTGCAGACAGCTGGGCCCGATGGGAAGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCCGTTCTCATCCATGCCATCTGCAGACAGCTGGGCCCGATGGGAAGC  450

seq1  TCTGAAATCCCATTGCCAACAAAATGGAACTCTCTCTAGGTCCCACTGTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAAATCCCATTGCCAACAAAATGGAACTCTCTCTAGGTCCCACTGTG  500

seq1  ACACAAGTATCTCTGTCACCACACCAGAATAATTGTGCATTAAAGGGATG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAAGTATCTCTGTCACCACACCAGAATAATTGTGCATTAAAGGGATG  550

seq1  TCCTGGGGCAGGACCTGTATTTATGCTGCTTTATAAACAGAAAGCCTTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGGGGCAGGACCTGTATTTATGCTGCTTTATAAACAGAAAGCCTTTT  600

seq1  AAGAAGTTAATTGTGATGGTGGGTGGTGGTGGTGACTTCCCAGGGAGATG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAGTTAATTGTGATGGTGGGTGGTGGTGGTGACTTCCCAGGGAGATG  650

seq1  AAGAGTACCCTAATGACAAGACTGGGGGCCCGTGAGCACCTGACGAGGGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGTACCCTAATGACAAGACTGGGGGCCCGTGAGCACCTGACGAGGGC  700

seq1  AGGGGGGCCATTCGGAAGAGGGCTGGGGTCC-ACCGGGCTCTGAGGGAAG  749
      ||||||||||||| ||||||||||||||||| ||||||||||||||||||
seq2  AGGGGGGCCATTCTGAAGAGGGCTGGGGTCCAACCGGGCTCTGAGGGAAG  750

seq1  GAGGG-AGGTCACAGCCCAGGAGAAGCTGTTTAGGACGTGATGACTTCAG  798
      ||||| |||||||||||||||| |||||||||||||||||||||||| ||
seq2  GAGGGTAGGTCACAGCCCAGGATAAGCTGTTTAGGACGTGATGACTT-AG  799

seq1  ACAGGAA  805
      |||||||
seq2  ACAGGAA  806