BAC Information

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BAC

Clone NameB6Ng01-319M12
Chromosome11 (Build37)
Map Location 120,050,411 - 120,051,231
singlet/doubletsinglet
Overlap geneLOC100043384
Upstream geneTbc1d16, Ccdc40, Gaa, Eif4a3, Card14, Sgsh, Slc26a11, LOC672511, Rnf213, A730011L01Rik, Nptx1, 4932417H02Rik, Chmp6, Baiap2, Aatk, Azi1, 2410002I01Rik, 1810043H04Rik, 1810073N04Rik, 2810410L24Rik, LOC100042332
Downstream geneLOC100043389, Bahcc1, Actg1, Fscn2, 2310003H01Rik, Nploc4, Tspan10, Pde6g, 1810049H13Rik, 3110023B02Rik, 2600005N12Rik, Hgs, Mrpl12, Slc25a10, LOC667716, Gcgr, BC003940, Dysfip1, P4hb, Arhgdia, LOC100042371, Thoc4, Anapc11, Npb, Pcyt2, Sirt7, Mafg, Pycr1, 1110012N22Rik, 5730593N15Rik, Aspscr1, Stra13, Lrrc45, Rac3, Dcxr, Cbr2, Hmga1-rs1, LOC667778, Rfng, Gps1, Dus1l, Fasn, Ccdc57, LOC100043454, Slc16a3, Csnk1d, Cd7, Sectm1b, Sectm1a, LOC637008, 4921530G04Rik, Tex19, Uts2r, 1110031I02Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-319M12.bB6Ng01-319M12.g
ACCGA109327GA109328
length1,079822
definitionB6Ng01-319M12.b B6Ng01-319M12.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcttcatctgcttcagagctactaagagctggctccccgagcccat
ccagcgatgagcacaggctccttttcctagagacctccgctaattgatct
ttcttcttttccctttttcctctttttcttctaatctctctccaggtatt
cctacctaaccttaacttttcctcgggttcaagacccttggaaaggcctg
tatacttattttgtgtaccatattttctctttgctcctactctctctccc
cgctttacttctgatagattgccctgaatttcatctagaatccgccctgc
cttaaccacttgataacatgtgaaaaggaacaaaagggcttctaacatta
gaaaaaattcaaggccaaacattttccactttacttctgatagactgtct
tgaatttccttagaaagttcaaggccaggcttacctcgtaaagctatact
cactggtactctcgttccccagctgaaaagttctgaattcatgcagttga
atccttctcaacagtctgtgttgtgggaacacttcataaccgtgacccgc
agttctggttccggaatgagggatcttccttgcaccggtgatggtaaact
ctcgtcccgagttttttctcgtcccggaattcggcaccaattcttattaa
acgcgttctcacgcccggccaggaagaacacagcaaaccagaatcttctg
cggcaaaactttattgcttacatcttcaggagcaagagtgtaagaagcaa
gagagcgagaaaacgaaaccccgtccctcttaaggagaattatccttcgc
ctaggacgtgtcactccctgattggctgcagcccatcggccgagttgacg
tcacggggaaaggcagagcacatggagtggagaaccaccctcggcacatg
cgcagattatttgtttaccacttagaacacagctgtcagcgccatcttgt
aacggcgatgtggcgcggctcctaccagaggaacatgccaatgatgtata
gtgcataaaccaatccagggtgtgagacgtgcctttgctaaggccttaat
tagtcgacatcatatactgagactgcgag
gaattctaggtttccgggttgggggataactgtatgaaccacttcgaaac
agagccatcttgctgtagtacccatggagtcctggatgaatttcgtgggc
ctctgaagaaagtgacgcgcatttccacaggaactggctccaagcccgtc
ttacgggtggtggagagcccagtagggattccagaatacagctcaggagg
ctaccccgagttcggctaccgtcccaggacccctcagaaagacacgtttg
gtgcgaaaatctcctacacaccagctgggtttttattccttccctcccca
gagtgtgctctgggcgcgcgggaaacaaggaaaaagcacgtacctggcgg
cgctctgagggcagcctcaccggccctccgtaggcaagggagctcccaga
agctactccctatccggctggtcgaccctaggcctgtccctccatccctc
cctccctacccggctggtcgacctccgccgagctaattctccaggaggca
ggagcgggatacccggcccgcctttctggaaatgggatccgttttttagc
gccagggcccgcgccaacgtccaggccaccgtcggcgcgcagggtttccc
tagtcctttggatcagcagagagtggggcggcctggacgctgggctgcgg
ctcgcgcaccagctccctgttcccgcgcgcccttctgcatccaggctccg
gcgtgtccacgttcccaatcgcgaaaaggggacgaactctgagccctccg
ggaagagaaggctgcagccgcagtccaggaaagagccctagggcgggagg
ggtgcaggggcggaggggcggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_120050411_120051231
seq2: B6Ng01-319M12.g_65_886

seq1  GAATTCTAGGTTTCCGGGTTGGGGGATAACTGTATGAACCACTTCGAAAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTAGGTTTCCGGGTTGGGGGATAACTGTATGAACCACTTCGAAAC  50

seq1  AGAGCCATCTTGCTGTAGTACCCATGGAGTCCTGGATGAATTTCGTGGGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCCATCTTGCTGTAGTACCCATGGAGTCCTGGATGAATTTCGTGGGC  100

seq1  CTCTGAAGAAAGTGACGCGCATTTCCACAGGAACTGGCTCCAAGCCCGTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGAAGAAAGTGACGCGCATTTCCACAGGAACTGGCTCCAAGCCCGTC  150

seq1  TTACGGGTGGTGGAGAGCCCAGTAGGGATTCCAGAATACAGCTCAGGAGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACGGGTGGTGGAGAGCCCAGTAGGGATTCCAGAATACAGCTCAGGAGG  200

seq1  CTACCCCGAGTTCGGCTACCGTCCCAGGACCCCTCAGAAAGACACGTTTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACCCCGAGTTCGGCTACCGTCCCAGGACCCCTCAGAAAGACACGTTTG  250

seq1  GTGCGAAAATCTCCTACACACCAGCTGGGTTTTTATTCCTTCCCTCCCCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCGAAAATCTCCTACACACCAGCTGGGTTTTTATTCCTTCCCTCCCCA  300

seq1  GAGTGTGCTCTGGGCGCGCGGGAAACAAGGAAAAAGCACGTACCTGGCGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGTGCTCTGGGCGCGCGGGAAACAAGGAAAAAGCACGTACCTGGCGG  350

seq1  CGCTCTGAGGGCAGCCTCACCGGCCCTCCGTAGGCAAGGGAGCTCCCAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCTCTGAGGGCAGCCTCACCGGCCCTCCGTAGGCAAGGGAGCTCCCAGA  400

seq1  AGCTACTCCCTATCCGGCTGGTCGACCCTAGGCCTGTCCCTCCATCCCTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTACTCCCTATCCGGCTGGTCGACCCTAGGCCTGTCCCTCCATCCCTC  450

seq1  CCTCCCTACCCGGCTGGTCGACCTCCGCCGAGCTAATTCTCCAGGAGGCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCCTACCCGGCTGGTCGACCTCCGCCGAGCTAATTCTCCAGGAGGCA  500

seq1  GGAGCGGGATACCCGGCCCGCCTTTCTGGAAATGGGATCCGTTTTTTAGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGCGGGATACCCGGCCCGCCTTTCTGGAAATGGGATCCGTTTTTTAGC  550

seq1  GCCAGGGCCCGCGCCAACGTCCAGGCCACCGTCGGCGCGCAGGGTTTCCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGGGCCCGCGCCAACGTCCAGGCCACCGTCGGCGCGCAGGGTTTCCC  600

seq1  TAGTCCTTTGGATCAGCAGAGAGTGGGGCGGCCTGGACGCTGGGCTGCGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTCCTTTGGATCAGCAGAGAGTGGGGCGGCCTGGACGCTGGGCTGCGG  650

seq1  CTCGCGCACCAGCTCCCTGTTCCCGCGCGCCCTTCTGCATCCAGGCTCCG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCGCGCACCAGCTCCCTGTTCCCGCGCGCCCTTCTGCATCCAGGCTCCG  700

seq1  GCGTGTCCACGTTCCCAATCGCGAAAAGGGGACGAACTCTGAGCCCTCCG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGTGTCCACGTTCCCAATCGCGAAAAGGGGACGAACTCTGAGCCCTCCG  750

seq1  GGAAGAGAAGGCTGCAGCCGCAGTCCAGGAAAGAGCCCTAGGGCGGGAGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGAGAAGGCTGCAGCCGCAGTCCAGGAAAGAGCCCTAGGGCGGGAGG  800

seq1  GGTGCA-GGGCGGAGGGGCGGG  821
      |||||| |||||||||||||||
seq2  GGTGCAGGGGCGGAGGGGCGGG  822