BAC Information

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BAC

Clone NameB6Ng01-326L17
Chromosome11 (Build37)
Map Location 54,458,620 - 54,575,021
singlet/doubletdoublet
Overlap geneRapgef6, Cdc42se2, LOC677786
Upstream geneLOC667731, Rad50, Il5, Irf1, LOC622459, Slc22a5, LOC667762, Slc22a21, Slc22a4, Pdlim4, P4ha2, LOC623647, Dbi-ps, Csf2, Il3, Acsl6, 4930404A10Rik, LOC100041400, LOC100041411, Fnip1
Downstream geneLOC100041463, Lyrm7, Hint1, Gpx3, Tnip1, LOC667826, Anxa6, Ccdc69, Gm2a, LOC667832, Slc36a3, Slc36a2, Slc36a1, Fat2, Sparc, Atox1, G3bp, Glra1
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-326L17.bB6Ng01-326L17.g
ACCGA114469GA114470
length9661,088
definitionB6Ng01-326L17.b B6Ng01-326L17.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(54,458,620 - 54,459,582)(54,573,931 - 54,575,021)
sequence
gaattcactgtgtagccatagctggtttcaaactctttaaagggctgaac
tcttgcttctacttcttcccaagagctagaagcacaggtatgcgtcaccc
acagcaagtaaatgatttttcttctttcattttttttttcattttgcaaa
gactgcaaataggaaatggaataagactataaacacccaaagtcttctcc
cagtgatgaacttcctctagcaaggctacactgtccaagcttccctacat
agcaccaccaacttggaaacaagtgttcaaatatttgaatctatagggga
catactcattcaaaccactacagagattcaccctttcagacaaactcctg
agaattatttataagggaaaaacaacactgtgatatcagtagataatagg
cagagaacatgagttcggatgatacatatagatgtttatccaagggtaca
caccctttctatagacctcgtcatgatggtgatcttgatgatcatcacca
tgatggtgtcctcaagctcctgtgaccaaataagtgatcctcctgcttca
gcctcacaagagctagaaatacgccacaagtccaagtatgagtttgttta
gctaaatggtatgttagacgtgaaagtacaagaaggacaaatgttcagat
gtctgtttgggttttgtttttgtctttgtttttgttttttataaggcaca
agtaagttttccccttttttcccgtgttatcttccaactttcctactata
aaatatttcaattcttttcattgaaattaaaaattaagtaattttgccag
gtggtagtggtacacacacacacctttaatcccagcattcacaaggcaga
aacaggcagatctctgagttcgaggccagcctgggtctagagtgggttct
aggacagccatgactagaacagataaacccacttctcagataccaaaata
aaaatattaattttaa

gaattcagatagaaatgtaagaaagattaagtttggaaaacatgatactg
tcccaaaagtgagattaaagaggaatcttagacttggagcctgggttgga
aacaggtcgtggtgagttggtggagcaaaggaatcctgtcaccaaagagg
gactgtgagagagctggggagccagcatactttgtaacccagctcttggg
aggcagaggcagaggcagaggcagaggggcagagagagaggggcagagag
agaggggggcagagagaggcagagaggcagagaggcagaggcagagaggc
aagaggacagagatttcccatgccagcctgtctagtgtggcactgatcca
cagaaggaggaggagatagaacatttgaaaatgaaatatagggggaaaat
cagaaagcatttcagttataaacaagggtggtcatgcaatttatgattag
gtagaattttaatataatttgttatttgaactggacatcctgagatagag
acaggaatgaccatgaaaacaagtgtaaattgaaaccatgatgggcagtc
cttatacaaggttatatctatttcatttgtagcataatgaaatatttaaa
aattcagttgagtgtcaagcattatactgaattaagtggcacttctgctt
gcttctgcttctcaagtgcctgtgccaccatgcccaatttataagtatat
atatatttattagattatctggagtagtttaataggaatcaagttctgct
aatgtgagtttctatccatttgggaaaaatgaaaactaagtaaaaaattt
tccagtaagacctagggctctcccttacagtttgatcggtttaagcttat
gacttttgaattacagtggattggtacttaaaacttgtaagagggtgtaa
ggattagaacgagtcatagctgggtttctgctattagtgggatctttatt
ttactctccactgtcctgatagtagatactgagggcaggacatatacttt
tgacgcagcagtgacacagacagtgtcccagtgtctctcatcctctggtc
tccacctgggtgatgagacatgtttaactttctgtgac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_54458620_54459582
seq2: B6Ng01-326L17.b_48_1013

seq1  GAATTCACTGTGTAGCCATAGCTGGTTTCAAACTCTTTAAAGGGCTGAAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTGTGTAGCCATAGCTGGTTTCAAACTCTTTAAAGGGCTGAAC  50

seq1  TCTTGCTTCTACTTCTTCCCAAGAGCTAGAAGCACAGGTATGCGTCACCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGCTTCTACTTCTTCCCAAGAGCTAGAAGCACAGGTATGCGTCACCC  100

seq1  ACAGCAAGTAAATGATTTTTCTTCTTTCATTTTTTTTTTCATTTTGCAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCAAGTAAATGATTTTTCTTCTTTCATTTTTTTTTTCATTTTGCAAA  150

seq1  GACTGCAAATAGGAAATGGAATAAGACTATAAACACCCAAAGTCTTCTCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGCAAATAGGAAATGGAATAAGACTATAAACACCCAAAGTCTTCTCC  200

seq1  CAGTGATGAACTTCCTCTAGCAAGGCTACACTGTCCAAGCTTCCCTACAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGATGAACTTCCTCTAGCAAGGCTACACTGTCCAAGCTTCCCTACAT  250

seq1  AGCACCACCAACTTGGAAACAAGTGTTCAAATATTTGAATCTATAGGGGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACCACCAACTTGGAAACAAGTGTTCAAATATTTGAATCTATAGGGGA  300

seq1  CATACTCATTCAAACCACTACAGAGATTCACCCTTTCAGACAAACTCCTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACTCATTCAAACCACTACAGAGATTCACCCTTTCAGACAAACTCCTG  350

seq1  AGAATTATTTATAAGGGAAAAACAACACTGTGATATCAGTAGATAATAGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATTATTTATAAGGGAAAAACAACACTGTGATATCAGTAGATAATAGG  400

seq1  CAGAGAACATGAGTTCGGATGATACATATAGATGTTTATCCAAGGGTACA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGAACATGAGTTCGGATGATACATATAGATGTTTATCCAAGGGTACA  450

seq1  CACCCTTTCTATAGACCTCGTCATGATGGTGATCTTGATGATCATCACCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCTTTCTATAGACCTCGTCATGATGGTGATCTTGATGATCATCACCA  500

seq1  TGATGGTGTCCTCAAGCTCCTGTGACCAAATAAGTGATCCTCCTGCTTCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGGTGTCCTCAAGCTCCTGTGACCAAATAAGTGATCCTCCTGCTTCA  550

seq1  GCCTCACAAGAGCTAGAAATACGCCACAAGTCCAAGTATGAGTTTGTTTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCACAAGAGCTAGAAATACGCCACAAGTCCAAGTATGAGTTTGTTTA  600

seq1  GCTAAATGGTATGTTAGACGTGAAAGTACAAGAAGGACAAATGTTCAGAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAAATGGTATGTTAGACGTGAAAGTACAAGAAGGACAAATGTTCAGAT  650

seq1  GTCTGTTTGGGTTTTGTTTTTGTCTTTGTTTTTGTTTTTTATAAGGCACA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGTTTGGGTTTTGTTTTTGTCTTTGTTTTTGTTTTTTATAAGGCACA  700

seq1  AGTAAGTTTTCCCCTTTTTTCCCGTGTTATCTTCCAACTTTCCTACTATA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAAGTTTTCCCCTTTTTTCCCGTGTTATCTTCCAACTTTCCTACTATA  750

seq1  AAATATTTCAATTCTTTTCATTGAAATTAAAAATTAAGTAATTTTGCCAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATTTCAATTCTTTTCATTGAAATTAAAAATTAAGTAATTTTGCCAG  800

seq1  GTGGTAGTGGTACACACACACACCTTTAATCCCAGCATTCACAAGGCAGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTAGTGGTACACACACACACCTTTAATCCCAGCATTCACAAGGCAGA  850

seq1  AACAGGCAGATCTCTGAGTTCGAGGCCAGCCT-GGTCTAGAGTGGGTTCT  899
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  AACAGGCAGATCTCTGAGTTCGAGGCCAGCCTGGGTCTAGAGTGGGTTCT  900

seq1  AGGACAGCCAGGACTAG-ACAGATAAACCCAC-TCTCAAGAAACCAAAAT  947
      |||||||||| |||||| |||||||||||||| |||| ||| ||||||||
seq2  AGGACAGCCATGACTAGAACAGATAAACCCACTTCTC-AGATACCAAAAT  949

seq1  -AAAATATTAATTTTAA  963
       ||||||||||||||||
seq2  AAAAATATTAATTTTAA  966


seq1: chr11_54573931_54575021
seq2: B6Ng01-326L17.g_67_1154 (reverse)

seq1  GTCACAGAAAAGTTAAACATGTTCTCCATCACCCAG--TGAGACCAGAGG  48
      ||||||| ||||||||||||| ||| ||||||||||   |||||||||||
seq2  GTCACAG-AAAGTTAAACATG-TCT-CATCACCCAGGTGGAGACCAGAGG  47

seq1  ATGAGGAGAACCACTGGGACACTGTTCTGTGTCACTGCTGCGTC-AAAGT  97
      |||| ||||  ||||||||||||| ||||||||||||||||||| |||||
seq2  ATGA-GAGA--CACTGGGACACTG-TCTGTGTCACTGCTGCGTCAAAAGT  93

seq1  ATAATGTCCTG-CCTCAGTATCTACTATCAGGACAGTGGAGAGT-AAATA  145
      || |||||||| |||||||||||||||||||||||||||||||| |||||
seq2  AT-ATGTCCTGCCCTCAGTATCTACTATCAGGACAGTGGAGAGTAAAATA  142

seq1  AAGATCCCACTAATAGCAGAAACCCAGCTATGACTCCTTCTAATCCTTAC  195
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  AAGATCCCACTAATAGCAGAAACCCAGCTATGACTCGTTCTAATCCTTAC  192

seq1  ACCCTCTTACAAGTTTTAAGTACCAATCCACTGTAATTCAAAAGTCATAA  245
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTCTTACAAGTTTTAAGTACCAATCCACTGTAATTCAAAAGTCATAA  242

seq1  GCTTAAACCGATCAAACTGTAAGGGAGAGCCCTAGGTCTTACTGGAAAAT  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTAAACCGATCAAACTGTAAGGGAGAGCCCTAGGTCTTACTGGAAAAT  292

seq1  TTTTTACTTAGTTTTCATTTTTCCCAAATGGATAGAAACTCACATTAGCA  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTACTTAGTTTTCATTTTTCCCAAATGGATAGAAACTCACATTAGCA  342

seq1  GAACTTGATTCCTATTAAACTACTCCAGATAATCTAATAAATATATATAT  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTTGATTCCTATTAAACTACTCCAGATAATCTAATAAATATATATAT  392

seq1  ACTTATAAATTGGGCATGGTGGCACAGGCACTTGAGAAGCAGAAGCAAGC  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTATAAATTGGGCATGGTGGCACAGGCACTTGAGAAGCAGAAGCAAGC  442

seq1  AGAAGTGCCACTTAATTCAGTATAATGCTTGACACTCAACTGAATTTTTA  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGTGCCACTTAATTCAGTATAATGCTTGACACTCAACTGAATTTTTA  492

seq1  AATATTTCATTATGCTACAAATGAAATAGATATAACCTTGTATAAGGACT  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATTTCATTATGCTACAAATGAAATAGATATAACCTTGTATAAGGACT  542

seq1  GCCCATCATGGTTTCAATTTACACTTGTTTTCATGGTCATTCCTGTCTCT  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCATCATGGTTTCAATTTACACTTGTTTTCATGGTCATTCCTGTCTCT  592

seq1  ATCTCAGGATGTCCAGTTCAAATAACAAATTATATTAAAATTCTACCTAA  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCAGGATGTCCAGTTCAAATAACAAATTATATTAAAATTCTACCTAA  642

seq1  TCATAAATTGCATGACCACCCTTGTTTATAACTGAAATGCTTTCTGATTT  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATAAATTGCATGACCACCCTTGTTTATAACTGAAATGCTTTCTGATTT  692

seq1  TCCCCCTATATTTCATTTTCAAATGTTCTATCTCCTCCTCCTTCTGTGGA  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCCTATATTTCATTTTCAAATGTTCTATCTCCTCCTCCTTCTGTGGA  742

seq1  TCAGTGCCACACTAGACAGGCTGGCATGGGAAATCTCTGTCCTCTTGCCT  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTGCCACACTAGACAGGCTGGCATGGGAAATCTCTGTCCTCTTGCCT  792

seq1  CTCTGCCTCTGCCTCTCTGCCTCTCTGCCTCTCTCTGCCCCCCTCTCTCT  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGCCTCTGCCTCTCTGCCTCTCTGCCTCTCTCTGCCCCCCTCTCTCT  842

seq1  CTGCCCCTCTCTCTCTGCCCCTCTGCCTCTGCCTCTGCCTCTGCCTCCCA  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCCCTCTCTCTCTGCCCCTCTGCCTCTGCCTCTGCCTCTGCCTCCCA  892

seq1  AGAGCTGGGTTACAAAGTATGCTGGCTCCCCAGCTCTCTCACAGTCCCTC  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCTGGGTTACAAAGTATGCTGGCTCCCCAGCTCTCTCACAGTCCCTC  942

seq1  TTTGGTGACAGGATTCCTTTGCTCCACCAACTCACCACGACCTGTTTCCA  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGTGACAGGATTCCTTTGCTCCACCAACTCACCACGACCTGTTTCCA  992

seq1  ACCCAGGCTCCAAGTCTAAGATTCCTCTTTAATCTCACTTTTGGGACAGT  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCAGGCTCCAAGTCTAAGATTCCTCTTTAATCTCACTTTTGGGACAGT  1042

seq1  ATCATGTTTTCCAAACTTAATCTTTCTTACATTTCTATCTGAATTC  1091
      ||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATGTTTTCCAAACTTAATCTTTCTTACATTTCTATCTGAATTC  1088


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