BAC Information

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BAC

Clone NameB6Ng01-328D18
Chromosome11 (Build37)
Map Location 75,513,457 - 75,698,751
singlet/doubletdoublet
Overlap geneCrk, Ywhae, Doc2b, Rph3al
Upstream genePafah1b1, Mett10d, Mnt, Rutbc1, Tsr1, Srr, LOC100042478, Smg6, LOC100043429, LOC627835, Hic1, LOC668604, Ovca2, Dph1, Rtn4rl1, Rpa1, Smyd4, Serpinf1, LOC100043447, Serpinf2, Wdr81, LOC100042498, 2010305C02Rik, Prpf8, Rilp, Scarf1, Slc43a2, Pitpna, LOC654359, Pps, Myo1c
Downstream gene1700016K19Rik, 1500005K14Rik, Vps53, LOC668634, 2310047D13Rik, Gemin4, Dbil5, Glod4, Rnmtl1, Nxn, Timm22, Abr, LOC100043483, A830053O21Rik, Tusc5, Gosr1, Cpd
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-328D18.bB6Ng01-328D18.g
ACCGA115555GA115556
length1,0041,150
definitionB6Ng01-328D18.b B6Ng01-328D18.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(75,513,457 - 75,514,447)(75,697,587 - 75,698,751)
sequence
gaattccaggccagccagccagtttcaaacagactgaaataaaataggac
aagatgaataaggtggtgcacatgtgcaaccccagcattgaggggtccca
gttcatcctcagctatgtgagtgcaaagtcagcctacatcaggtcagaaa
gctagacgaaaggaagtgttgagtgttggacctccctttaaaaccaggct
gtagtgagttgatgtctaacaggagaaagtacatacatagctctggcttt
ctcaaacagcaaggactggtcttaatgccccggcattaacagttgccctt
ttccccccaaactgttggaaaacctgtctcgtggggcttcagtgacagct
ctgctcttttaaggttagttacattctctttggcttttgtccttgacttc
aagagcccccgagaactttgaacatttcaagagggcaaccctgtgaggca
caaagggttattaattttaagagtttgtagatgaaggccaccttagggag
ttttatttgcccagctgactgcttacatgttctcataggtccatgtaaaa
attacagtcatttcatctttttttcatctttttcttctagctcctgatgg
tttgatctctctactaaggacttacgagtttaaaaagcaaattttatatt
taagatactgttcttcttgggctgggacagatggctcagcggttaaagag
cattgactgctcttccgaaggccctgagttcaaatcccaagcaaccacat
ggtggctcacaaccatcttgtaatgacatctgactccctctgctggtgtt
ttctgaagacagctacagtgtactttacaaaataaatcttttaaaaaaaa
tttaaaaaaaaaggattaccgtttcattttgagtctcctttatagcatca
gaaccaggagaattattaaaatggatctctcctttctgagagggtttctc
tctgaagtggccttggactttttctagaattcacttctgtagacattccg
tggc
tggggagttaggcaaaggcacctgggttttgatctctctggctttaagat
aagccttttaatttatacatttatttttgagacccagtcttgtgtggcct
gagttgtcctaccatgtagctgaagattctcctaagtccccagttccctg
cctgtttgcggagagctgaattatcggagtggtccactacccctggatta
tgcagtgtgggatggaatccaaggctctgccaattgaactccattgcctg
cccctcgggggccttttgtcaggctctcgggctcttggctgtggtctggg
taggggacatgtggccttggcttcctgggcagcataactgaagtaggtgt
tatgaggacattttgggggacactgtttccagccttaaaagaggtattcc
acacacaggcagcctacaggatgcaccccaggggtgctcatgtgagggta
agatggacatctctgctgcctgcctttatcaaaggatgttttatgtcatt
tctgaggcctgccctgctggccccatgtttcattccttaagaataagcgc
ctccccaagccagtagtacaactcctctggggaccccacactatgcactg
tgtatgcctctcctcagtctaacctccgtcccagcatcccactcatcaga
accacttggcatggaccaggctcatgctgctaagtgtgtgtctgtgtgtt
acctcccagcacttgggcacattccaaggggaacacatctcacctttttt
ggttatagtactagacagggctcccctttcttcctttgtgctttctgctg
ataattgtaatgggcaccaagaagaggaaagtgggcaacaacaggcatgg
cctctgccctgctgacagcctggtggggacagtggccatggtccttcaca
cgcattggagaatcaaaacatacctggacagtcgggaagagaggcaagtg
cctgcaattgaagtggctactgggtaggcaagagaagcctgcctcgaaga
gtgccacttctgctcgagtctaaaggacatctaagtcagtgagagacgcg
tgtcagatgcatcccagtagcctgcagcacagtgggatccaggacgagaa
cagagcagaactggtccttagtggaatccaatgtgctgaactgtaaagtg

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_75513457_75514447
seq2: B6Ng01-328D18.b_48_1051

seq1  GAATTCCAGGCCAGCCAGCCAGTTTCAAACAGACTGAAATAAAATAGGAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGGCCAGCCAGCCAGTTTCAAACAGACTGAAATAAAATAGGAC  50

seq1  AAGATGAATAAGGTGGTGCACATGTGCAACCCCAGCATTGAGGGGTCCCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATGAATAAGGTGGTGCACATGTGCAACCCCAGCATTGAGGGGTCCCA  100

seq1  GTTCATCCTCAGCTATGTGAGTGCAAAGTCAGCCTACATCAGGTCAGAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCATCCTCAGCTATGTGAGTGCAAAGTCAGCCTACATCAGGTCAGAAA  150

seq1  GCTAGACGAAAGGAAGTGTTGAGTGTTGGACCTCCCTTTAAAACCAGGCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAGACGAAAGGAAGTGTTGAGTGTTGGACCTCCCTTTAAAACCAGGCT  200

seq1  GTAGTGAGTTGATGTCTAACAGGAGAAAGTACATACATAGCTCTGGCTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGTGAGTTGATGTCTAACAGGAGAAAGTACATACATAGCTCTGGCTTT  250

seq1  CTCAAACAGCAAGGACTGGTCTTAATGCCCCGGCATTAACAGTTGCCCTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAAACAGCAAGGACTGGTCTTAATGCCCCGGCATTAACAGTTGCCCTT  300

seq1  TTCCCCCCAAACTGTTGGAAAACCTGTCTCGTGGGGCTTCAGTGACAGCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCCCCAAACTGTTGGAAAACCTGTCTCGTGGGGCTTCAGTGACAGCT  350

seq1  CTGCTCTTTTAAGGTTAGTTACATTCTCTTTGGCTTTTGTCCTTGACTTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTCTTTTAAGGTTAGTTACATTCTCTTTGGCTTTTGTCCTTGACTTC  400

seq1  AAGAGCCCCCGAGAACTTTGAACATTTCAAGAGGGCAACCCTGTGAGGCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGCCCCCGAGAACTTTGAACATTTCAAGAGGGCAACCCTGTGAGGCA  450

seq1  CAAAGGGTTATTAATTTTAAGAGTTTGTAGATGAAGGCCACCTTAGGGAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGGGTTATTAATTTTAAGAGTTTGTAGATGAAGGCCACCTTAGGGAG  500

seq1  TTTTATTTGCCCAGCTGACTGCTTACATGTTCTCATAGGTCCATGTAAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATTTGCCCAGCTGACTGCTTACATGTTCTCATAGGTCCATGTAAAA  550

seq1  ATTACAGTCATTTCATCTTTTTTTCATCTTTTTCTTCTAGCTCCTGATGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACAGTCATTTCATCTTTTTTTCATCTTTTTCTTCTAGCTCCTGATGG  600

seq1  TTTGATCTCTCTACTAAGGACTTACGAGTTTAAAAAGCAAATTTTATATT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGATCTCTCTACTAAGGACTTACGAGTTTAAAAAGCAAATTTTATATT  650

seq1  TAAGATACTGTTCTTCTTGGGCT-GGACAGATGGCTCAGCGGTT-AAGAG  698
      ||||||||||||||||||||||| |||||||||||||||||||| |||||
seq2  TAAGATACTGTTCTTCTTGGGCTGGGACAGATGGCTCAGCGGTTAAAGAG  700

seq1  CATTGACTGCTCTTCCGAAGGCCCTGAGTTCAAATCCC-AGCAACCACAT  747
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  CATTGACTGCTCTTCCGAAGGCCCTGAGTTCAAATCCCAAGCAACCACAT  750

seq1  GGTGGCTCACAACCATC-TGTAATGACATCTGACTCCCTCTGCTGGTG-T  795
      ||||||||||||||||| |||||||||||||||||||||||||||||| |
seq2  GGTGGCTCACAACCATCTTGTAATGACATCTGACTCCCTCTGCTGGTGTT  800

seq1  TTCTGAAGACAGCTACAGTGTAC-TTACAAAATAAATCTTTAAAAAAAAA  844
      ||||||||||||||||||||||| |||||||||||||||||  |||||||
seq2  TTCTGAAGACAGCTACAGTGTACTTTACAAAATAAATCTTT-TAAAAAAA  849

seq1  ATTTAAAAAAAAAGGA-TACCG-TTCTTTTTGAGTCTCCTTTATAGCAT-  891
      |||||||||||||||| ||||| ||| |||||||||||||||||||||| 
seq2  ATTTAAAAAAAAAGGATTACCGTTTCATTTTGAGTCTCCTTTATAGCATC  899

seq1  AGAACCAGGAGAATTATATATATGTAT-TTTTCTTTCTGAGAGGGTTTCT  940
      |||||||||||||||||  | ||| || | | ||||||||||||||||||
seq2  AGAACCAGGAGAATTATTAAAATGGATCTCTCCTTTCTGAGAGGGTTTCT  949

seq1  CTCTGTAGTGGCCCT-GAC-TTTTCTAGAACTCAC-TCTGTAGACCTTCC  987
      ||||| ||||||| | ||| |||||||||| |||| ||||||||| ||||
seq2  CTCTGAAGTGGCCTTGGACTTTTTCTAGAATTCACTTCTGTAGACATTCC  999

seq1  -TGGC  991
       ||||
seq2  GTGGC  1004

seq1: chr11_75697587_75698751
seq2: B6Ng01-328D18.g_75_1224 (reverse)

seq1  CACTTCTACAGTTCAGCCACATTGGATTTCCACTAGGGCCCAGTCCTTGC  50
      ||||| |||||||||| ||||||||| |||||||| || ||||| | |||
seq2  CACTT-TACAGTTCAG-CACATTGGA-TTCCACTAAGGACCAGTTC-TGC  46

seq1  TCTGTCTCT-GTCCTGGGATCCCACTGTGCTGCAGCCTTACTGGGATGCA  99
      ||||| ||| ||||| ||||||||||||||||||| | ||||||||||||
seq2  TCTGT-TCTCGTCCT-GGATCCCACTGTGCTGCAGGC-TACTGGGATGCA  93

seq1  TCTGACCACGCGGTCTTCCTCACTGGCCTAGATGTCCTTTAGACTCGAGG  149
      ||||| ||||| ||||  ||||||| | |||||||||||||||||||| |
seq2  TCTGA-CACGC-GTCT--CTCACTGACTTAGATGTCCTTTAGACTCGA-G  138

seq1  CAGAAGTGCCACTTCTTCGAGGCAGGCTTCTCTTGCCTTACCCAGTAGCC  199
      |||||||| ||| |||||||||||||||||||||||| ||||||||||||
seq2  CAGAAGTGGCAC-TCTTCGAGGCAGGCTTCTCTTGCC-TACCCAGTAGCC  186

seq1  ACTTCAATTGCAGGCACTTGCCTCTTCTTCCCGACTGTCCAGGTTATGTT  249
      |||||||||||||||||||||||| |||||||||||||||||| ||||||
seq2  ACTTCAATTGCAGGCACTTGCCTC-TCTTCCCGACTGTCCAGG-TATGTT  234

seq1  TTGATTCTCCAATGCGTGTGAAGGACCATGGCCACTGTCCCCACCAGGCT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATTCTCCAATGCGTGTGAAGGACCATGGCCACTGTCCCCACCAGGCT  284

seq1  GTCAGCAGGGCAGAGGCCATGCCTGTTGTTGCCCACTTTCCTCTTCTTGG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGCAGGGCAGAGGCCATGCCTGTTGTTGCCCACTTTCCTCTTCTTGG  334

seq1  TGCCCATTACAATTATCAGCAGAAAGCACAAAGGAAGAAAGGGGAGCCCT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCCATTACAATTATCAGCAGAAAGCACAAAGGAAGAAAGGGGAGCCCT  384

seq1  GTCTAGTACTATAACCAAAAAAGGTGAGATGTGTTCCCCTTGGAATGTGC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTAGTACTATAACCAAAAAAGGTGAGATGTGTTCCCCTTGGAATGTGC  434

seq1  CCAAGTGCTGGGAGGTAACACACAGACACACACTTAGCAGCATGAGCCTG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGTGCTGGGAGGTAACACACAGACACACACTTAGCAGCATGAGCCTG  484

seq1  GTCCATGCCAAGTGGTTCTGATGAGTGGGATGCTGGGACGGAGGTTAGAC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCATGCCAAGTGGTTCTGATGAGTGGGATGCTGGGACGGAGGTTAGAC  534

seq1  TGAGGAGAGGCATACACAGTGCATAGTGTGGGGTCCCCAGAGGAGTTGTA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGAGAGGCATACACAGTGCATAGTGTGGGGTCCCCAGAGGAGTTGTA  584

seq1  CTACTGGCTTGGGGAGGCGCTTATTCTTAAGGAATGAAACATGGGGCCAG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTGGCTTGGGGAGGCGCTTATTCTTAAGGAATGAAACATGGGGCCAG  634

seq1  CAGGGCAGGCCTCAGAAATGACATAAAACATCCTTTGATAAAGGCAGGCA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGCAGGCCTCAGAAATGACATAAAACATCCTTTGATAAAGGCAGGCA  684

seq1  GCAGAGATGTCCATCTTACCCTCACATGAGCACCCCTGGGGTGCATCCTG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAGATGTCCATCTTACCCTCACATGAGCACCCCTGGGGTGCATCCTG  734

seq1  TAGGCTGCCTGTGTGTGGAATACCTCTTTTAAGGCTGGAAACAGTGTCCC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGCTGCCTGTGTGTGGAATACCTCTTTTAAGGCTGGAAACAGTGTCCC  784

seq1  CCAAAATGTCCTCATAACACCTACTTCAGTTATGCTGCCCAGGAAGCCAA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAATGTCCTCATAACACCTACTTCAGTTATGCTGCCCAGGAAGCCAA  834

seq1  GGCCACATGTCCCCTACCCAGACCACAGCCAAGAGCCCGAGAGCCTGACA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCACATGTCCCCTACCCAGACCACAGCCAAGAGCCCGAGAGCCTGACA  884

seq1  AAAGGCCCCCGAGGGGCAGGCAATGGAGTTCAATTGGCAGAGCCTTGGAT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGCCCCCGAGGGGCAGGCAATGGAGTTCAATTGGCAGAGCCTTGGAT  934

seq1  TCCATCCCACACTGCATAATCCAGGGGTAGTGGACCACTCCGATAATTCA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATCCCACACTGCATAATCCAGGGGTAGTGGACCACTCCGATAATTCA  984

seq1  GCTCTCCGCAAACAGGCAGGGAACTGGGGACTTAGGAGAATCTTCAGCTA  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTCCGCAAACAGGCAGGGAACTGGGGACTTAGGAGAATCTTCAGCTA  1034

seq1  CATGGTAGGACAACTCAGGCCACACAAGACTGGGTCTCAAAAATAAATGT  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGTAGGACAACTCAGGCCACACAAGACTGGGTCTCAAAAATAAATGT  1084

seq1  ATAAATTAAAAGGCTTATCTTAAAGCCAGAGAGATCAAAACCCAGGTGCC  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAATTAAAAGGCTTATCTTAAAGCCAGAGAGATCAAAACCCAGGTGCC  1134

seq1  TTTGCCTAACTCCCCA  1165
      ||||||||||||||||
seq2  TTTGCCTAACTCCCCA  1150