BAC Information

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BAC

Clone NameB6Ng01-328O06
Chromosome11 (Build37)
Map Location 4,554,396 - 4,690,681
singlet/doubletdoublet
Overlap geneAscc2, 1110020P15Rik, Zmat5, Cabp7, Nf2
Upstream geneMorc2a, LOC664900, Osbp2, LOC664920, 4921536K21Rik, Dusp18, Slc35e4, Tcn2, LOC100041720, Pes1, Gal3st1, Sec14l4, Sec14l3, 1700020C11Rik, Sec14l2, LOC625729, Rnf215, 4930562D19Rik, Sf3a1, Tbc1d10a, 2410008K03Rik, LOC625760, Osm, Lif, Hormad2, Mtmr3, LOC100041006, OTTMUSG00000005065
Downstream geneNipsnap1, Thoc5, Nefh, Ap1b1, Rasl10a, Gas2l1, Ewsr1, Rhbdd3, Emid1, Kremen1, Znrf3, LOC100042016, LOC382478, Xbp1, Ccdc117, LOC100041183, Ankrd36, LOC665181, Mrps24, 2010005J08Rik, 2210015D19Rik, Dbnl
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-328O06.bB6Ng01-328O06.g
ACCGA116028GA116029
length1,1921,145
definitionB6Ng01-328O06.b B6Ng01-328O06.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(4,554,396 - 4,555,584)(4,689,520 - 4,690,681)
sequence
gaattctctgcatgaggagccatctctctggcccagtttttgtattttgg
gtttttgttgttgtgttgtttttggataaaaagcaagagagatcttcatt
ctcattgaaatcagataaagaagaggaaaagagactcagaagactttgat
cccagcacttggaaggcagaggcaggtgaatctctgtgagtttgaggaca
tcctggcctacaaagcaagttttaagacagccagggctgttacacagaga
aaccttgttttaaaaaaacaaaggaaaaaaaggaggaagaaatttgagtt
atcttgatgcttgagaaaaaatctttttctggcaggcaatgagggaatgt
ctacctcatcctgggtggtcaggatagcaagaggggtgtgtcatggcccc
agggtgcctgcttctgcactgtgcagaggaggtgacacatatcttaaaat
gggatgaactctggaagatcatttcaggaggacgggacagggctgttgtc
tgaggttatggatgcctctgattagatccaagggcgggctctgatgcgtg
gagtggaagccgggtgctctcgtgtgccagcaggggctagatttcttagg
acttaccgtattaaagtcagttcagactagccctagaggatcagggtatt
ctttgcctctgtggagggtggtgtagatggtccaggcacaccttcatcga
ttacagggaggtaagagcattgacctaaggaggctgggctagaaaaactc
agctttttggaaccaaggagtaaatggcatctaggagtgtgctgatggaa
agcccagctccttgctaactcattagcctcacctggcattctaaccttca
tgttgaccttccttccctgggctggactagggctgcagggctgtcagaac
tggatgctctggccctcatacacactgcaggagagaaacagacaggcaga
gggaaagactccttggctatatctctttgaattcacccttttgctcttct
taaataaggactgaatctaaacattgtttggtgcttacataaaaaggcag
accttctttagaagacagagaggctcaagctggccaccagcctgaaaggc
aagactatgggtgagcttgagacatctcagccttcagcctggcatttctc
attgtccatgtccttcagccaggaccttctctgtcctctcct
gaattcattatatagccaaggataaccttgaactcttgatatcctccctg
cttcattttacaagtggttgcataaaaggcatacctgcctgccataccca
gcctaccttgtatttgattctctagcactgcaagaaaatactctctagac
agcttcaaagagtgggcagtgggcattacacctctgcttttggattactg
acttaaagggacagaacagagtttaaattgaatattccctcacaagcata
acttcagctaaaatacattttatacataggtgcttttttttctttttccc
atggtggagcctgcagagccctgctgagtgtgtagcatatcatctgttgt
cagacagactgggagtctctcagtgggaaagcacagtgaggttaagactg
gctcttgggggctggagagagggctcggagttcaagagctctgactgctc
ttccatagtacccaagattcccagtacccacttggcagctcaccaccttc
tgtaactccagccccaggagatctgatggcctcttctggcttctaaagtt
actgcatctgcatgcacaggtgcacaaacatttatgcaggcaaggtacct
atatacataaaaataaaagttaaaaaaaaaaaacatgcttaggttttaca
tgggtgctggggatgcaaaccctggttttgttgccctgtgctgggaggcc
agatgtgggagacaggagtgtatactgtgtgagactactctccccacatg
gagataggcactgggccagcactagctgaaacactttccttcccagatgc
gctctgaggagacagctgatctgttggctgaaaggctcagatcacagagg
aggaggccaagcttttggcacaaaaggctgcagaggctgagcaagagatg
cagcgaatcaaggccacggccattcggacagaggaggagaagcgcctgat
ggagcagaagtgctggagctgaagtgctggcattgaagaatgctgagagt
cagagaggaggtgaatagtgttgtctgggccactggactggaaagggtat
aatgcctgctcacctaccagagctgttgtagcatctcatcttctctatgt
gggaaccagaactgtaaaacctcttctggacagctggtgggattg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_4554396_4555584
seq2: B6Ng01-328O06.b_47_1238

seq1  GAATTCTCTGCATGAGGAGCCATCTCTCTGGCCCAGTTTTTGTATTTTGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTGCATGAGGAGCCATCTCTCTGGCCCAGTTTTTGTATTTTGG  50

seq1  GTTTTTGTTGTTGTGTTGTTTTTGGATAAAAAGCAAGAGAGATCTTCATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTTGTTGTTGTGTTGTTTTTGGATAAAAAGCAAGAGAGATCTTCATT  100

seq1  CTCATTGAAATCAGATAAAGAAGAGGAAAAGAGACTCAGAAGACTTTGAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATTGAAATCAGATAAAGAAGAGGAAAAGAGACTCAGAAGACTTTGAT  150

seq1  CCCAGCACTTGGAAGGCAGAGGCAGGTGAATCTCTGTGAGTTTGAGGACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGCACTTGGAAGGCAGAGGCAGGTGAATCTCTGTGAGTTTGAGGACA  200

seq1  TCCTGGCCTACAAAGCAAGTTTTAAGACAGCCAGGGCTGTTACACAGAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGGCCTACAAAGCAAGTTTTAAGACAGCCAGGGCTGTTACACAGAGA  250

seq1  AACCTTGTTTTAAAAAAACAAAGGAAAAAAAGGAGGAAGAAATTTGAGTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTTGTTTTAAAAAAACAAAGGAAAAAAAGGAGGAAGAAATTTGAGTT  300

seq1  ATCTTGATGCTTGAGAAAAAATCTTTTTCTGGCAGGCAATGAGGGAATGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTGATGCTTGAGAAAAAATCTTTTTCTGGCAGGCAATGAGGGAATGT  350

seq1  CTACCTCATCCTGGGTGGTCAGGATAGCAAGAGGGGTGTGTCATGGCCCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACCTCATCCTGGGTGGTCAGGATAGCAAGAGGGGTGTGTCATGGCCCC  400

seq1  AGGGTGCCTGCTTCTGCACTGTGCAGAGGAGGTGACACATATCTTAAAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTGCCTGCTTCTGCACTGTGCAGAGGAGGTGACACATATCTTAAAAT  450

seq1  GGGATGAACTCTGGAAGATCATTTCAGGAGGACGGGACAGGGCTGTTGTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGATGAACTCTGGAAGATCATTTCAGGAGGACGGGACAGGGCTGTTGTC  500

seq1  TGAGGTTATGGATGCCTCTGATTAGATCCAAGGGCGGGCTCTGATGCGTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGTTATGGATGCCTCTGATTAGATCCAAGGGCGGGCTCTGATGCGTG  550

seq1  GAGTGGAAGCCGGGTGCTCTCGTGTGCCAGCAGGGGCTAGATTTCTTAGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGGAAGCCGGGTGCTCTCGTGTGCCAGCAGGGGCTAGATTTCTTAGG  600

seq1  ACTTACCGTATTAAAGTCAGTTCAGACTAGCCCTAGAGGATCAGGGTATT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTACCGTATTAAAGTCAGTTCAGACTAGCCCTAGAGGATCAGGGTATT  650

seq1  CTTTGCCTCTGTGGAGGGTGGTGTAGATGGTCCAGGCACACCTTCATCGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGCCTCTGTGGAGGGTGGTGTAGATGGTCCAGGCACACCTTCATCGA  700

seq1  TTACAGGGAGGTAAGAGCATTGACCTAAGGAGGCTGGGCTAGAAAAACTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACAGGGAGGTAAGAGCATTGACCTAAGGAGGCTGGGCTAGAAAAACTC  750

seq1  AGCTTTTTGGAACCAAGGAGTAAATGGCATCTAGGAGTGTGCTGATGGAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTTTTGGAACCAAGGAGTAAATGGCATCTAGGAGTGTGCTGATGGAA  800

seq1  AGCCCAGCTCCTTGCTAACTCATTAGCCTCACCTGGCATTCTAACCTTCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCAGCTCCTTGCTAACTCATTAGCCTCACCTGGCATTCTAACCTTCA  850

seq1  TGTTGACCTTCCTTCCCTGGGCTGGACTAGGGCTGCAGGGCTGTCAGAAC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGACCTTCCTTCCCTGGGCTGGACTAGGGCTGCAGGGCTGTCAGAAC  900

seq1  TGGATGCTCTGGCCCTCATACACACTGCAGGAGAGAAACAGACAGGCAGA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATGCTCTGGCCCTCATACACACTGCAGGAGAGAAACAGACAGGCAGA  950

seq1  GGGAAAGACTCCTTGGCTATATCTCTTTGAATTCACCC-TTTGCTCTTCT  999
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  GGGAAAGACTCCTTGGCTATATCTCTTTGAATTCACCCTTTTGCTCTTCT  1000

seq1  TAAAT-AGGACTGAAATCTAAACATTGTTTGGTGCTTACATAAAAA-GCA  1047
      ||||| ||||||| |||||||||||||||||||||||||||||||| |||
seq2  TAAATAAGGACTG-AATCTAAACATTGTTTGGTGCTTACATAAAAAGGCA  1049

seq1  GACC-TCTTTAG-AGACAGAGAGGCTCAAAGCTGGCCACCAGCCTGAGAG  1095
      |||| ||||||| |||||||||||||| ||||||||||||||||||| ||
seq2  GACCTTCTTTAGAAGACAGAGAGGCTC-AAGCTGGCCACCAGCCTGAAAG  1098

seq1  GCAAGACCTAT-GGTGAGC-TGAGACATCTCAGGCCTCCAGCCCTGGCAT  1143
      |||||| |||| ||||||| |||||||||||| |||| ||| ||||||||
seq2  GCAAGA-CTATGGGTGAGCTTGAGACATCTCA-GCCTTCAG-CCTGGCAT  1145

seq1  TTCTCATTGT-CATGTCCTTCAGCAAGGACCCCTTCTCTCGTCTCCT  1189
      |||||||||| ||||||||||||| ||||||   ||| || ||||||
seq2  TTCTCATTGTCCATGTCCTTCAGCCAGGACCTTCTCTGTCCTCTCCT  1192

seq1: chr11_4689520_4690681
seq2: B6Ng01-328O06.g_67_1211 (reverse)

seq1  CAATCCCACCAGCCTGTCAAGGAAGAGGTTTTACAG-TCT-GTTCCCACA  48
      |||||||||||| ||||| | ||||||||||||||| ||| |||||||| 
seq2  CAATCCCACCAG-CTGTCCA-GAAGAGGTTTTACAGTTCTGGTTCCCAC-  47

seq1  ATAGAGAAGGATGAAGATGCTACCACCAGCTCTGGTAGGGTTGAAACCAG  98
      |||||||| |||| |||||||| || |||||||||||||  ||  | |||
seq2  ATAGAGAA-GATG-AGATGCTA-CAACAGCTCTGGTAGG--TG--AGCAG  90

seq1  GCATATAACCCTTTCCCAGGTCCCAGTGCCCAGGACAACCAACTATTCAC  148
      ||||   ||||||| ||||   |||||| ||  ||||||  |||||||||
seq2  GCATTATACCCTTT-CCAG--TCCAGTGGCCCAGACAAC--ACTATTCAC  135

seq1  CTCCTCTCTGACTCCTCAGCCATCTTCAATGCCAGCACTTCAGCCTCCAG  198
      ||||||||||||| ||||||  ||||||||||||||||||||| ||||||
seq2  CTCCTCTCTGACT-CTCAGCATTCTTCAATGCCAGCACTTCAG-CTCCAG  183

seq1  CACCTTCTGCTCCATCAGGCGCTTCTCCTCCTCTGTCCGAATGGCCGTGG  248
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  CA-CTTCTGCTCCATCAGGCGCTTCTCCTCCTCTGTCCGAATGGCCGTGG  232

seq1  CCTTGATTCGCTGCATCTCTTGCTCAGCCTCTGCAGCCTTTTGTGCCAAA  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGATTCGCTGCATCTCTTGCTCAGCCTCTGCAGCCTTTTGTGCCAAA  282

seq1  AGCTTGGCCTCCTCCTCTGTGATCTGAGCCTTTTCAGCCAACAGATCAGC  348
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  AGCTTGGCCTCCTCCTCTGTGATCTGAGCC-TTTCAGCCAACAGATCAGC  331

seq1  TGTCTCCTCAGAGCGCATCTGGGAAGGAAAGTGTTTCAGCTAGTGCTGGC  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTCCTCAGAGCGCATCTGGGAAGGAAAGTGTTTCAGCTAGTGCTGGC  381

seq1  CCAGTGCCTATCTCCATGTGGGGAGAGTAGTCTCACACAGTATACACTCC  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTGCCTATCTCCATGTGGGGAGAGTAGTCTCACACAGTATACACTCC  431

seq1  TGTCTCCCACATCTGGCCTCCCAGCACAGGGCAACAAAACCAGGGTTTGC  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTCCCACATCTGGCCTCCCAGCACAGGGCAACAAAACCAGGGTTTGC  481

seq1  ATCCCCAGCACCCATGTAAAACCTAAGCATGTTTTTTTTTTTTAACTTTT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCCAGCACCCATGTAAAACCTAAGCATGTTTTTTTTTTTTAACTTTT  531

seq1  ATTTTTATGTATATAGGTACCTTGCCTGCATAAATGTTTGTGCACCTGTG  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTATGTATATAGGTACCTTGCCTGCATAAATGTTTGTGCACCTGTG  581

seq1  CATGCAGATGCAGTAACTTTAGAAGCCAGAAGAGGCCATCAGATCTCCTG  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCAGATGCAGTAACTTTAGAAGCCAGAAGAGGCCATCAGATCTCCTG  631

seq1  GGGCTGGAGTTACAGAAGGTGGTGAGCTGCCAAGTGGGTACTGGGAATCT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTGGAGTTACAGAAGGTGGTGAGCTGCCAAGTGGGTACTGGGAATCT  681

seq1  TGGGTACTATGGAAGAGCAGTCAGAGCTCTTGAACTCCGAGCCCTCTCTC  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTACTATGGAAGAGCAGTCAGAGCTCTTGAACTCCGAGCCCTCTCTC  731

seq1  CAGCCCCCAAGAGCCAGTCTTAACCTCACTGTGCTTTCCCACTGAGAGAC  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCCCCAAGAGCCAGTCTTAACCTCACTGTGCTTTCCCACTGAGAGAC  781

seq1  TCCCAGTCTGTCTGACAACAGATGATATGCTACACACTCAGCAGGGCTCT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAGTCTGTCTGACAACAGATGATATGCTACACACTCAGCAGGGCTCT  831

seq1  GCAGGCTCCACCATGGGAAAAAGAAAAAAAAGCACCTATGTATAAAATGT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGCTCCACCATGGGAAAAAGAAAAAAAAGCACCTATGTATAAAATGT  881

seq1  ATTTTAGCTGAAGTTATGCTTGTGAGGGAATATTCAATTTAAACTCTGTT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTAGCTGAAGTTATGCTTGTGAGGGAATATTCAATTTAAACTCTGTT  931

seq1  CTGTCCCTTTAAGTCAGTAATCCAAAAGCAGAGGTGTAATGCCCACTGCC  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCCCTTTAAGTCAGTAATCCAAAAGCAGAGGTGTAATGCCCACTGCC  981

seq1  CACTCTTTGAAGCTGTCTAGAGAGTATTTTCTTGCAGTGCTAGAGAATCA  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCTTTGAAGCTGTCTAGAGAGTATTTTCTTGCAGTGCTAGAGAATCA  1031

seq1  AATACAAGGTAGGCTGGGTATGGCAGGCAGGTATGCCTTTTATGCAACCA  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACAAGGTAGGCTGGGTATGGCAGGCAGGTATGCCTTTTATGCAACCA  1081

seq1  CTTGTAAAATGAAGCAGGGAGGATATCAAGAGTTCAAGGTTATCCTTGGC  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTAAAATGAAGCAGGGAGGATATCAAGAGTTCAAGGTTATCCTTGGC  1131

seq1  TATATAATGAATTC  1162
      ||||||||||||||
seq2  TATATAATGAATTC  1145