BAC Information

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BAC

Clone NameB6Ng01-328O16
Chromosome11 (Build37)
Map Location 36,561,193 - 36,617,664
singlet/doubletdoublet
Overlap geneOdz2
Upstream genePank3, LOC666733, AI595406, Rars, Wwc1, LOC636532
Downstream geneLOC100039148
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-328O16.bB6Ng01-328O16.g
ACCGA116044GA116045
length1,185734
definitionB6Ng01-328O16.b B6Ng01-328O16.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(36,561,193 - 36,562,392)(36,616,933 - 36,617,664)
sequence
gaattcaatgaagtgatgtgaagtggctaaacggatggttttaaagactt
cttctgtttttctactctcgcttacattaatgatgggatttggactccag
aaaatggaagagaaggcaggcaacccttaagcatcatcataccaaatgaa
ttccatcactgcaaatgtgactggattgctcagtcttatttactaagagt
agttttacatataacttcagatatcagtgtattggtaacagcaaaatacc
aagttactttccttcactgattggcactgacctgtggtccaggtgttttt
gtttccagcctgaactaaaaaactaagcttcacagttaggtgtagttaga
tcaatcctttctaaattatgtacagtgcgggcatcccagaagaatcataa
agatgttcacaaatagggagaaagagtgagtgcaactgcgtacattcact
agctcagctatcattattctgaccatatgctaataacccagtcagtttcc
tggagtctaaaaatctctcctagagcatctaagaagaacaccacacacta
gcaataagaacacaggatggaaccactactgtataccaaagaattcatgt
cctcaaccagccactctggtattgtcatttctgtctgacacgaatgcctc
ttttcacttttcccatgaataagtgcccctcagaagtctgcagcctgatt
ttaaccatcagttccctataagaaattattttttgtccaagatctaactt
ttcttaccacctccttcattatccctcacagaatctgtgaaaacaagtca
tttcaaagctttccggggtctgaactttctgtctgcctccttcatgtttc
tgatgggggttgatacatttatttaggaaatgcagagtttttggtatgga
tgaataatgaataaatgaaagctcagttcatgtcacacccatgtcatacg
tgtcttagacatgtctagattatatttacatgaacttttttttctacaca
tatttactctacactttaaatggcctccctctctgtagctttgcatgagg
gctgaccgacaagcatgtttttcctgttcccactattttttcccataatt
ttttgaaatacctagtttcaacagtaattggcaagaactaggtagtagta
aacaatacaacagttctctgcctctttgtgtgaag

gaattccacactcctgtccatttccagggagtgatcactatcaggaatct
acctccatttcctataggcactttacctggattttctttgcctcgatatt
gtgacattcttcaaatatgtaaatgttatgcagttaatatcctatttcaa
aaagataactcctgtttaatgtctaatcttggtcacatagctagcatgct
tatttctcacttacctcataaattgttttatacacaaacatagctgcatg
tacatatacttactggagattagatacagtagacttagacacagtgagtg
gattttagaatctttttttttaacctaagactaaagcatcatatgtgtaa
ctaagtaaactgcagaaacccctcagtaaactccattcattctctactgt
acaaagtgagaacagcaaattctaaggggtgtgttacagtgtggattaaa
cagagaaatgtgtgtaaaaatcaaggtattccaagcgcagactcatccta
gatgtctgtcagtgtatgaagagaatgggtgtgtatgtgtatgtgtgtgt
gtgagagagagacagacagccatgtagacagacatacagagacagagaca
cagagagacagcgaaacagagagaaagaggtgaaggatgagattttctga
atgaagaaaattatctttttcaggaaatgtgtgagaatggtggtttttcc
ataacccaaagtaagacagagtggaagcagcaat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_36561193_36562392
seq2: B6Ng01-328O16.b_47_1231

seq1  GAATTCAATGAAGTGATGTGAAGTGGCTAAACGGATGGTTTTAAAGACTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAATGAAGTGATGTGAAGTGGCTAAACGGATGGTTTTAAAGACTT  50

seq1  CTTCTGTTTTTCTACTCTCGCTTACATTAATGATGGGATTTGGACTCCAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTGTTTTTCTACTCTCGCTTACATTAATGATGGGATTTGGACTCCAG  100

seq1  AAAATGGAAGAGAAGGCAGGCAACCCTTAAGCATCATCATACCAAATGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATGGAAGAGAAGGCAGGCAACCCTTAAGCATCATCATACCAAATGAA  150

seq1  TTCCATCACTGCAAATGTGACTGGATTGCTCAGTCTTATTTACTAAGAGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCATCACTGCAAATGTGACTGGATTGCTCAGTCTTATTTACTAAGAGT  200

seq1  AGTTTTACATATAACTTCAGATATCAGTGTATTGGTAACAGCAAAATACC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTTACATATAACTTCAGATATCAGTGTATTGGTAACAGCAAAATACC  250

seq1  AAGTTACTTTCCTTCACTGATTGGCACTGACCTGTGGTCCAGGTGTTTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTACTTTCCTTCACTGATTGGCACTGACCTGTGGTCCAGGTGTTTTT  300

seq1  GTTTCCAGCCTGAACTAAAAAACTAAGCTTCACAGTTAGGTGTAGTTAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCCAGCCTGAACTAAAAAACTAAGCTTCACAGTTAGGTGTAGTTAGA  350

seq1  TCAATCCTTTCTAAATTATGTACAGTGCGGGCATCCCAGAAGAATCATAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATCCTTTCTAAATTATGTACAGTGCGGGCATCCCAGAAGAATCATAA  400

seq1  AGATGTTCACAAATAGGGAGAAAGAGTGAGTGCAACTGCGTACATTCACT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGTTCACAAATAGGGAGAAAGAGTGAGTGCAACTGCGTACATTCACT  450

seq1  AGCTCAGCTATCATTATTCTGACCATATGCTAATAACCCAGTCAGTTTCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCAGCTATCATTATTCTGACCATATGCTAATAACCCAGTCAGTTTCC  500

seq1  TGGAGTCTAAAAATCTCTCCTAGAGCATCTAAGAAGAACACCACACACTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGTCTAAAAATCTCTCCTAGAGCATCTAAGAAGAACACCACACACTA  550

seq1  GCAATAAGAACACAGGATGGAACCACTACTGTATACCAAAGAATTCATGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAATAAGAACACAGGATGGAACCACTACTGTATACCAAAGAATTCATGT  600

seq1  CCTCAACCAGCCACTCTGGTATTGTCATTTCTGTCTGACACGAATGCCTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCAACCAGCCACTCTGGTATTGTCATTTCTGTCTGACACGAATGCCTC  650

seq1  TTTTCACTTTTCCCATGAATAAGTGCCCCTCAGAAGTCTGCAGCCTGATT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCACTTTTCCCATGAATAAGTGCCCCTCAGAAGTCTGCAGCCTGATT  700

seq1  TTAACCATCAGTTCCCTATAAGAAATTATTTTTTGTCCAAGATCTAACTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACCATCAGTTCCCTATAAGAAATTATTTTTTGTCCAAGATCTAACTT  750

seq1  TTCTTACCACCTCCTTCATTATCCCTCACAGAATCTGTGAAAACAAGTCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTACCACCTCCTTCATTATCCCTCACAGAATCTGTGAAAACAAGTCA  800

seq1  TTTCAAAGCTTTCCGGGGTCTGAACTTTCTGTCTGCCTCCTTCATGTTTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAAAGCTTTCCGGGGTCTGAACTTTCTGTCTGCCTCCTTCATGTTTC  850

seq1  TGATGGGGGTTGATACATTTATTTAGGAAATGCAGAGTTTTTGGTATGGA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGGGGGTTGATACATTTATTTAGGAAATGCAGAGTTTTTGGTATGGA  900

seq1  TGAATAATGAATAAATGAAAGCTCAGTTCATGTCACACCCATGTCATACG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATAATGAATAAATGAAAGCTCAGTTCATGTCACACCCATGTCATACG  950

seq1  TGTCTTAGGACATGTCTAGATTATATTTACATGAACTTTTTTTTCTAACA  1000
      ||||||| |||||||||||||||||||||||||||||||||||||||   
seq2  TGTCTTA-GACATGTCTAGATTATATTTACATGAACTTTTTTTTCTA--C  997

seq1  ACATATTTACTCTACACTTTAAATGGCCTCCCTCTCTGTTAGCTTTTGCA  1050
      |||||||||||||||||||||||||||||||||||||| |||| ||||||
seq2  ACATATTTACTCTACACTTTAAATGGCCTCCCTCTCTG-TAGC-TTTGCA  1045

seq1  TGAGGGCTGACCGACAAAGCAATGTTTTTCCTTGTTCCCACTATTTTTTT  1100
      ||||||||||||||| |||| |||||||||| ||||||||||||||||| 
seq2  TGAGGGCTGACCGAC-AAGC-ATGTTTTTCC-TGTTCCCACTATTTTTTC  1092

seq1  TCTCTATATATTTTTTTGAAATACCTAGTTTTCAACAGTAAATTTGCAAA  1150
       |     ||| ||||||||||||||||| ||||||||||||  |||  ||
seq2  CC-----ATAATTTTTTGAAATACCTAG-TTTCAACAGTAA--TTGGCAA  1134

seq1  GAACTAAGTAGTAGTTTATACCATCACACA-TTCTCTG-CTC-TTGTGTG  1197
      |||||| |||||||  || || ||   ||| ||||||| ||| |||||||
seq2  GAACTAGGTAGTAG--TAAACAATACAACAGTTCTCTGCCTCTTTGTGTG  1182

seq1  AAG  1200
      |||
seq2  AAG  1185


seq1: chr11_36616933_36617664
seq2: B6Ng01-328O16.g_68_800 (reverse)

seq1  TTGCTGCCT-CACTCTGTCTTACTTTGGTTAATGTGAAAACCACCATTCT  49
      ||||||| | |||||||||||||||||| | |||  ||||||||||||||
seq2  TTGCTGCTTCCACTCTGTCTTACTTTGGGTTATGGAAAAACCACCATTCT  50

seq1  CACACATTTCCTTGAAAATGACTAATTTCTTCATTCAG-AAATCTCATCC  98
      ||||||||||| |||||| ||  | ||||||||||||| |||||||||||
seq2  CACACATTTCC-TGAAAAAGATAATTTTCTTCATTCAGAAAATCTCATCC  99

seq1  TTCACCTCTTTCTCTCTGTTTCGCTGTCTCTCTGTGTCTCTGTCTCTGTC  148
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  TTCACCTCTTTCTCTCTGTTTCGCTGTCTCTCTGTGTCTCTGTCTCTGTA  149

seq1  TGTCTGTCTACATGGCTGTCTGTCTCTCTCTCACACACACACATACACAT  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTGTCTACATGGCTGTCTGTCTCTCTCTCACACACACACATACACAT  199

seq1  ACACACCCATTCTCTTCATACACTGACAGACATCTAGGATGAGTCTGCGC  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACCCATTCTCTTCATACACTGACAGACATCTAGGATGAGTCTGCGC  249

seq1  TTGGAATACCTTGATTTTTACACACATTTCTCTGTTTAATCCACACTGTA  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGAATACCTTGATTTTTACACACATTTCTCTGTTTAATCCACACTGTA  299

seq1  ACACACCCCTTAGAATTTGCTGTTCTCACTTTGTACAGTAGAGAATGAAT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACCCCTTAGAATTTGCTGTTCTCACTTTGTACAGTAGAGAATGAAT  349

seq1  GGAGTTTACTGAGGGGTTTCTGCAGTTTACTTAGTTACACATATGATGCT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGTTTACTGAGGGGTTTCTGCAGTTTACTTAGTTACACATATGATGCT  399

seq1  TTAGTCTTAGGTTAAAAAAAAAGATTCTAAAATCCACTCACTGTGTCTAA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTCTTAGGTTAAAAAAAAAGATTCTAAAATCCACTCACTGTGTCTAA  449

seq1  GTCTACTGTATCTAATCTCCAGTAAGTATATGTACATGCAGCTATGTTTG  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTACTGTATCTAATCTCCAGTAAGTATATGTACATGCAGCTATGTTTG  499

seq1  TGTATAAAACAATTTATGAGGTAAGTGAGAAATAAGCATGCTAGCTATGT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATAAAACAATTTATGAGGTAAGTGAGAAATAAGCATGCTAGCTATGT  549

seq1  GACCAAGATTAGACATTAAACAGGAGTTATCTTTTTGAAATAGGATATTA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCAAGATTAGACATTAAACAGGAGTTATCTTTTTGAAATAGGATATTA  599

seq1  ACTGCATAACATTTACATATTTGAAGAATGTCACAATATCGAGGCAAAGA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCATAACATTTACATATTTGAAGAATGTCACAATATCGAGGCAAAGA  649

seq1  AAATCCAGGTAAAGTGCCTATAGGAAATGGAGGTAGATTCCTGATAGTGA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCCAGGTAAAGTGCCTATAGGAAATGGAGGTAGATTCCTGATAGTGA  699

seq1  TCACTCCCTGGAAATGGACAGGAGTGTGGAATTC  732
      ||||||||||||||||||||||||||||||||||
seq2  TCACTCCCTGGAAATGGACAGGAGTGTGGAATTC  733


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