BAC Information

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BAC

Clone NameB6Ng01-330I15
Chromosome11 (Build37)
Map Location 70,584,458 - 70,765,192
singlet/doubletdoublet
Overlap geneZfp3, A430084P05Rik, Rabep1, LOC668461, Nup88
Upstream geneZbtb4, Chrnb1, Fgf11, Tmem102, 4933402P03Rik, 1700095G12Rik, Nlgn2, 1810027O10Rik, Plscr3, Tnk1, LOC432576, Kctd11, Centb1, 2810408A11Rik, 0610025P10Rik, Gps2, Eif5a, Ybx2, Slc2a4, LOC668442, Cldn7, Rai12, Dullard, Gabarap, Phf23, Dvl2, Acadvl, Dlg4, Asgr1, Asgr2, Mgl2, Mgl1, Slc16a11, Slc16a13, Bcl6b, 0610010K14Rik, D11Bwg0434e, Alox12, Alox12e, Alox15, LOC668466, Pelp1, Arrb2, Med11, Cxcl16, Zmynd15, Tm4sf5, Vmo1, C730027E14Rik, Psmb6, Pld2, Mink1, Chrne, LOC668433, Gp1ba, Slc25a11, Rnf167, Pfn1, Eno3, Spag7, Camta2, AI842396, Kif1c, LOC668488
Downstream geneRpain, C1qbp, Dhx33, Derl2, Mis12, 6330403K07Rik, LOC382536, Nlrp1a, Nlrp1b, Nlrp1c, LOC100043249, 9230020A06Rik, Wscd1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-330I15.bB6Ng01-330I15.g
ACCGA117175GA117176
length1,2701,171
definitionB6Ng01-330I15.b B6Ng01-330I15.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(70,763,929 - 70,765,192)(70,584,458 - 70,585,622)
sequence
gaattcaagccaggtactgatggcacacacctttaatcccagcacttggg
aggcagaggcaggcagatttctgagttcgaggccagcctggtctacaaag
tgagttccaggacagccagggctacacagagaaaccctttctcggaaaac
caagagaggaagagagaatgaatggaattcagattaaaaactttcaagtc
cctgacaacagtgcacaactgtgaaaatcctgtagacagtgggtttcatc
accatgtgtttgtaagccactggggtaaattcttcttgtttcctagttgc
tatctttgtatctttgatggtctcacttgcagatcccaagtgtccttcga
gataccactgcagccatgaagctggcgtgcacagtgtggggctgacttgg
attcacaaactgcacaaatttcttggatcgggtgagttactaagtttctg
tatttcccagtaagtttcagagattctgacaaagtgtagtttggagaagc
aaacattagaatcagtgaacctaagcgttctttagaaggctcattttcag
agctgatgaacctttagccagacagaccaaatactagaacaaaaaaaccc
taaaattactatagtcagaaaacataggcagattactattaagcctatag
aaattaggaggcctaggtaaaatggatggacttcagaactgactggaatg
ccctaaaccaagtgactttacatttaaaatgttgattctccatgagcttc
tcccaaaaaaacagtactgttaacctcaacctgtgataccaaagccaagc
aaaataatcaaactatagtcagtgttaagaacaatcaaagagcctgaata
tggctcaatggtaggtcattcgcctacatgaagactgactgatcctccac
actacgtaaaacaacaaaatcaacaaactagttttagaaaggaattttgt
cagcaaataaagagcacttatgcaaacctgacagcgacacctgaatggca
gctgaaatgttttccgttttgatatattttattttttgagactcgtccat
gcaggtgttattttgatcaatattccactcccctccaccacacacggttt
cctaacctcttcctcagatccaatttctctcaggccctaagcccccttcc
caaactgtcgtatctttttttcaaatggcctaaggtccaattggtgctgc
tgattccaatggatatggaaccagtgcatatggaagtctcatcttccggg
ggagcaccaccacactatga
gaattctcctgtaactgacagtgccacacagctcctgccagcatctctgc
actgcacacttcctgttgctatcagatgttctgtctcttatgggtttttc
tcactcctttaggtcagcagcagtctgccattgcctcactggcaggactg
tctttgggtcttaccaatgccatgtccaggccctgtgtccccacctgcag
tgtcatttagataggacagagcagcctcacatgagtaccctctcttcttt
cagattgtgatatggggactgagaaaaaggagggacttcccaaggaagaa
acttctgaagactccaagccacatgggcaaacagtagaaaaacttgcaca
ggaggtttgccatggccatgagtttggagaagcaagcgaggaagacatgt
cagagggacatttgagagagtcctcgaaagagattatagaaaaaaggtat
cctcaggagagacactttgcatctgggttacttatcttcaagaagtcgtc
ctcaggtgagaaaaccagtgagaatccgagaggctttaatcctaacccta
gtgtattgtgtcatggaggtgctgagagggccagcgcatgtgctgcctct
ggccacaactgcctggggagtatagagcttactaaagctcaggggcctcc
tgtgggagagaagcctcacacgtgtaaagagtgcgggaaagcttttaatc
agaactcacatctcatccagcatatgagagtccatagcggagaaaaaccc
ttcgaatgcaaagagtgtggaaagaccttcgggactaactccagccttcg
aaggcaccagagaattcacgccggagagaaaccctttgcttgcactgagt
gtggcaaggccttcattcagagctcacatctgattcaccatcacagaatc
catactgggagaaagaccttataaatgtgaagagtgtggtaaagcccttc
agtcagaactcagcctcttattcttgcacagagatccacactggagagga
aaccttattgagtgtacgaagtggtgggagaccttcccgggtttagcttc
acagctcattcagccatccggaagaatttcacaccagagggaaagataca
cgagtgcaggtgagggcgccaggcttcagtccagctcggcctcatctgac
atcaaaatcaaccgggagaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_70763929_70765192
seq2: B6Ng01-330I15.b_48_1317 (reverse)

seq1  TCATAGTGT-GTGG----CTCCCGGGAGATGAGCATGCCCTATGCA-TGG  44
      ||||||||| ||||    | ||||| |||||||  | || |||||| |||
seq2  TCATAGTGTGGTGGTGCTCCCCCGGAAGATGAGACTTCCATATGCACTGG  50

seq1  TACCATATACATGAGAATACAGGCAGCA-CAATGTGAACTTAGGCCATTA  93
      | |||||| |||  |||| || |||||| ||||  || ||||||||||| 
seq2  TTCCATATCCATTGGAAT-CA-GCAGCACCAATTGGACCTTAGGCCATT-  97

seq1  AAAAAAAAAAAAAAAAAAAAAGACAGTT--GGGAGGGGGCTTAGGGCTTG  141
               ||||||| | | |||||||  || |||||||||||||| ||
seq2  -------TGAAAAAAAGATACGACAGTTTGGGAAGGGGGCTTAGGGCCTG  140

seq1  AG---AAATGGATCTGA-GAAGAGTTAAGGAAACCGTGTGT-GTG--AGG  184
      ||   || ||||||||| |||||| | |||||||||||||| |||   ||
seq2  AGAGAAATTGGATCTGAGGAAGAGGTTAGGAAACCGTGTGTGGTGGAGGG  190

seq1  GAGTGG-ATA-TGATCAAAAT-ACACCTGCATGGACGAGTCTCAAAAAAT  231
      |||||| ||| |||||||||| ||||||||||||||||||||||||||||
seq2  GAGTGGAATATTGATCAAAATAACACCTGCATGGACGAGTCTCAAAAAAT  240

seq1  AAATATAT-TCAAAACGGAAAACATTTCAGCCTGCCATTCAGGTGTTCGC  280
      ||| |||| ||||||||||||||||||||| |||||||||||||| ||||
seq2  AAA-ATATATCAAAACGGAAAACATTTCAG-CTGCCATTCAGGTG-TCGC  287

seq1  TGTCAGGTTTGCATAAGTGCTCTTTATTTGCCTGACAAAATTCCTTTCTA  330
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  TGTCAGGTTTGCATAAGTGCTCTTTATTTG-CTGACAAAATTCCTTTCTA  336

seq1  AAACTAGTTTGTTGATTTTGTTGTTTTACGTAGTGTGGAGGATCAGTCAG  380
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTAGTTTGTTGATTTTGTTGTTTTACGTAGTGTGGAGGATCAGTCAG  386

seq1  TCTTCATGTAGGCGAATGACCTACCATTGAGCCATATTCAGGCTCTTTGA  430
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCATGTAGGCGAATGACCTACCATTGAGCCATATTCAGGCTCTTTGA  436

seq1  TTGTTCTTAACACTGACTATAGTTTGATTATTTTGCTTGGCTTTGGTATC  480
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTCTTAACACTGACTATAGTTTGATTATTTTGCTTGGCTTTGGTATC  486

seq1  ACAGGTTGAGGTTAACAGTACTGTTTTTTTGGGAGAAGCTCATGGAGAAT  530
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGTTGAGGTTAACAGTACTGTTTTTTTGGGAGAAGCTCATGGAGAAT  536

seq1  CAACATTTTAAATGTAAAGTCACTTGGTTTAGGGCATTCCAGTCAGTTCT  580
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACATTTTAAATGTAAAGTCACTTGGTTTAGGGCATTCCAGTCAGTTCT  586

seq1  GAAGTCCATCCATTTTACCTAGGCCTCCTAATTTCTATAGGCTTAATAGT  630
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTCCATCCATTTTACCTAGGCCTCCTAATTTCTATAGGCTTAATAGT  636

seq1  AATCTGCCTATGTTTTCTGACTATAGTAATTTTAGGGTTTTTTTGTTCTA  680
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTGCCTATGTTTTCTGACTATAGTAATTTTAGGGTTTTTTTGTTCTA  686

seq1  GTATTTGGTCTGTCTGGCTAAAGGTTCATCAGCTCTGAAAATGAGCCTTC  730
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTTGGTCTGTCTGGCTAAAGGTTCATCAGCTCTGAAAATGAGCCTTC  736

seq1  TAAAGAACGCTTAGGTTCACTGATTCTAATGTTTGCTTCTCCAAACTACA  780
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGAACGCTTAGGTTCACTGATTCTAATGTTTGCTTCTCCAAACTACA  786

seq1  CTTTGTCAGAATCTCTGAAACTTACTGGGAAATACAGAAACTTAGTAACT  830
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGTCAGAATCTCTGAAACTTACTGGGAAATACAGAAACTTAGTAACT  836

seq1  CACCCGATCCAAGAAATTTGTGCAGTTTGTGAATCCAAGTCAGCCCCACA  880
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCGATCCAAGAAATTTGTGCAGTTTGTGAATCCAAGTCAGCCCCACA  886

seq1  CTGTGCACGCCAGCTTCATGGCTGCAGTGGTATCTCGAAGGACACTTGGG  930
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGCACGCCAGCTTCATGGCTGCAGTGGTATCTCGAAGGACACTTGGG  936

seq1  ATCTGCAAGTGAGACCATCAAAGATACAAAGATAGCAACTAGGAAACAAG  980
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGCAAGTGAGACCATCAAAGATACAAAGATAGCAACTAGGAAACAAG  986

seq1  AAGAATTTACCCCAGTGGCTTACAAACACATGGTGATGAAACCCACTGTC  1030
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAATTTACCCCAGTGGCTTACAAACACATGGTGATGAAACCCACTGTC  1036

seq1  TACAGGATTTTCACAGTTGTGCACTGTTGTCAGGGACTTGAAAGTTTTTA  1080
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGGATTTTCACAGTTGTGCACTGTTGTCAGGGACTTGAAAGTTTTTA  1086

seq1  ATCTGAATTCCATTCATTCTCTCTTCCTCTCTTGGTTTTCCGAGAAAGGG  1130
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGAATTCCATTCATTCTCTCTTCCTCTCTTGGTTTTCCGAGAAAGGG  1136

seq1  TTTCTCTGTGTAGCCCTGGCTGTCCTGGAACTCACTTTGTAGACCAGGCT  1180
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTCTGTGTAGCCCTGGCTGTCCTGGAACTCACTTTGTAGACCAGGCT  1186

seq1  GGCCTCGAACTCAGAAATCTGCCTGCCTCTGCCTCCCAAGTGCTGGGATT  1230
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTCGAACTCAGAAATCTGCCTGCCTCTGCCTCCCAAGTGCTGGGATT  1236

seq1  AAAGGTGTGTGCCATCAGTACCTGGCTTGAATTC  1264
      ||||||||||||||||||||||||||||||||||
seq2  AAAGGTGTGTGCCATCAGTACCTGGCTTGAATTC  1270

seq1: chr11_70584458_70585622
seq2: B6Ng01-330I15.g_68_1238

seq1  GAATTCTCCTGTAACTGACAGTGCCACACAGCTCCTGCCAGCATCTCTGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCCTGTAACTGACAGTGCCACACAGCTCCTGCCAGCATCTCTGC  50

seq1  ACTGCACACTTCCTGTTGCTATCAGATGTTCTGTCTCTTATGGGTTTTTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCACACTTCCTGTTGCTATCAGATGTTCTGTCTCTTATGGGTTTTTC  100

seq1  TCACTCCTTTAGGTCAGCAGCAGTCTGCCATTGCCTCACTGGCAGGACTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTCCTTTAGGTCAGCAGCAGTCTGCCATTGCCTCACTGGCAGGACTG  150

seq1  TCTTTGGGTCTTACCAATGCCATGTCCAGGCCCTGTGTCCCCACCTGCAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTGGGTCTTACCAATGCCATGTCCAGGCCCTGTGTCCCCACCTGCAG  200

seq1  TGTCATTTAGATAGGACAGAGCAGCCTCACATGAGTACCCTCTCTTCTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCATTTAGATAGGACAGAGCAGCCTCACATGAGTACCCTCTCTTCTTT  250

seq1  CAGATTGTGATATGGGGACTGAGAAAAAGGAGGGACTTCCCAAGGAAGAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATTGTGATATGGGGACTGAGAAAAAGGAGGGACTTCCCAAGGAAGAA  300

seq1  ACTTCTGAAGACTCCAAGCCACATGGGCAAACAGTAGAAAAACTTGCACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCTGAAGACTCCAAGCCACATGGGCAAACAGTAGAAAAACTTGCACA  350

seq1  GGAGGTTTGCCATGGCCATGAGTTTGGAGAAGCAAGCGAGGAAGACATGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGTTTGCCATGGCCATGAGTTTGGAGAAGCAAGCGAGGAAGACATGT  400

seq1  CAGAGGGACATTTGAGAGAGTCCTCGAAAGAGATTATAGAAAAAAGGTAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGGGACATTTGAGAGAGTCCTCGAAAGAGATTATAGAAAAAAGGTAT  450

seq1  CCTCAGGAGAGACACTTTGCATCTGGGTTACTTATCTTCAAGAAGTCGTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCAGGAGAGACACTTTGCATCTGGGTTACTTATCTTCAAGAAGTCGTC  500

seq1  CTCAGGTGAGAAAACCAGTGAGAATCCGAGAGGCTTTAATCCTAACCCTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGGTGAGAAAACCAGTGAGAATCCGAGAGGCTTTAATCCTAACCCTA  550

seq1  GTGTATTGTGTCATGGAGGTGCTGAGAGGGCCAGCGCATGTGCTGCCTCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTATTGTGTCATGGAGGTGCTGAGAGGGCCAGCGCATGTGCTGCCTCT  600

seq1  GGCCACAACTGCCTGGGGAGTATAGAGCTTACTAAAGCTCAGGGGCCTCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCACAACTGCCTGGGGAGTATAGAGCTTACTAAAGCTCAGGGGCCTCC  650

seq1  TGTGGGAGAGAAGCCTCACACGTGTAAAGAGTGCGGGAAAGCTTTTAATC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGGAGAGAAGCCTCACACGTGTAAAGAGTGCGGGAAAGCTTTTAATC  700

seq1  AGAACTCACATCTCATCCAGCATATGAGAGTCCATAGCGGAGAAAAACCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACTCACATCTCATCCAGCATATGAGAGTCCATAGCGGAGAAAAACCC  750

seq1  TTCGAATGCAAAGAGTGTGGAAAGACCTTCGGGACTAACTCCAGCCTTCG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCGAATGCAAAGAGTGTGGAAAGACCTTCGGGACTAACTCCAGCCTTCG  800

seq1  AAGGCACCAGAGAATTCACGCCGGAGAGAAACCCTTTGCTTGCACTGAGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCACCAGAGAATTCACGCCGGAGAGAAACCCTTTGCTTGCACTGAGT  850

seq1  GTGGCAAGGCCTTCATTCAGAGCTCACATCTGATTCACCATCACAGAATC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGCAAGGCCTTCATTCAGAGCTCACATCTGATTCACCATCACAGAATC  900

seq1  CATACT-GGAGAAAGACCTTATAAATGTGAAGAGTGTGGTAAAG-CCTTC  948
      |||||| ||||||||||||||||||||||||||||||||||||| |||||
seq2  CATACTGGGAGAAAGACCTTATAAATGTGAAGAGTGTGGTAAAGCCCTTC  950

seq1  AGTCAGAACTCAGCC-CTTATTC-TGCACCAGAGAATCCACACTGGAGA-  995
      ||||||||||||||| ||||||| |||| ||||| |||||||||||||| 
seq2  AGTCAGAACTCAGCCTCTTATTCTTGCA-CAGAG-ATCCACACTGGAGAG  998

seq1  GAAACCCTA-TGAGTGTAACGAGTGTGGGAAGACCTTCC--GGGTTAGC-  1041
      |||||| || ||||||||   ||||  || |||||||||  || ||||| 
seq2  GAAACCTTATTGAGTGTACGAAGTGGTGGGAGACCTTCCCGGGTTTAGCT  1048

seq1  TCACAGCTCATCCAG-CATCAG--AGAA-TTCACA-CAGA-GGAAAGATA  1085
      ||||||||||| ||| |||| |  |||| |||||| |||| |||||||||
seq2  TCACAGCTCATTCAGCCATCCGGAAGAATTTCACACCAGAGGGAAAGATA  1098

seq1  CCACGAGTGCA-GTGAGTGCGGCAAAGCCTTCAAGCACAGCTCCGGCCTC  1134
       |||||||||| ||||| ||| |  || |||| ||  ||||| |||||||
seq2  -CACGAGTGCAGGTGAGGGCGCC--AGGCTTC-AGTCCAGCT-CGGCCTC  1143

seq1  ATCAGACATCAGAAAATCCACACGGGAGAAA  1165
      ||| ||||||  |||||| || |||||||||
seq2  ATCTGACATC--AAAATCAAC-CGGGAGAAA  1171