BAC Information

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BAC

Clone NameB6Ng01-330P22
Chromosome11 (Build37)
Map Location 67,967,246 - 68,096,166
singlet/doubletdoublet
Overlap geneStx8, Ntn1
Upstream geneMyh2, Myh1, Myh4, Myh8, Myh13, Gas7, Rcvrn, Glp2r, LOC544792, Dhrs7c, LOC100041899, Usp43, Wdr16
Downstream genePik3r5, BB220380, BC024997, Ccdc42, Myh10, Ndel1, 9930039A11Rik, Rpl26, Odf4, Arhgef15, Slc25a35, 2400006H24Rik, Pfas, 1500010J02Rik, Aurkb, 2310047M10Rik, Tmem107, Vamp2, Per1, Hes7, Aloxe3, Alox12b, Alox8, Gucy2e
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-330P22.bB6Ng01-330P22.g
ACCGA117483GA117484
length1,1241,067
definitionB6Ng01-330P22.b B6Ng01-330P22.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(68,095,058 - 68,096,166)(67,967,246 - 67,968,291)
sequence
gaattctcttagcaattctataaagaacacaggcaagtttctcaaaagaa
ctgctccagagaggaaggaaaaaatgaagccaactgcctattgattcatc
catccatccattcatccatccatccaagtattcagtctcacggtggctga
aggacagaggaggggctctggggctaagaccagggcttctgacaagacca
tgaccagatgatcttcctgttttcatggacaggccagagtccgggaaatt
ttggagtggcagggtcaggatgaagtgctcctgggtgctttctggactgg
gatagtcttggtaggcgtgtgacttagtttttgaggtgtttgggtagaga
attgatacatctatgtttttgtcaactcatcgaattgctgagacttggtt
ctctgtgttcagagccctggggagagtctgtggtgtgtagatgagggttc
ttctcactgaagtacagaagtctatttacatgggattaaattgcttaatc
aacacaaaaagatgcgtttaaattagttcagagtgaaaatacaggaaaac
tacaagactatgcctttagaatgagggccagacagcaaatcctcttgatc
ctgtctatctacctatctactttctaacctttctatctgtacccatccat
ttagctacctcacctagcaatccacttatccatctatctgcccaccctac
ctacctttccctctatctatttttatccaccaattcatctcagtcattca
tcctgtgggtccatccatcagactgttcctctatttccccatcttcccca
tccatccacctaatcacccagtcagttactcctcccacccacaccaatcc
attatccgcggtttcactattctatacatgcatgtgtgtgtcttctttct
tgagtgttaagcttttctctcaattgtacaacaaaaaactgttaaatcaa
aggcttgctgtgggctttctccatgtcatccccagtgaagtaataaaaat
tgattaagagcatctggcccacttgaattcaatgtgaaatttctgatggg
gtctgctcttcaggctggccatttcctctgttaaagaggagcccacttgg
gtggttgtaaagcatatcttgtct
gaattcatttgttttgttttttatttatattctaatttatttaatttttg
ttactgggataaagattatgatcaaaagtaacttccggaggaattatgaa
ggtcacagatttttttttttttttttttttttttaaagaaaatgcttcac
agccatgcctacagaccaatctggcctgggcagttcttcactggggtccc
tcttcccaggtgaccccaggtgagtccattgtcagctgaagctaattcga
cagactcagtgcatttcctgtggattcccacaggaaagagatcccctttg
cacacctgctgagtgtgtgcctgagtttgtggtccgctgtctgcagtttt
cctacaggtgttcccttccaaacctctcttccaatctgaaatgcagccca
cccctgctcacctttcagagctatgtggtgtttctagccactgttattct
ctgtctgtgtgctcattctgtttctctgatcccatatctttttgcagttt
ttcaaaacctcatttaattgaaatatgttctcaaccttgttttgattttt
aaagagggtgtgttagagtggtgaaccttccgaatgcttacatactagaa
aaaaaaaccttccatcctcttatcagacattctcctaatatttcttttct
gctttagtttaatttgggaagacggagctaggacttcatatatactaagc
acgttgtctaccaaggacctatacccccagctataagagatctttttttt
tttagtaaaaatcattgttttataggcatagtattttttgtacatatatt
tttcaagaatacctaattggctgtgggctacagagaatgggttcagcagc
taagagcattttactgattctttgcaaagggacctgggtttgggtttgcc
cagccacccttaacacacatataggtacacatacatatttaaacacctaa
ataataaattccccaaagaatactaacctagcggatgttgtctggtttac
caggttcatcctgtggttagaaataatttctgtattcctagactagtctt
tctctgctctttgggtt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_68095058_68096166
seq2: B6Ng01-330P22.b_51_1174 (reverse)

seq1  AGACAGGATATACTTT-CAACCACCCAAGT-GGCTCCTCCTTTAACAGAG  48
      ||||| ||||| |||| ||||||||||||| ||||||| |||||||||||
seq2  AGACAAGATATGCTTTACAACCACCCAAGTGGGCTCCT-CTTTAACAGAG  49

seq1  GAAATGGCCAGCCCTGAGGAGCAGA-CCCATCAGAA--TTCACATTGA--  93
      ||||||||||| ||||| ||||||| ||||||||||  ||||||||||  
seq2  GAAATGGCCAG-CCTGAAGAGCAGACCCCATCAGAAATTTCACATTGAAT  98

seq1  TCAAGTGGGCCAGATGCTCTTAATCAA-TTTTATTACTTCACTGGGGATG  142
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  TCAAGTGGGCCAGATGCTCTTAATCAATTTTTATTACTTCACTGGGGATG  148

seq1  ACATGGAG-AAGCCCACAGCAAGCC-TTGATT--ACAG-TTTTTGTTGTA  187
      |||||||| |||||||||||||||| ||||||  |||| |||||||||||
seq2  ACATGGAGAAAGCCCACAGCAAGCCTTTGATTTAACAGTTTTTTGTTGTA  198

seq1  CAATTGAGAG-AAAGC-TAACACTCAAGAAAGAAGACACACACATGCATG  235
      |||||||||| ||||| |||||||||||||||||||||||||||||||||
seq2  CAATTGAGAGAAAAGCTTAACACTCAAGAAAGAAGACACACACATGCATG  248

seq1  TATAGAATAGTG-AACCGCGGATAATGGATTGGTGTGGGTGGGAGGAGTA  284
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  TATAGAATAGTGAAACCGCGGATAATGGATTGGTGTGGGTGGGAGGAGTA  298

seq1  ACTGACT-GGTGATTAGGTGGATGGATGGGGAAGATGGGGAAATAGAGGA  333
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGACTGGGTGATTAGGTGGATGGATGGGGAAGATGGGGAAATAGAGGA  348

seq1  ACAGTCTGATGGATGGACCCACAGGATGAATGACTGAGATGAATTGGTGG  383
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTCTGATGGATGGACCCACAGGATGAATGACTGAGATGAATTGGTGG  398

seq1  ATAAAAATAGATAGAGGGAAAGGTAGGTAGGGTGGGCAGATAGATGGATA  433
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAAATAGATAGAGGGAAAGGTAGGTAGGGTGGGCAGATAGATGGATA  448

seq1  AGTGGATTGCTAGGTGAGGTAGCTAAATGGATGGGTACAGATAGAAAGGT  483
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGATTGCTAGGTGAGGTAGCTAAATGGATGGGTACAGATAGAAAGGT  498

seq1  TAGAAAGTAGATAGGTAGATAGACAGGATCAAGAGGATTTGCTGTCTGGC  533
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAAGTAGATAGGTAGATAGACAGGATCAAGAGGATTTGCTGTCTGGC  548

seq1  CCTCATTCTAAAGGCATAGTCTTGTAGTTTTCCTGTATTTTCACTCTGAA  583
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCATTCTAAAGGCATAGTCTTGTAGTTTTCCTGTATTTTCACTCTGAA  598

seq1  CTAATTTAAACGCATCTTTTTGTGTTGATTAAGCAATTTAATCCCATGTA  633
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATTTAAACGCATCTTTTTGTGTTGATTAAGCAATTTAATCCCATGTA  648

seq1  AATAGACTTCTGTACTTCAGTGAGAAGAACCCTCATCTACACACCACAGA  683
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGACTTCTGTACTTCAGTGAGAAGAACCCTCATCTACACACCACAGA  698

seq1  CTCTCCCCAGGGCTCTGAACACAGAGAACCAAGTCTCAGCAATTCGATGA  733
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCCCCAGGGCTCTGAACACAGAGAACCAAGTCTCAGCAATTCGATGA  748

seq1  GTTGACAAAAACATAGATGTATCAATTCTCTACCCAAACACCTCAAAAAC  783
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGACAAAAACATAGATGTATCAATTCTCTACCCAAACACCTCAAAAAC  798

seq1  TAAGTCACACGCCTACCAAGACTATCCCAGTCCAGAAAGCACCCAGGAGC  833
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTCACACGCCTACCAAGACTATCCCAGTCCAGAAAGCACCCAGGAGC  848

seq1  ACTTCATCCTGACCCTGCCACTCCAAAATTTCCCGGACTCTGGCCTGTCC  883
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCATCCTGACCCTGCCACTCCAAAATTTCCCGGACTCTGGCCTGTCC  898

seq1  ATGAAAACAGGAAGATCATCTGGTCATGGTCTTGTCAGAAGCCCTGGTCT  933
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAAACAGGAAGATCATCTGGTCATGGTCTTGTCAGAAGCCCTGGTCT  948

seq1  TAGCCCCAGAGCCCCTCCTCTGTCCTTCAGCCACCGTGAGACTGAATACT  983
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCCCCAGAGCCCCTCCTCTGTCCTTCAGCCACCGTGAGACTGAATACT  998

seq1  TGGATGGATGGATGAATGGATGGATGGATGAATCAATAGGCAGTTGGCTT  1033
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATGGATGGATGAATGGATGGATGGATGAATCAATAGGCAGTTGGCTT  1048

seq1  CATTTTTTCCTTCCTCTCTGGAGCAGTTCTTTTGAGAAACTTGCCTGTGT  1083
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTTTCCTTCCTCTCTGGAGCAGTTCTTTTGAGAAACTTGCCTGTGT  1098

seq1  TCTTTATAGAATTGCTAAGAGAATTC  1109
      ||||||||||||||||||||||||||
seq2  TCTTTATAGAATTGCTAAGAGAATTC  1124

seq1: chr11_67967246_67968291
seq2: B6Ng01-330P22.g_71_1137

seq1  GAATTCATTTGTTTTGTTTTTTATTTATATTCTAATTTATTTAATTTTTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTTGTTTTGTTTTTTATTTATATTCTAATTTATTTAATTTTTG  50

seq1  TTACTGGGATAAAGATTATGATCAAAAGTAACTTCCGGAGGAATTATGAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTGGGATAAAGATTATGATCAAAAGTAACTTCCGGAGGAATTATGAA  100

seq1  GGTCACAGATTTTTTTTTTTTTTTTTTTTTTTTTAAAGAAAATGCTTCAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCACAGATTTTTTTTTTTTTTTTTTTTTTTTTAAAGAAAATGCTTCAC  150

seq1  AGCCATGCCTACAGACCAATCTGGCCTGGGCAGTTCTTCACTGGGGTCCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCATGCCTACAGACCAATCTGGCCTGGGCAGTTCTTCACTGGGGTCCC  200

seq1  TCTTCCCAGGTGACCCCAGGTGAGTCCATTGTCAGCTGAAGCTAATTCGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCCCAGGTGACCCCAGGTGAGTCCATTGTCAGCTGAAGCTAATTCGA  250

seq1  CAGACTCAGTGCATTTCCTGTGGATTCCCACAGGAAAGAGATCCCCTTTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACTCAGTGCATTTCCTGTGGATTCCCACAGGAAAGAGATCCCCTTTG  300

seq1  CACACCTGCTGAGTGTGTGCCTGAGTTTGTGGTCCGCTGTCTGCAGTTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACCTGCTGAGTGTGTGCCTGAGTTTGTGGTCCGCTGTCTGCAGTTTT  350

seq1  CCTACAGGTGTTCCCTTCCAAACCTCTCTTCCAATCTGAAATGCAGCCCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTACAGGTGTTCCCTTCCAAACCTCTCTTCCAATCTGAAATGCAGCCCA  400

seq1  CCCCTGCTCACCTTTCAGAGCTATGTGGTGTTTCTAGCCACTGTTATTCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTGCTCACCTTTCAGAGCTATGTGGTGTTTCTAGCCACTGTTATTCT  450

seq1  CTGTCTGTGTGCTCATTCTGTTTCTCTGATCCCATATCTTTTTGCAGTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCTGTGTGCTCATTCTGTTTCTCTGATCCCATATCTTTTTGCAGTTT  500

seq1  TTCAAAACCTCATTTAATTGAAATATGTTCTCAACCTTGTTTTGATTTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAAACCTCATTTAATTGAAATATGTTCTCAACCTTGTTTTGATTTTT  550

seq1  AAAGAGGGTGTGTTAGAGTGGTGAACCTTCCGAATGCTTACATACTAGAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAGGGTGTGTTAGAGTGGTGAACCTTCCGAATGCTTACATACTAGAA  600

seq1  AAAAAAACCTTCCATCCTCTTATCAGACATTCTCCTAATATTTCTTTTCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAACCTTCCATCCTCTTATCAGACATTCTCCTAATATTTCTTTTCT  650

seq1  GCTTTAGTTTAATTTGGGAAGACGGAGCTAGGACTTCATATATACTAAGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTAGTTTAATTTGGGAAGACGGAGCTAGGACTTCATATATACTAAGC  700

seq1  ACGTTGTCTACCAAGGACCTATACCCCCAGCTATAAGAGATC--TTTTTT  748
      ||||||||||||||||||||||||||||||||||||||||||  ||||||
seq2  ACGTTGTCTACCAAGGACCTATACCCCCAGCTATAAGAGATCTTTTTTTT  750

seq1  TTTAGT-AAAATCATTGTTTTATAGGCATAGTA-TTTTTGTACATATA-T  795
      |||||| |||||||||||||||||||||||||| |||||||||||||| |
seq2  TTTAGTAAAAATCATTGTTTTATAGGCATAGTATTTTTTGTACATATATT  800

seq1  TTTCAAG-ATA-CTAATTGGCTGTGGGCTACAGAGA--TGGTTCAGCAGC  841
      ||||||| ||| ||||||||||||||||||||||||   |||||||||||
seq2  TTTCAAGAATACCTAATTGGCTGTGGGCTACAGAGAATGGGTTCAGCAGC  850

seq1  TAAGAGCA-TTTACTGAT--CTTGCAAA-GGACCTGGG-TTGGGTT--GC  884
      |||||||| |||||||||   ||||||| ||||||||| |||||||   |
seq2  TAAGAGCATTTTACTGATTCTTTGCAAAGGGACCTGGGTTTGGGTTTGCC  900

seq1  CAG-CACCCTAAACACACATATA-GTACACATACATA-TTAAACA-CTAA  930
      ||| |||||| |||||||||||| ||||||||||||| ||||||| ||||
seq2  CAGCCACCCTTAACACACATATAGGTACACATACATATTTAAACACCTAA  950

seq1  ATAAATAAAT--CCCAAAGAATACTAA-CTAGCGATTGTTGTCTGGTTTA  977
      || |||||||  ||||||||||||||| ||||||  ||||||||||||||
seq2  AT-AATAAATTCCCCAAAGAATACTAACCTAGCGGATGTTGTCTGGTTTA  999

seq1  CAAGGTTTCATCCTGTTGTTAG-AATAATTTCTGTATCCCTAGAACTAGT  1026
      | ||| |||||||||| ||||| |||||||||||||| ||||| ||||||
seq2  CCAGG-TTCATCCTGTGGTTAGAAATAATTTCTGTATTCCTAG-ACTAGT  1047

seq1  C-TTCTCTGCTCCTTTGGGTT  1046
      | ||||||||| |||||||||
seq2  CTTTCTCTGCT-CTTTGGGTT  1067