BAC Information

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BAC

Clone NameB6Ng01-333D23
Chromosome11 (Build37)
Map Location 65,254,589 - 65,255,718
singlet/doubletsinglet
Overlap genenone
Upstream geneHs3st3a1, LOC626959, Elac2, AU040829, 1700086D15Rik, LOC100041790, Myocd
Downstream geneMap2k4, Zkscan6, Dnahc9, Gm879
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-333D23.bB6Ng01-333D23.g
ACCGA119114GA119115
length1,1231,154
definitionB6Ng01-333D23.b B6Ng01-333D23.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattccatgggacacaatgcacaggaacgattgtctatgaatacactct
tgctttctgtttccccagaactgagagagtttctcagagatgaaaacatt
ctattttgtaatgtagaagcaagaattactcggctctcctctagctttca
ttctttcctactgtgccctgtgcgaaagaactggttggaaaggattcatg
gaaaccagtatcatctgtgtaattagacaatccatccaagtacatacatt
agcacccaagacagtgtcctgagtgaccccgtccactgagtttccctctc
cttctgatgcaagacactgcagagtatgttagcctttgtctggataacat
ggccctcaagctcactcaacttgccagttcagcattatacctctcattta
ataaaagccaacatgctttggagtgagaggtatccagcactctttgtagc
aaacagtattgtctggctgatgcttaagaacaagcaattccaaatcctca
atgatctaaagcaacacttgcttaaactttcatgttctggggagcacggg
gaagacttgtttggttaagtggcaacagcgatacctgatgattcaagttt
ggctctctggtacctacataagaaagccaggtgtggcagcccgcatctgc
aatagtagctgggagggctgaaaacaggatgacccttagggcttgctgac
cagcctgtctatccccccaccccaaaaaaatgtaaggcagaaggctgggg
aaatggtttggtaggtaaagcacttaccttgaaaacatggggcctacatt
cagatccttggatgtagtggtaagttgggcacagtggcacatgtctgtac
cacatcgttcctccagtcagaggggaggtggaaagaggagcatccttaaa
gcttgcacggcagctagcctgtctacacagcggcaaacaaaagcctttgt
ctcaaaccaaaagaagggaaaacagaagagccagctcactccacctgtat
gctatgacatgagcagaccagtctccacacacacagaaatatgcacacag
gagtacacatattctttaaatttagaaaatgagccgggcggtggtgcaca
cgcctttattccagcactgggag

gaattccaagtttctctgtctaggatttttcccggatgatttgtctattg
gtgaaagctgggtattgattaaggtatttgacccagttcaactgattttt
gggaaggacaacatatatggatttgatttcagatttctgtaagtaggtat
ccagtcttgccaggaccatttgttgaataagttgattcctcccccacccc
tagtatatgtttttgttaaaaaaaattaggagtccatcaaagttggagtt
tacatatgggtcctgtattattttccattggtctatgtgtctgtttttgt
gaaaacaccactctctttttgtcactatggctctgtagtgtagtatgaag
tcggcaaagagatgcctctactgtatcttttctgtttagaattactttgg
ttatctatggttttctatttccaagtgagctgtaggatgtttgtatagtt
ttgtgaagaatatctttgaaattgtgatggagagcacattgaatctgtat
atttattgcttttggtaattaattctgtcagtccagcagtatggaagata
attctatcatctagtaatttctttaatttccttttcaacgtcttgaagga
cagttttcttcatagagatctttgatctctttggttagatttatttctag
attttttctaggctatcttgcatggcatatttctctcaatctctgaaaga
ttgttaattgatgtatataaaactaataactttcatttgttgattttgta
ttctgcaggtacactgaccaatgttccttagattaaaagttttttttgat
agagcctgtaatataattaagtacaaaatcatgtcatatgcaaataggga
tagtctaacttctcctttaaaacttttataccttttatatattttaaatt
attaccctagctgagagttttatactatatagatagagtagacacagtga
gcatctgactagtttgggatttttcagaatggtctaggttttctgtccgg
atgatgaatataacatttgtaataaaattagcttaattgggtgagaatgt
gtggtgatactttcttaggattgaatataggtcatggaattcatcaattc
ttcgcacttacagattacatgaattcagcttcgaattgaagctgaaggct
atcg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_65254589_65255718
seq2: B6Ng01-333D23.b_46_1168

seq1  GAATTCCATGGGACACAATGCACAGGAACGATTGTCTATGAATACACTCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATGGGACACAATGCACAGGAACGATTGTCTATGAATACACTCT  50

seq1  TGCTTTCTGTTTCCCCAGAACTGAGAGAGTTTCTCAGAGATGAAAACATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTTCTGTTTCCCCAGAACTGAGAGAGTTTCTCAGAGATGAAAACATT  100

seq1  CTATTTTGTAATGTAGAAGCAAGAATTACTCGGCTCTCCTCTAGCTTTCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTTTGTAATGTAGAAGCAAGAATTACTCGGCTCTCCTCTAGCTTTCA  150

seq1  TTCTTTCCTACTGTGCCCTGTGCGAAAGAACTGGTTGGAAAGGATTCATG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTCCTACTGTGCCCTGTGCGAAAGAACTGGTTGGAAAGGATTCATG  200

seq1  GAAACCAGTATCATCTGTGTAATTAGACAATCCATCCAAGTACATACATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACCAGTATCATCTGTGTAATTAGACAATCCATCCAAGTACATACATT  250

seq1  AGCACCCAAGACAGTGTCCTGAGTGACCCCGTCCACTGAGTTTCCCTCTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACCCAAGACAGTGTCCTGAGTGACCCCGTCCACTGAGTTTCCCTCTC  300

seq1  CTTCTGATGCAAGACACTGCAGAGTATGTTAGCCTTTGTCTGGATAACAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTGATGCAAGACACTGCAGAGTATGTTAGCCTTTGTCTGGATAACAT  350

seq1  GGCCCTCAAGCTCACTCAACTTGCCAGTTCAGCATTATACCTCTCATTTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCCTCAAGCTCACTCAACTTGCCAGTTCAGCATTATACCTCTCATTTA  400

seq1  ATAAAAGCCAACATGCTTTGGAGTGAGAGGTATCCAGCACTCTTTGTAGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAAGCCAACATGCTTTGGAGTGAGAGGTATCCAGCACTCTTTGTAGC  450

seq1  AAACAGTATTGTCTGGCTGATGCTTAAGAACAAGCAATTCCAAATCCTCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAGTATTGTCTGGCTGATGCTTAAGAACAAGCAATTCCAAATCCTCA  500

seq1  ATGATCTAAAGCAACACTTGCTTAAACTTTCATGTTCTGGGGAGCACGGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATCTAAAGCAACACTTGCTTAAACTTTCATGTTCTGGGGAGCACGGG  550

seq1  GAAGACTTGTTTGGTTAAGTGGCAACAGCGATACCTGATGATTCAAGTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGACTTGTTTGGTTAAGTGGCAACAGCGATACCTGATGATTCAAGTTT  600

seq1  GGCTCTCTGGTACCTACATAAGAAAGCCAGGTGTGGCAGCCCGCATCTGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCTCTGGTACCTACATAAGAAAGCCAGGTGTGGCAGCCCGCATCTGC  650

seq1  AATAGTAGCTGGGAGGGCTGAAAACAGGATGACCCTTAGGGCTTGCTGAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGTAGCTGGGAGGGCTGAAAACAGGATGACCCTTAGGGCTTGCTGAC  700

seq1  CAGCCTGTCTATCCCCCCACCCCAAAAAAATGTAAGGCAGAAGGCTGGGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCTGTCTATCCCCCCACCCCAAAAAAATGTAAGGCAGAAGGCTGGGG  750

seq1  AAATGGTTTGGTAGGTAAAGCACTTACCTTGAAAACATGGGGCCTACATT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGGTTTGGTAGGTAAAGCACTTACCTTGAAAACATGGGGCCTACATT  800

seq1  CAGATCCTTGGATGTAGTGGTAAGTTGGGCACAGTGGCACATGTCTGTAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATCCTTGGATGTAGTGGTAAGTTGGGCACAGTGGCACATGTCTGTAC  850

seq1  CACATCGTTCCTCCAGTCAGAGGGGAGGTGGAAAGAGGAGCATCCTTAAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATCGTTCCTCCAGTCAGAGGGGAGGTGGAAAGAGGAGCATCCTTAAA  900

seq1  GCTTGCACGGCAGCTAGCCTGTCTACACAGCGGCAAACAAAAGCCTTTGT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGCACGGCAGCTAGCCTGTCTACACAGCGGCAAACAAAAGCCTTTGT  950

seq1  CTCAAACCAAAAGAAAGGAAAACAGAAAGAGCCAGCTCACCTCCACCTGT  1000
      ||||||||||||||| ||||||||| ||||||||||||| ||||||||||
seq2  CTCAAACCAAAAGAAGGGAAAACAG-AAGAGCCAGCTCA-CTCCACCTGT  998

seq1  ATGCTATGACATGAGCAGACCAGTCTCCACACACACAGAAATATGCACAC  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTATGACATGAGCAGACCAGTCTCCACACACACAGAAATATGCACAC  1048

seq1  AGGAGTACACATATCTTTTAAAATTTAGAAAAATGAGCCGGGCGGTGGTG  1100
      |||||||||||||| | || |||||||| |||||||||||||||||||| 
seq2  AGGAGTACACATAT-TCTTTAAATTTAG-AAAATGAGCCGGGCGGTGGT-  1095

seq1  GCACACGCCTTTAATCCCAGCACTTGGGAG  1130
      |||||||||||| || ||||||| ||||||
seq2  GCACACGCCTTT-ATTCCAGCAC-TGGGAG  1123


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