BAC Information

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BAC

Clone NameB6Ng01-337J11
Chromosome11 (Build37)
Map Location 61,559,009 - 61,742,135
singlet/doubletdoublet
Overlap genePrpsap2, Ulk2, Akap10
Upstream geneTop3a, LOC100042517, Smcr8, Shmt1, LOC625958, LOC637900, Dhrs7b, Tmem11, Gtlf3b, Map2k3, Kcnj12, LOC668228, Tnfrsf13b, Usp22, LOC668239, Aldh3a1, Aldh3a2, 4933429E10Rik, 1300013J15Rik, LOC100042602, LOC626150, Zfp179, Mfap4, Mapk7, 3110043A19Rik, Eppb9, Epn2, Grap, Slc5a10, 2310040C09Rik
Downstream geneD630015H07, LOC626325, LOC100041558, Specc1, Adora2b, 2410012H22Rik, Ttc19, Ncor1, Pigl, Prr6, Ubb, Trpv2, 2410006H16Rik, BC046404, BC025076, Zfp287, LOC626482, LOC100042766, Zfp286, Trim16, Fbxw10, Fam18b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-337J11.bB6Ng01-337J11.g
ACCGA122166GA122167
length1,1141,135
definitionB6Ng01-337J11.b B6Ng01-337J11.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(61,741,018 - 61,742,135)(61,559,009 - 61,560,130)
sequence
gaattcagtatgtaaccttgaaacgtaaaactagaggatcagtagtagaa
tgtaactttagagaggtcaggaaagacactggaggtaccaggaataaaga
gctggtgccctttaggaaaggcaaggtggccactgtggctgaggcataga
gaagcagataggcagacaccacattatcgagagttttattccaaatgcag
agagaatatattgtaaagcttttgaagagaggtgaccttacaataaaggg
tgatctgattatttgcttagaaagtttattctagagccagatgctcagca
gataaagacccttgctgtgcagcctaaccatcagagttagagccccagga
cccacaatggtggagggaaagagtaactcccattaagttgtcctctgacc
tccacacatgtgctgtgtggtacatccactcccacaaaataaataaatgt
acttaaggagtaaaaagattattccagatgatttctggagattgaatgtg
gcaagagagctagaaacaacctttttgaggggttgggagtcaagacagtc
tggctttgtagtcctggccttagcatttcctgttgagatggggaccttgt
ggacattcttcttcctctaatttagtatttggattataggcatgtatcac
cacacccaacctctgaaaacagcctcataaagatccttcaatttaatttt
ctttcttgttagaggtttatcatatttcattaaaaatggtaaatctaaaa
tcaggaaaagagggctggaggtggctcagcccttcagaacttatgttgtt
cttacacagaacctgggtttagttcccagaaccttcatggcagcttagaa
ccatctgtaactccaggtccagggactcccctactcttctctggcctcct
tggcacttggcatctacatgtatagatgtaggcaaaccactcacacacca
caacaaaatggaaacaatttgtaagattaccttagtgtttccccagttta
cctgtctatgtattttttcttttgagatatgcactttgtaatctactgtc
atgagttttgtctttttttaattttgatttcaaatcagtattttgatatg
gagtcataactagc
gaattccaggagagccagggctacacagagaaaccctgtcttgaaaaaaa
caaacaaacgaataagcaaatcaacaacaagcccttaaagtacagaaaca
gcagaaaatcttaacaaagaaatatttctacaagtgtttttacagctgat
tgtctctcctacaattttccttagcagggatgacaaaacccaacataaga
taccaagacctcttcacccacactgtgacatctgaaatgattaacagaaa
aaggtacgagaacattttagaagtagtgttgtccaaaagagtaaggagct
gaacctgtgtggtccatccaagcctataagagaaaggagaaagcgtccag
aagactcagtgagctagcctgtttcctctgtcaaagcttgttagtgtttc
aaaggggttcagtggttaataagtcaactagataggatttacagtcacct
agaggtgagtctgggagacacatgtgagtgatcagtgtctggcatgacta
tgagggttattttgattacactgaagcaagaagattcattgggccgggcg
tggtggtgcacgcctttaaccccagcactcgggaggcggaggcagaggca
ggcggacttctgagttcgaggccagcctggtctacaaagtgagttccagg
acgtcagagctatacagagaaatccttgtctcgaaaaaccaaaaaaaaaa
aaaaaaaaaaaagatgattcattgggtgacatcacacctgggctgatgtc
tgtgtgaataaggaggaaactagctgagcccagtatctgtccttcctccc
ttcctgactgaaagtgcagtatggaagggcccagctacctttacctttct
acgtgatggattgtacctcaactgggagtcagaataaacgttctctccct
ccaggtgtgtttggtcaggtgttctgtcacatcaataacataaaatacta
ctatggtttccccaggactgaagttgctaggtttatatttttttaagccg
tgtttttgtttctgcctttctttttaaagctatacttggaaatgttattt
ttctataagtgagttattctgtagagttgtgaccctggcaagtttcagtt
cctttgtctgtcaccaaacttctgtgaatgtatgc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_61741018_61742135
seq2: B6Ng01-337J11.b_43_1156 (reverse)

seq1  GCTAGTAATGACTTCATATCAAAATACTGATTTGAAAATTCAAAAATTAA  50
      |||||| |||||| |||||||||||||||||||||||  || ||||||||
seq2  GCTAGTTATGACTCCATATCAAAATACTGATTTGAAA--TC-AAAATTAA  47

seq1  AAAAAGACAAAACTCATGACAGTAGATTACAAAGTGCATATCTCAAAAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAGACAAAACTCATGACAGTAGATTACAAAGTGCATATCTCAAAAGA  97

seq1  AAAAATACAATAGACAGGTAAACTGGGGAAACACTAAGGTAATTCTTAC-  149
      |||||||| ||||||||||||||||||||||||||||||||| |||||| 
seq2  AAAAATAC-ATAGACAGGTAAACTGGGGAAACACTAAGGTAA-TCTTACA  145

seq1  AATTGTTTCCATTTTGTTGTGGTGTGTGAGTGGTTTGCCTACATCTATAC  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGTTTCCATTTTGTTGTGGTGTGTGAGTGGTTTGCCTACATCTATAC  195

seq1  ATGTAGATGCCAAGTGCCAAGGAGGCCAGAGAAGAGTAGGGGAGTCCCTG  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTAGATGCCAAGTGCCAAGGAGGCCAGAGAAGAGTAGGGGAGTCCCTG  245

seq1  GACCTGGAGTTACAGATGGTTCTAAGCTGCCATGAAGGTTCTGGGAACTA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCTGGAGTTACAGATGGTTCTAAGCTGCCATGAAGGTTCTGGGAACTA  295

seq1  AACCCAGGTTCTGTGTAAGAACAACATAAGTTCTGAAGGGCTGAGCCACC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCAGGTTCTGTGTAAGAACAACATAAGTTCTGAAGGGCTGAGCCACC  345

seq1  TCCAGCCCTCTTTTCCTGATTTTAGATTTACCATTTTTAATGAAATATGA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGCCCTCTTTTCCTGATTTTAGATTTACCATTTTTAATGAAATATGA  395

seq1  TAAACCTCTAACAAGAAAGAAAATTAAATTGAAGGATCTTTATGAGGCTG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACCTCTAACAAGAAAGAAAATTAAATTGAAGGATCTTTATGAGGCTG  445

seq1  TTTTCAGAGGTTGGGTGTGGTGATACATGCCTATAATCCAAATACTAAAT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCAGAGGTTGGGTGTGGTGATACATGCCTATAATCCAAATACTAAAT  495

seq1  TAGAGGAAGAAGAATGTCCACAAGGTCCCCATCTCAACAGGAAATGCTAA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGGAAGAAGAATGTCCACAAGGTCCCCATCTCAACAGGAAATGCTAA  545

seq1  GGCCAGGACTACAAAGCCAGACTGTCTTGACTCCCAACCCCTCAAAAAGG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCAGGACTACAAAGCCAGACTGTCTTGACTCCCAACCCCTCAAAAAGG  595

seq1  TTGTTTCTAGCTCTCTTGCCACATTCAATCTCCAGAAATCATCTGGAATA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTCTAGCTCTCTTGCCACATTCAATCTCCAGAAATCATCTGGAATA  645

seq1  ATCTTTTTACTCCTTAAGTACATTTATTTATTTTGTGGGAGTGGATGTAC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTTTTACTCCTTAAGTACATTTATTTATTTTGTGGGAGTGGATGTAC  695

seq1  CACACAGCACATGTGTGGAGGTCAGAGGACAACTTAATGGGAGTTACTCT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACAGCACATGTGTGGAGGTCAGAGGACAACTTAATGGGAGTTACTCT  745

seq1  TTCCCTCCACCATTGTGGGTCCTGGGGCTCTAACTCTGATGGTTAGGCTG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCTCCACCATTGTGGGTCCTGGGGCTCTAACTCTGATGGTTAGGCTG  795

seq1  CACAGCAAGGGTCTTTATCTGCTGAGCATCTGGCTCTAGAATAAACTTTC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGCAAGGGTCTTTATCTGCTGAGCATCTGGCTCTAGAATAAACTTTC  845

seq1  TAAGCAAATAATCAGATCACCCTTTATTGTAAGGTCACCTCTCTTCAAAA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGCAAATAATCAGATCACCCTTTATTGTAAGGTCACCTCTCTTCAAAA  895

seq1  GCTTTACAATATATTCTCTCTGCATTTGGAATAAAACTCTCGATAATGTG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTACAATATATTCTCTCTGCATTTGGAATAAAACTCTCGATAATGTG  945

seq1  GTGTCTGCCTATCTGCTTCTCTATGCCTCAGCCACAGTGGCCACCTTGCC  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTCTGCCTATCTGCTTCTCTATGCCTCAGCCACAGTGGCCACCTTGCC  995

seq1  TTTCCTAAAGGGCACCAGCTCTTTATTCCTGGTACCTCCAGTGTCTTTCC  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCTAAAGGGCACCAGCTCTTTATTCCTGGTACCTCCAGTGTCTTTCC  1045

seq1  TGACCTCTCTAAAGTTACATTCTACTACTGATCCTCTAGTTTTACGTTTC  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACCTCTCTAAAGTTACATTCTACTACTGATCCTCTAGTTTTACGTTTC  1095

seq1  AAGGTTACATACTGAATTC  1118
      |||||||||||||||||||
seq2  AAGGTTACATACTGAATTC  1114

seq1: chr11_61559009_61560130
seq2: B6Ng01-337J11.g_65_1199

seq1  GAATTCCAGGAGAGCCAGGGCTACACAGAGAAACCCTGTCTTGAAAAAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGGAGAGCCAGGGCTACACAGAGAAACCCTGTCTTGAAAAAAA  50

seq1  CAAACAAACGAATAAGCAAATCAACAACAAGCCCTTAAAGTACAGAAACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACAAACGAATAAGCAAATCAACAACAAGCCCTTAAAGTACAGAAACA  100

seq1  GCAGAAAATCTTAACAAAGAAATATTTCTACAAGTGTTTTTACAGCTGAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAAAATCTTAACAAAGAAATATTTCTACAAGTGTTTTTACAGCTGAT  150

seq1  TGTCTCTCCTACAATTTTCCTTAGCAGGGATGACAAAACCCAACATAAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTCTCCTACAATTTTCCTTAGCAGGGATGACAAAACCCAACATAAGA  200

seq1  TACCAAGACCTCTTCACCCACACTGTGACATCTGAAATGATTAACAGAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCAAGACCTCTTCACCCACACTGTGACATCTGAAATGATTAACAGAAA  250

seq1  AAGGTACGAGAACATTTTAGAAGTAGTGTTGTCCAAAAGAGTAAGGAGCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTACGAGAACATTTTAGAAGTAGTGTTGTCCAAAAGAGTAAGGAGCT  300

seq1  GAACCTGTGTGGTCCATCCAAGCCTATAAGAGAAAGGAGAAAGCGTCCAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACCTGTGTGGTCCATCCAAGCCTATAAGAGAAAGGAGAAAGCGTCCAG  350

seq1  AAGACTCAGTGAGCTAGCCTGTTTCCTCTGTCAAAGCTTGTTAGTGTTTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACTCAGTGAGCTAGCCTGTTTCCTCTGTCAAAGCTTGTTAGTGTTTC  400

seq1  AAAGGGGTTCAGTGGTTAATAAGTCAACTAGATAGGATTTACAGTCACCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGGGTTCAGTGGTTAATAAGTCAACTAGATAGGATTTACAGTCACCT  450

seq1  AGAGGTGAGTCTGGGAGACACATGTGAGTGATCAGTGTCTGGCATGACTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGTGAGTCTGGGAGACACATGTGAGTGATCAGTGTCTGGCATGACTA  500

seq1  TGAGGGTTATTTTGATTACACTGAAGCAAGAAGATTCATTGGGCCGGGCG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGGTTATTTTGATTACACTGAAGCAAGAAGATTCATTGGGCCGGGCG  550

seq1  TGGTGGTGCACGCCTTTAACCCCAGCACTCGGGAGGCGGAGGCAGAGGCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGGTGCACGCCTTTAACCCCAGCACTCGGGAGGCGGAGGCAGAGGCA  600

seq1  GGCGGACTTCTGAGTTCGAGGCCAGCCTGGTCTACAAAGTGAGTTCCAGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCGGACTTCTGAGTTCGAGGCCAGCCTGGTCTACAAAGTGAGTTCCAGG  650

seq1  ACGTCAGAGCTATACAGAGAAATCCTTGTCTCGAAAAACCAAAAAAAAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGTCAGAGCTATACAGAGAAATCCTTGTCTCGAAAAACCAAAAAAAAAA  700

seq1  AAAAAAAAAAAAGATGATTCATTGGGTGACATCACACCTGGGCTGATGTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAAAAAGATGATTCATTGGGTGACATCACACCTGGGCTGATGTC  750

seq1  TGTGTGAATAAGGAGGAAACTAGCTGAGCCCAGTATCTGTCCTTCCTCCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGAATAAGGAGGAAACTAGCTGAGCCCAGTATCTGTCCTTCCTCCC  800

seq1  TTCCTGACTGAAAGTGCAGTATGGAA-GGCCCAGCTACC-TTACC-TTCT  847
      |||||||||||||||||||||||||| |||||||||||| ||||| ||||
seq2  TTCCTGACTGAAAGTGCAGTATGGAAGGGCCCAGCTACCTTTACCTTTCT  850

seq1  ACGTGATGGATTGTACCTCAAACTGGGAGTCAGAATAAACGTTCTCTCCC  897
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  ACGTGATGGATTGTACCTC-AACTGGGAGTCAGAATAAACGTTCTCTCCC  899

seq1  TCCAGGTGTGTTT-GTCAGGTGTTCTGTCACATCAATAACATAAATAACT  946
      ||||||||||||| |||||||||||||||||||||||||||||||  |||
seq2  TCCAGGTGTGTTTGGTCAGGTGTTCTGTCACATCAATAACATAAAATACT  949

seq1  ACTATGG-TTCCCCAGGACTGAAGTTGCTAGGGTTTATATTTTTTAAAGC  995
      ||||||| |||||||||||||||||||||| |||||||||||||| ||||
seq2  ACTATGGTTTCCCCAGGACTGAAGTTGCTA-GGTTTATATTTTTTTAAGC  998

seq1  CGTG-TTTTGTTTCTGCC-TTCTTTTTAAAGCTA-CTTTGGAAATGT--A  1040
      |||| ||||||||||||| |||||||||||||||   ||||||||||   
seq2  CGTGTTTTTGTTTCTGCCTTTCTTTTTAAAGCTATACTTGGAAATGTTAT  1048

seq1  TTTTCTAT-AGTGAGT--ATCTGTAAGAAGTGGTGACCTGGGGAAGTTTC  1087
      |||||||| |||||||   ||||||   ||| ||||||  || |||||||
seq2  TTTTCTATAAGTGAGTTATTCTGTA--GAGTTGTGACCCTGGCAAGTTTC  1096

seq1  AG-TCCTTTGTCTG-CA-CAAACTTCTGTG-ATGTATGC  1122
      || ||||||||||| || |||||||||||| ||||||||
seq2  AGTTCCTTTGTCTGTCACCAAACTTCTGTGAATGTATGC  1135