BAC Information

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BAC

Clone NameB6Ng01-337N06
Chromosome6 (Build37)11 (Build37)
Map Location 8,605,949 - 8,607,01127,417,306 - 27,417,792
singlet/doubletsingletsinglet
Overlap geneIca1
Upstream geneAsns, EG667529, C1galt1, LOC100040661, Col28a1, BC020002, Rpa3, LOC100036521, LOC667028, A430035B10Rik, Glcci1
Downstream geneLOC100040238, Nxph1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-337N06.bB6Ng01-337N06.g
ACCGA122327GA122328
length1,098920
definitionB6Ng01-337N06.b B6Ng01-337N06.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(8,605,949 - 8,607,011)(27,417,306 - 27,417,792)
sequence
gaattcacctggtagggcaaaatctgagctctcctatctccaacaatgag
gaacacccaccaggaaatcagcaatgaccacacctaggatatgatatcaa
gattgtaccaagactactcaggcctgctcagaaatgttatctcctggaaa
gaaacagctgtctgctaggttccacttacttggaggggctaaagtcactt
acaatagcattttctagccatcttgaaatatattatgtactgcttaaggg
ttgacatcatcaataacggggactacaggaagcaaattaatacagtcttt
tctcaagacagaaaagaaagccaaaaggaaatttgcaaaaaagaacaaac
aagttgggtgttgtgcattgaaacagtgtctgtgaagcaatttaaatgga
aattaaaacttactcttataagcagatgaatctttgtgctcatcctccaa
agaaattaaccttaaaataaaaagaatgttgattttacaccattctgcaa
atttatgtttatgggatagctctatcttcagtgcaatatctattgcttca
ctgacagcaacacacacacacacacacacacacacacacacacacacaca
gaggttgggagtagagagagggagaggggggtcatttgtatggcatatat
tttctgaggaagaaataacattgcttgtactctgtaccatttcaattagc
attcttcatgcaagaatatggcttcactgtaagggcacacacataaacat
ctttgacaggcagttagggacaactgccattacactcacatagttaccag
tgggggggaaaaaaccatagaaaagggatggttagacaatgggttaatcc
tgaactcctgcagctaaaaaaaagagacactaaacctacacagaaggcag
aaaggcagaaaggcagtgttcactcccaaacctcagaggcacactttggc
tcatccagaaccggctcttccctgtgactttcacagggcaaactccccca
ccaccgacactcatttattttggtccttccttggtgctggtggctcactt
tttatctgcttccttctggaaacaaaaaaatccttctaaaaattttca

gaattcacttagggtcagccattggaagcagggctgcagcaggagagcgg
agtgaggcctgtattgaccccttatgaacactttgaattttctggtttat
ttttacctgttttccagtgtcccttcttgtgaatctgaccttggacctca
acttagatgaattgatgagttaccttcaattttggaaactagttatttca
tctcaaaacaaaagatgtacagtgtcctatctctagacttctgtgaaaga
gaatatcctcttttttttttttaagttcacattttttaaagcatttttat
tagatattttctttatttacatttcaaagatatcccctttcctggtttcc
cctctgaaaacccccatcccatcacccctcccctgctcatccacccaccc
accctgcttcctgtccctggcattcccctgtaccggggcatagagccttt
acagggcctttcctcccattgatgactgacaaggccatcctctgctacat
ttgctgctggagccataggtccctccatgtgtactctttggttggtggtt
tagtccctgagaggtctggggttactggttggttcatattgttgttcctc
ctatggggctgcaaaccctttcagctccttgggtcctttccagctccttc
attggggatcctgtgctcagtccaatggttggctgcgagcatctgcttct
gtattggtcaggatctggcagagcctctcaggagacagctatatcaggct
cctgtcagcaagcacttcttggcctcagcaatagtatctgggtttggtgt
ctgtatgtgggatggatccccaggtggggcagtctctggatgggctttcc
ttcagtttctgctccactcttttgtccctgtattttctttagacagagca
attctgggttaaaatttgaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_8605949_8607011
seq2: B6Ng01-337N06.b_50_1147

seq1  GAATTCACCTGGTAGGGCAAAATCTGAGCTCTCCTATCTCCAACAATGAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACCTGGTAGGGCAAAATCTGAGCTCTCCTATCTCCAACAATGAG  50

seq1  GAACACCCACCAGGAAATCAGCAATGACCACACCTAGGATATGATATCAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACACCCACCAGGAAATCAGCAATGACCACACCTAGGATATGATATCAA  100

seq1  GATTGTACCAAGACTACTCAGGCCTGCTCAGAAATGTTATCTCCTGGAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTGTACCAAGACTACTCAGGCCTGCTCAGAAATGTTATCTCCTGGAAA  150

seq1  GAAACAGCTGTCTGCTAGGTTCCACTTACTTGGAGGGGCTAAAGTCACTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACAGCTGTCTGCTAGGTTCCACTTACTTGGAGGGGCTAAAGTCACTT  200

seq1  ACAATAGCATTTTCTAGCCATCTTGAAATATATTATGTACTGCTTAAGGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATAGCATTTTCTAGCCATCTTGAAATATATTATGTACTGCTTAAGGG  250

seq1  TTGACATCATCAATAACGGGGACTACAGGAAGCAAATTAATACAGTCTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGACATCATCAATAACGGGGACTACAGGAAGCAAATTAATACAGTCTTT  300

seq1  TCTCAAGACAGAAAAGAAAGCCAAAAGGAAATTTGCAAAAAAGAACAAAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAAGACAGAAAAGAAAGCCAAAAGGAAATTTGCAAAAAAGAACAAAC  350

seq1  AAGTTGGGTGTTGTGCATTGAAACAGTGTCTGTGAAGCAATTTAAATGGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTGGGTGTTGTGCATTGAAACAGTGTCTGTGAAGCAATTTAAATGGA  400

seq1  AATTAAAACTTACTCTTATAAGCAGATGAATCTTTGTGCTCATCCTCCAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAAAACTTACTCTTATAAGCAGATGAATCTTTGTGCTCATCCTCCAA  450

seq1  AGAAATTAACCTTAAAATAAAAAGAATGTTGATTTTACACCATTCTGCAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAATTAACCTTAAAATAAAAAGAATGTTGATTTTACACCATTCTGCAA  500

seq1  ATTTATGTTTATGGGATAGCTCTATCTTCAGTGCAATATCTATTGCTTCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTATGTTTATGGGATAGCTCTATCTTCAGTGCAATATCTATTGCTTCA  550

seq1  CTGACAGCAACACACACACACACACACACACACACACACACACACACACA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACAGCAACACACACACACACACACACACACACACACACACACACACA  600

seq1  GAGGTTGGGAGTAGAGAGAGGGAGAGGGGGGTCATTTGTATGGCATATAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTTGGGAGTAGAGAGAGGGAGAGGGGGGTCATTTGTATGGCATATAT  650

seq1  TTTCTGAGGAAGAAATAACATTGCTTGTACTCTGTACCA-TTCAA-TAGC  698
      ||||||||||||||||||||||||||||||||||||||| ||||| ||||
seq2  TTTCTGAGGAAGAAATAACATTGCTTGTACTCTGTACCATTTCAATTAGC  700

seq1  A-TCTTCATGCAAGAATATGGCTTCACTGTAA-GGCACACACATAAACAT  746
      | |||||||||||||||||||||||||||||| |||||||||||||||||
seq2  ATTCTTCATGCAAGAATATGGCTTCACTGTAAGGGCACACACATAAACAT  750

seq1  C-TTGACAGGCAGTTAGGGACAACTGCCA-TACACTCACATAGTTACCAG  794
      | ||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  CTTTGACAGGCAGTTAGGGACAACTGCCATTACACTCACATAGTTACCAG  800

seq1  T-GGGGGGAAAAAACCATAG-AAAGGGATGGTTAGACAAT-GGTTAATCC  841
      | |||||||||||||||||| ||||||||||||||||||| |||||||||
seq2  TGGGGGGGAAAAAACCATAGAAAAGGGATGGTTAGACAATGGGTTAATCC  850

seq1  TG-ACTCCTGCAGCT-AAAAAAAGAGACACTAAA-CTACACAGAAGGCAG  888
      || |||||||||||| |||||||||||||||||| |||||||||||||||
seq2  TGAACTCCTGCAGCTAAAAAAAAGAGACACTAAACCTACACAGAAGGCAG  900

seq1  -AAGGCAG-AAGGCAG-GGTCACTCCCAAACC-CAGAGGCACACTT--GC  932
       ||||||| ||||||| | ||||||||||||| |||||||||||||  ||
seq2  AAAGGCAGAAAGGCAGTGTTCACTCCCAAACCTCAGAGGCACACTTTGGC  950

seq1  TCAT-CAGAA-CGGCTCTT-CCTGTGAC-TTCACA-GGCAGACT-CCCCA  976
      |||| ||||| |||||||| |||||||| |||||| |||| ||| |||||
seq2  TCATCCAGAACCGGCTCTTCCCTGTGACTTTCACAGGGCAAACTCCCCCA  1000

seq1  CCACCGACACTCATTTA-TTTGGTTCTTTCTT-GTGCT-GTGGCTCAC-T  1022
      ||||||||||||||||| |||||| ||| ||| ||||| ||||||||| |
seq2  CCACCGACACTCATTTATTTTGGTCCTTCCTTGGTGCTGGTGGCTCACTT  1050

seq1  TTTATCTGC-TCCTTCTG--AAC--AAAAATCCTTCTAAAA--TTTCA  1063
      ||||||||| ||||||||  |||  ||||||||||||||||  |||||
seq2  TTTATCTGCTTCCTTCTGGAAACAAAAAAATCCTTCTAAAAATTTTCA  1098


seq1: chr11_27417306_27417792
seq2: B6Ng01-337N06.g_321_661

seq1  CTCTTTTTTTTTTTTATGTTTTATAAGAACATTCATTTATTCATTCTTCC  50
                                                        
seq2  --------------------------------------------------  0

seq1  ATATTCCAGAGAAATCTGAAGGTGCTAGGATACAGTAGTGACTAAGACAG  100
                                                        
seq2  --------------------------------------------------  0

seq1  AGATGAGTTCTGCCTTAATGAAGTCAACTCTATTTTGTATGTTTGTGTGT  150
                                                        
seq2  --------------------------------------------------  0

seq1  ACCTTTCCATCAGGTGGGGCAGGGCATGTGTATGAAAGGCAGAGGTAAAA  200
                                                        
seq2  --------------------------------------------------  0

seq1  ATTGGTCTTCCTCATCTTTTTTTTT---------TTTTTT--GTCTTTTT  239
                ||| | |||||||||         ||||||    | ||||
seq2  ----------CTCTTTTTTTTTTTTAAGTTCACATTTTTTAAAGCATTTT  40

seq1  TATTAGATATTTTCTTTATTTACATTTCAAATA------CTATCCTGAAA  283
      ||||||||||||||||||||||||||||||| |      || |||||   
seq2  TATTAGATATTTTCTTTATTTACATTTCAAAGATATCCCCTTTCCTG---  87

seq1  GTT--CCCTAT----------ATCCTCT---CCCTGCCCTGCTCCCCTAC  318
      |||  |||| |          ||||  |   |||| ||||||||  | ||
seq2  GTTTCCCCTCTGAAAACCCCCATCCCATCACCCCTCCCCTGCTCATCCAC  137

seq1  TCACTCACTCCCACATCTTGGCCCTGGCATTCCCCTGTACTGGGGCATAT  368
       ||| ||| ||  | || || ||||||||||||||||||| |||||||| 
seq2  CCACCCAC-CCTGCTTCCTGTCCCTGGCATTCCCCTGTACCGGGGCATAG  186

seq1  AAAGTTTGCAAGTCCAATGGGCCTCTCTTCCCAATGATGGCCGACTAGGC  418
      |   ||| ||        |||||| || ||||| ||||| | ||| ||||
seq2  AGCCTTTACA--------GGGCCTTTCCTCCCATTGATGACTGACAAGGC  228

seq1  CATCTTTGGCTACATATGCAGCTAGAGACA--------------------  448
      |||| |  ||||||| ||| ||| ||| ||                    
seq2  CATCCTCTGCTACATTTGCTGCTGGAGCCATAGGTCCCTCCATGTGTACT  278

seq1  ------------------------AGAGAACTGGGGGTACTGGTTAGTTC  474
                              ||||  |||||| |||||||| ||||
seq2  CTTTGGTTGGTGGTTTAGTCCCTGAGAGGTCTGGGGTTACTGGTTGGTTC  328

seq1  ATATTGTTGTTCC  487
      |||||||||||||
seq2  ATATTGTTGTTCC  341


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