BAC Information

Click to search

BAC

Clone NameB6Ng01-338C18
Chromosome11 (Build37)
Map Location 91,002,999 - 91,004,164
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039104, Mmd, Hlf, Stxbp4, LOC100039267, Cox11, Tom1l1, LOC638903
Downstream geneEG664976, Kif2b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-338C18.bB6Ng01-338C18.g
ACCGA122556GA122557
length1,165992
definitionB6Ng01-338C18.b B6Ng01-338C18.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctatctccctcagtctcaactactggagaatttgaaagtaggcat
gagaagcaaatggttaaataaacaattaaaattcgtataacagaaataaa
gaggaagggaaattctagatttgggggatacacatccgcctattcctttt
tctagaaaccctgttgccctcctatacattatccccaaaagagtgtgtct
gcttcttcatacatagagcttgatcagaccacaggtcacatgagagctga
aaaaagatcagcagaaatggtgagatgtctctgcagcaaacaagtttgtt
ggtagtggttcccccaatttcttcttcccttctcttgagacaaatgcttt
gtatactagggttctggaacaattacaagtcaaggagaaaagtacaaatt
actgattctatgtttgggttgttttgttttgtttttctgatgaactaagc
aaatacaagttttaagtcagaaacaaagttgatgaaaaataattaggtct
ggtatgcatgaaatatttttatcaactctcctactatggcattctatcat
ccaagaaatgtattctgaattttatgtgtctttcatagtcaaattaatat
ataattgctttagaatattagtggaaggcagatacaagacactcttggga
tgaggtatagaatttatgctttatctaaaagaataaatgtgcttctccat
aacttagcctctttctggtacctgatatactgcacagtttgtaatccatt
aatgcagtataagttactttagactcttggaggagaaaaatatttctgag
tttatagaacattttacaagaaagtatttttttgttgatgttacaattaa
tgtattttgttttctggagctattcaaacatcatttccctttatttttct
ccctctggcaattctctatctgcttctttgttcattactggtcgaatgca
ttatataataagactacataagttttattatacttttagcttcactttgt
ggtttgtatctgattttttttttctaaagtatgtttcctctaaggcattt
gacatttaaaaactatctagtagagaatttactgttggtgtggaatgcat
gactgagtagttgagcaaaatataccattttaagggctactcgatatgga
tatatttgggctgtt

gaattctcacctgaggaataccgaatggcagagaagcacctgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccacctcacaccagtgagaatggctaagatcaaaaattcaggtgacagc
agatgctggcgaggatgtggagaaagaggaacactcctccattgttggtg
ggattgcaggcttgtacaaccactctggaaatcagtctggcggttcctca
gaaaattggacatagtactaccggaggatccagcaatacctctcctgggc
atatatccagaagaagccccaactggtaagaaggacacatgctccactat
gttcatagcagccttatttataatagccagaaactggaaagaacccagat
gcccctcaacagaggaatggatacagaaaatgtggtacatctacacaatg
gagtactactcagctattaaaaagaatgaatttatgaaattcctagccaa
atggatggacctggagagcatcatcctgagtgaggtaacacaatcacaaa
ggaactcacacaatatgtactcactgataagtggatactagcccaaaacc
taggatacccacgatataagatacaatttcctaaacacatgaaattcaag
aaaaatgaagactgaagtgtggacactatgcccctccttagaagtgggaa
caaaacacccatggaaggagttacagaaacaaagtatggagctgagatga
aaggatggaccatgtagagactgccatatccagggatccaccccataatc
agcttccaaatgctgacaccattgcatacactagcaagattttactgaaa
ggacccagatgtagctgtctcttgtgagactatgccggggcctagcaaac
acagaagtggatgctcacagtcagctaatggatggatcacagggctccca
atggaggagctagagaaagtacccaaaggagctaagggatct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_91002999_91004164
seq2: B6Ng01-338C18.b_49_1213 (reverse)

seq1  AACAGCCAATAT-TATCCATATGGAGTAGCCC-TAAAATGGTTATATTTT  48
      ||||||| | || ||||||||| ||||||||| |||||||| ||||||||
seq2  AACAGCCCAAATATATCCATATCGAGTAGCCCTTAAAATGG-TATATTTT  49

seq1  GCTCAACTTACTCAGTTCATGCATTCCACA-CAACAGTAAA-TCTCTACT  96
      ||||||| ||||||| |||||||||||||| |||||||||| ||||||| 
seq2  GCTCAAC-TACTCAG-TCATGCATTCCACACCAACAGTAAATTCTCTAC-  96

seq1  TAGATAGTTTTTTAAATGTCAAATGCTTTAGAGGAAACATACTTTTAGAA  146
      ||||||| |||||||||||||||||| ||||||||||||||||||   ||
seq2  TAGATAG-TTTTTAAATGTCAAATGCCTTAGAGGAAACATACTTTAGAAA  145

seq1  AAAAAAATCAGATACAAACCACAAAGTGAAGCTAAAAGTATAATAAAACT  196
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAATCAGATACAAACCACAAAGTGAAGCTAAAAGTATAATAAAACT  195

seq1  TATGTAGTCTTATTATATAATGCATTCGACCAGTAATGAACAAAGAAGCA  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTAGTCTTATTATATAATGCATTCGACCAGTAATGAACAAAGAAGCA  245

seq1  GATAGAGAATTGCCAGAGGGAGAAAAATAAAGGGAAATGATGTTTGAATA  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAGAGAATTGCCAGAGGGAGAAAAATAAAGGGAAATGATGTTTGAATA  295

seq1  GCTCCAGAAAACAAAATACATTAATTGTAACATCAACAAAAAAATACTTT  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCCAGAAAACAAAATACATTAATTGTAACATCAACAAAAAAATACTTT  345

seq1  CTTGTAAAATGTTCTATAAACTCAGAAATATTTTTCTCCTCCAAGAGTCT  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTAAAATGTTCTATAAACTCAGAAATATTTTTCTCCTCCAAGAGTCT  395

seq1  AAAGTAACTTATACTGCATTAATGGATTACAAACTGTGCAGTATATCAGG  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTAACTTATACTGCATTAATGGATTACAAACTGTGCAGTATATCAGG  445

seq1  TACCAGAAAGAGGCTAAGTTATGGAGAAGCACATTTATTCTTTTAGATAA  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCAGAAAGAGGCTAAGTTATGGAGAAGCACATTTATTCTTTTAGATAA  495

seq1  AGCATAAATTCTATACCTCATCCCAAGAGTGTCTTGTATCTGCCTTCCAC  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATAAATTCTATACCTCATCCCAAGAGTGTCTTGTATCTGCCTTCCAC  545

seq1  TAATATTCTAAAGCAATTATATATTAATTTGACTATGAAAGACACATAAA  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATATTCTAAAGCAATTATATATTAATTTGACTATGAAAGACACATAAA  595

seq1  ATTCAGAATACATTTCTTGGATGATAGAATGCCATAGTAGGAGAGTTGAT  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCAGAATACATTTCTTGGATGATAGAATGCCATAGTAGGAGAGTTGAT  645

seq1  AAAAATATTTCATGCATACCAGACCTAATTATTTTTCATCAACTTTGTTT  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATATTTCATGCATACCAGACCTAATTATTTTTCATCAACTTTGTTT  695

seq1  CTGACTTAAAACTTGTATTTGCTTAGTTCATCAGAAAAACAAAACAAAAC  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACTTAAAACTTGTATTTGCTTAGTTCATCAGAAAAACAAAACAAAAC  745

seq1  AACCCAAACATAGAATCAGTAATTTGTACTTTTCTCCTTGACTTGTAATT  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCAAACATAGAATCAGTAATTTGTACTTTTCTCCTTGACTTGTAATT  795

seq1  GTTCCAGAACCCTAGTATACAAAGCATTTGTCTCAAGAGAAGGGAAGAAG  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCCAGAACCCTAGTATACAAAGCATTTGTCTCAAGAGAAGGGAAGAAG  845

seq1  AAATTGGGGGAACCACTACCAACAAACTTGTTTGCTGCAGAGACATCTCA  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTGGGGGAACCACTACCAACAAACTTGTTTGCTGCAGAGACATCTCA  895

seq1  CCATTTCTGCTGATCTTTTTTCAGCTCTCATGTGACCTGTGGTCTGATCA  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTTCTGCTGATCTTTTTTCAGCTCTCATGTGACCTGTGGTCTGATCA  945

seq1  AGCTCTATGTATGAAGAAGCAGACACACTCTTTTGGGGATAATGTATAGG  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCTATGTATGAAGAAGCAGACACACTCTTTTGGGGATAATGTATAGG  995

seq1  AGGGCAACAGGGTTTCTAGAAAAAGGAATAGGCGGATGTGTATCCCCCAA  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGCAACAGGGTTTCTAGAAAAAGGAATAGGCGGATGTGTATCCCCCAA  1045

seq1  ATCTAGAATTTCCCTTCCTCTTTATTTCTGTTATACGAATTTTAATTGTT  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTAGAATTTCCCTTCCTCTTTATTTCTGTTATACGAATTTTAATTGTT  1095

seq1  TATTTAACCATTTGCTTCTCATGCCTACTTTCAAATTCTCCAGTAGTTGA  1146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTAACCATTTGCTTCTCATGCCTACTTTCAAATTCTCCAGTAGTTGA  1145

seq1  GACTGAGGGAGATAGAATTC  1166
      ||||||||||||||||||||
seq2  GACTGAGGGAGATAGAATTC  1165


| Home | SequenceCutter | Blast | Download |