BAC Information

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BAC

Clone NameB6Ng01-338C24
Chromosome11 (Build37)9 (Build37)
Map Location 25,977,194 - 25,978,39390,624,379 - 90,624,854
singlet/doubletsingletsinglet
Overlap gene5730522E02Rik
Upstream geneLOC100042328
Downstream geneLOC100042345, Fancl, Vrk2, EG628586, Ppia-ps11_266.1, OTTMUSG00000005300, LOC666270, LOC100042367
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-338C24.bB6Ng01-338C24.g
ACCGA122568GA122569
length1,209982
definitionB6Ng01-338C24.b B6Ng01-338C24.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(25,977,194 - 25,978,393)(90,624,379 - 90,624,854)
sequence
gaattcaggtctctaatccatctccccagctctaggacttgcgtttaaat
gtaataatcatgtaaatgccactccacgactggagcatgctcactgtact
taggagatctgagataccactcatgtgttacaaagtaaccctacgggatg
actactacaagctagagttcgctacatcttgcacaattttaaatatgctt
aagaaataaagaaaagcctagcaaaacaaatatttgcttaatcaagttta
acctttgtgataccaaaaccacaacaaaacctaggaagatacgaccttcc
tgttacaattcaggagcttgtgtttcccttccagcactctttccctatac
ccgatgtttaccttttcatacttgctgctttcaaaactcctcttcaagaa
gctcactgaatagcaggccatcgacgaagacaattggaataactcaaatc
taagtttatctaacaattgcctcacttaactaaaagtaaagacaggactc
cagagacaattccccccatggtaactggaacttcaaataataaaacagtt
aaacttatacttttaaaacctgtaaacaccgaggaccctttacttgccaa
ggtccaatttttacatttacataaaagtaataacagttgtataaataagc
ctttagaattacattagaagtttacttcataaaataattagcttttacct
tcatccctctgtgaagctcagttctactacttagatcagggggagggtct
gctatttgtaggtttgtcttggttttccttgttgttgctttgttttcttt
tgaagacagtctcactctgcagccctggctgacccagggctcactgggat
ctgcctgtcttggcctctgccctccttccaccaccaccccttgccagcgc
tgggattaaatgtatatgccccagcaagcatactactggtaagtactttt
attccccttcttaccagcaaataaacccatgaagcaccaagtcataaaat
ggctttagcaagctgctcttttttctcaacagagaaaagtggatttgttt
gtttggtggtcgttggttttttgttttgatttgcttgtctgggtggagct
gctgtgactactacaaggcgcatgtattaaagtaacactaacaatattga
gccaaaattaattcacagtttgttatattccctgccattaggaagacaat
aacttatct

gaattcttttttgtactttttattagatattttctttatttacatttgaa
atgttgtcccctttcctagtttctcctctgaaaatccccatccccttctc
cctccccctgctccccaacccacccactcctgcttcctggccctgccatt
cccctatactggggcatagaaccttcacaggaccaagggcctctcctccc
attgatgaccaactagaccatcctctgctacatatgcagctagagccatg
agtcccaccatatgttttctttggttggtggtttagtcccagggagctct
ggagatactggttagttcatattgttgttcctcctatggggctggaaaac
cccttcagcttcttgggtactttctctggctccttcattggggatcctgt
gctttgtccaatagattgctgtgagcatccacttctgtatttgtcaggca
ctggcagagcttctcaggagacagctatatcagtctcccttcagcaaact
cttgttggcatccacaatagagactaggtttggtaactgtatataggaag
gatccccaggtgaggcagtctctggatggcctttccttcagtctctgctc
cacattctgtctctgtatctcctcccatggggattttacccccttctaag
aaggacctaagtatccacactttgttcttcttgagcttcatgtggtctgt
gaattgcatcataggtattacgagcttctgggctaatatccacttatcag
tgagtgcatcacttttctgttagataataataataatgtgtgatgactag
tgacttgtgtttagcatctgatggtgatcagctcagtggctggaccaaga
agaagctccaaaccattttcaatgtgattttcccggttgatgcatggtgc
ttataacgagtttctgtttcacttttggggcgcttatgttttctttagtt
gtactgcttctcacttttatagtaaaattcag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_25977194_25978393
seq2: B6Ng01-338C24.b_50_1258

seq1  GAATTCAGGTCTCTAATCCATCTCCCCAGCTCTAGGACTTGCGTTTAAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGGTCTCTAATCCATCTCCCCAGCTCTAGGACTTGCGTTTAAAT  50

seq1  GTAATAATCATGTAAATGCCACTCCACGACTGGAGCATGCTCACTGTACT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATAATCATGTAAATGCCACTCCACGACTGGAGCATGCTCACTGTACT  100

seq1  TAGGAGATCTGAGATACCACTCATGTGTTACAAAGTAACCCTACGGGATG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGAGATCTGAGATACCACTCATGTGTTACAAAGTAACCCTACGGGATG  150

seq1  ACTACTACAAGCTAGAGTTCGCTACATCTTGCACAATTTTAAATATGCTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTACTACAAGCTAGAGTTCGCTACATCTTGCACAATTTTAAATATGCTT  200

seq1  AAGAAATAAAGAAAAGCCTAGCAAAACAAATATTTGCTTAATCAAGTTTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAATAAAGAAAAGCCTAGCAAAACAAATATTTGCTTAATCAAGTTTA  250

seq1  ACCTTTGTGATACCAAAACCACAACAAAACCTAGGAAGATACGACCTTCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTTGTGATACCAAAACCACAACAAAACCTAGGAAGATACGACCTTCC  300

seq1  TGTTACAATTCAGGAGCTTGTGTTTCCCTTCCAGCACTCTTTCCCTATAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTACAATTCAGGAGCTTGTGTTTCCCTTCCAGCACTCTTTCCCTATAC  350

seq1  CCGATGTTTACCTTTTCATACTTGCTGCTTTCAAAACTCCTCTTCAAGAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGATGTTTACCTTTTCATACTTGCTGCTTTCAAAACTCCTCTTCAAGAA  400

seq1  GCTCACTGAATAGCAGGCCATCGACGAAGACAATTGGAATAACTCAAATC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCACTGAATAGCAGGCCATCGACGAAGACAATTGGAATAACTCAAATC  450

seq1  TAAGTTTATCTAACAATTGCCTCACTTAACTAAAAGTAAAGACAGGACTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTTTATCTAACAATTGCCTCACTTAACTAAAAGTAAAGACAGGACTC  500

seq1  CAGAGACAATTCCCCCCATGGTAACTGGAACTTCAAATAATAAAACAGTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGACAATTCCCCCCATGGTAACTGGAACTTCAAATAATAAAACAGTT  550

seq1  AAACTTATACTTTTAAAACCTGTAAACACCGAGGACCCTTTACTTGCCAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTTATACTTTTAAAACCTGTAAACACCGAGGACCCTTTACTTGCCAA  600

seq1  GGTCCAATTTTTACATTTACATAAAAGTAATAACAGTTGTATAAATAAGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCCAATTTTTACATTTACATAAAAGTAATAACAGTTGTATAAATAAGC  650

seq1  CTTTAGAATTACATTAGAAGTTTACTTCATAAAATAATTAGCTTTTACCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAGAATTACATTAGAAGTTTACTTCATAAAATAATTAGCTTTTACCT  700

seq1  TCATCCCTCTGTGAAGCTCAGTTCTACTACTTAGATCAGGGGGAGGGTCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCCCTCTGTGAAGCTCAGTTCTACTACTTAGATCAGGGGGAGGGTCT  750

seq1  GCTATTTGTAGGTTTGTCTTGGTTTTCCTTGTTGTTGCTTTGTTTTCTTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTATTTGTAGGTTTGTCTTGGTTTTCCTTGTTGTTGCTTTGTTTTCTTT  800

seq1  TGAAGACAGTCTCACTCTGCAGCCCTGGCTGACCCAGGGCTCACTGGGAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGACAGTCTCACTCTGCAGCCCTGGCTGACCCAGGGCTCACTGGGAT  850

seq1  CTGCCTGTCTTGGCCTCTGCCCTCCTTCCACCACCACCCCTTGCCAGCGC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCTGTCTTGGCCTCTGCCCTCCTTCCACCACCACCCCTTGCCAGCGC  900

seq1  TGGGATTAAATGTATATGCCCCAGCAAGCATACTACTGGTAAGTACTTTT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGATTAAATGTATATGCCCCAGCAAGCATACTACTGGTAAGTACTTTT  950

seq1  ATTCCCCTTCTTACCAGCAAATAAACCCATGAAGCACCAAGTCATAAAAT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCCCTTCTTACCAGCAAATAAACCCATGAAGCACCAAGTCATAAAAT  1000

seq1  GGCTTTAGCAAGCTGCTC-TTTTTCTCAACAGAGAAAAGTTGGATTTGTT  1049
      |||||||||||||||||| |||||||||||||||||||| ||||||||||
seq2  GGCTTTAGCAAGCTGCTCTTTTTTCTCAACAGAGAAAAG-TGGATTTGTT  1049

seq1  TGTTTGGTTGGTCGGTTGGTTTTTGTTTTGATTTGC-TGTCTGG--TGAG  1096
      ||||||| |||||| | | ||||||||||||||||| |||||||   |||
seq2  TGTTTGG-TGGTCGTTGGTTTTTTGTTTTGATTTGCTTGTCTGGGTGGAG  1098

seq1  CTGCTGTGACTACTACA--GCGCATGTAT--AAGTAACACCTACCAAATT  1142
      |||||||||||||||||  ||||||||||  |||||||| ||| |||  |
seq2  CTGCTGTGACTACTACAAGGCGCATGTATTAAAGTAACA-CTAACAA--T  1145

seq1  ATGAAGCAAAAATT-ATACACATTTTGTTATA-TCCCTG-CATTAG---A  1186
      ||  ||| |||||| || |||| ||||||||| |||||| ||||||    
seq2  ATTGAGCCAAAATTAATTCACAGTTTGTTATATTCCCTGCCATTAGGAAG  1195

seq1  ACAATAACTTATCT  1200
      ||||||||||||||
seq2  ACAATAACTTATCT  1209


seq1: chr9_90624379_90624854
seq2: B6Ng01-338C24.g_68_546 (reverse)

seq1  CTGATATAGCTGTCTCCTGAGAGGCTCTGCCAGTGCCTGACAAATACAGA  50
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  CTGATATAGCTGTCTCCTGAGAAGCTCTGCCAGTGCCTGACAAATACAGA  50

seq1  AATGGATGCTCACAGCCATCCACTGGACAGAGCACGGGTTCCCCAATGAA  100
      | |||||||||||||| ||| | |||||| ||||| || |||||||||||
seq2  AGTGGATGCTCACAGCAATCTATTGGACAAAGCACAGGATCCCCAATGAA  100

seq1  GGAGCTAGAGAAAGGACTCAAGGAGCTGAAGAGG-TTTGCAGCCCCGTAG  149
      ||||| |||||||| || |||| |||||||| || ||| ||||||| |||
seq2  GGAGCCAGAGAAAGTACCCAAGAAGCTGAAGGGGTTTTCCAGCCCCATAG  150

seq1  GAGGAACAATAATATGAACTAACTAGTATCTCCAGAGCTCTCAGGAACTA  199
      ||||||||| ||||||||||||| |||||||||||||||| | || ||||
seq2  GAGGAACAACAATATGAACTAACCAGTATCTCCAGAGCTCCCTGGGACTA  200

seq1  AACCACCAGCCAAAGAAAACACATGGTGGGACTCATGGCTGTAGCTGCAT  249
      |||||||| |||||||||||| |||||||||||||||||| |||||||||
seq2  AACCACCAACCAAAGAAAACATATGGTGGGACTCATGGCTCTAGCTGCAT  250

seq1  ATGTAGCAGAGGATGGCCTGGTCGGTCATCAATGGGAGGAGAGGTCTTTG  299
      |||||||||||||||| || || ||||||||||||||||||||| | |||
seq2  ATGTAGCAGAGGATGGTCTAGTTGGTCATCAATGGGAGGAGAGGCCCTTG  300

seq1  GTCCTGTGAAGGTTCTATGCCCCAGTATGGGGGAGTGCCAGGGCCAGAAA  349
      |||||||||||||||||||||||||||| ||||| || ||||||||| ||
seq2  GTCCTGTGAAGGTTCTATGCCCCAGTATAGGGGAATGGCAGGGCCAGGAA  350

seq1  GCAGGAGTGGGTGGGTTGGTAAGCAGGGGGAGGAGGGAGGGATAGGGGAT  399
      |||||||||||||||||||  ||||||||||||  | ||||   ||||||
seq2  GCAGGAGTGGGTGGGTTGGGGAGCAGGGGGAGGGAGAAGGGGATGGGGAT  400

seq1  TTTTGGAGGGGAAACTAGGAAAGGGGATAATATTTGAAATGTAAATAGAG  449
      |||  |||| ||||||||||||||||| || |||| ||||||||||| ||
seq2  TTTCAGAGGAGAAACTAGGAAAGGGGACAACATTTCAAATGTAAATAAAG  450

seq1  AAAATATCTAATAAAAA--TCAAAAAAGA  476
      |||||||||||||||||   |||||||||
seq2  AAAATATCTAATAAAAAGTACAAAAAAGA  479


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