BAC Information

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BAC

Clone NameB6Ng01-340N02
Chromosome11 (Build37)1 (Build37)
Map Location 38,751,734 - 38,752,93767,797,540 - 67,797,864
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC276941
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-340N02.bB6Ng01-340N02.g
ACCGA124396GA124397
length1,1821,002
definitionB6Ng01-340N02.b B6Ng01-340N02.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(38,751,734 - 38,752,937)(67,797,540 - 67,797,864)
sequence
gaattcatttaggaatgggggagcatgggaaccattgccactagatgtca
ctattaccagaccatttcctgagctccagattctttttctcacattccca
gacttcctggactttgcaagaaattctttctggccatattaattccatct
aatctcttgtttgcttgtttagtcgaaggttactgctaaatttacatcct
ttctcgtgtccctttacaaatgggcaaaacaattttcagtgcagaaaatc
acatcccagggatttaaaatttgttatcattttattaattaggtgacggt
gtcttgccgagtcagtcagtttattatttcttaagaaagatcttgtaacc
gagtttgtgtctcattagagaactgcagggccagacagattaatgcacat
atgctacaacattaattagagagtcagattttcacacaatagataatttg
attgtgacaatggagacagcaattaattgagtctcctttagagagcatcc
aaggggcctgagttgaggagagagccagctatgatttgctggagtcagac
gcaaagggacactagaattataggattaccgagttagagagacttcagag
gttttcaagttgagttaggtttctcatccatgccccgatctgaagcagaa
attttaccgaaacccccaaatactggtctataacaatacgtaatttgtgg
ctcagtggaggttttggcaattatattccaattatatttctttgtacaaa
tttgctaaatgtgttttggccaataaagggctatgctactaaactataca
gcacataatccataccacatttttaaaaaaatatatctctttaagtcaat
ttgcaaaagccagggcttaattaaaaatatcagcaatcaactgctaaaat
gcccttaataatagagtagtggattcagaataacaggagtgactgagtag
tcaaacttccttgttagctgacatttaaaattcacatttaaaaatgacat
ttagcagatgagatgacgatgcaatgaaatctttatttaggaggggtgaa
aaacagaatctatttgtagtgatatatttctcttctactctgatcagcta
gtttggctggtctttgatgaatatttctcaattctcacattcccccctcc
ccaatgctagtcctccgatcgtcccccccatt

gaattctttgtttagctctgtaccccatttttaatggggttacttgaatt
tctggagttgagcttcttgagctctttgtatatattgcatattagtcccc
tatcagatttaggattggtaaaaattctttcccaatctgttggtggcctg
tttgtcttattgacagtatctttagctctaaagaagcttttcaattttat
gaggtcctatttgttgattcttgattatgcagcctaagccattgctattc
tgtttaggaatttttgccctgtgcccatatcttcaaaggttttccccact
ttctcctctataaatttcagtgactctggttttatgtggagttctttgat
ccacttagacttaagctttgtacaaggagataagaatggaccccacccag
ggattcatcccataatcagccaccaaacccagacactattgcatatgtca
gaaaaattttgctgaagagaccgtgttatagctctctcatatgaggtatg
ccagtgcctcataaatacagaaatgaatgctcacagtcataagatggaac
acagagccccacctcctgaatgtttttctgttctgtgaacgtatacagaa
aataaaccatctaaacacaattatgttgccattttgaatacatatgcaaa
agttaatataggtatttgttagcagattgggttaaattcatatatacttg
ttttttatttacatctcactatgatgcacgggcgcatagtttggaagtta
tccttttaaaatgtatctgtatgtgtacttcactgttttattatagatca
gtaaagtcctatctaatattccatcacagtcataagatagaacacagagc
cccaatggagaagctagagaaagcacccaaggagatgaaggggtctgcaa
ccctataggtggaacaacatatgaactaaccagtatccccagagctcatt
atctctagctacatatgtagcagaggatggctagttgccatcattgggaa
ga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_38751734_38752937
seq2: B6Ng01-340N02.b_50_1231

seq1  GAATTCATTTAGGAATGGGGGAGCATGGGAACCATTGCCACTAGATGTCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTTAGGAATGGGGGAGCATGGGAACCATTGCCACTAGATGTCA  50

seq1  CTATTACCAGACCATTTCCTGAGCTCCAGATTCTTTTTCTCACATTCCCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTACCAGACCATTTCCTGAGCTCCAGATTCTTTTTCTCACATTCCCA  100

seq1  GACTTCCTGGACTTTGCAAGAAATTCTTTCTGGCCATATTAATTCCATCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTCCTGGACTTTGCAAGAAATTCTTTCTGGCCATATTAATTCCATCT  150

seq1  AATCTCTTGTTTGCTTGTTTAGTCGAAGGTTACTGCTAAATTTACATCCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTCTTGTTTGCTTGTTTAGTCGAAGGTTACTGCTAAATTTACATCCT  200

seq1  TTCTCGTGTCCCTTTACAAATGGGCAAAACAATTTTCAGTGCAGAAAATC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCGTGTCCCTTTACAAATGGGCAAAACAATTTTCAGTGCAGAAAATC  250

seq1  ACATCCCAGGGATTTAAAATTTGTTATCATTTTATTAATTAGGTGACGGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCCCAGGGATTTAAAATTTGTTATCATTTTATTAATTAGGTGACGGT  300

seq1  GTCTTGCCGAGTCAGTCAGTTTATTATTTCTTAAGAAAGATCTTGTAACC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTGCCGAGTCAGTCAGTTTATTATTTCTTAAGAAAGATCTTGTAACC  350

seq1  GAGTTTGTGTCTCATTAGAGAACTGCAGGGCCAGACAGATTAATGCACAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTTGTGTCTCATTAGAGAACTGCAGGGCCAGACAGATTAATGCACAT  400

seq1  ATGCTACAACATTAATTAGAGAGTCAGATTTTCACACAATAGATAATTTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTACAACATTAATTAGAGAGTCAGATTTTCACACAATAGATAATTTG  450

seq1  ATTGTGACAATGGAGACAGCAATTAATTGAGTCTCCTTTAGAGAGCATCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTGACAATGGAGACAGCAATTAATTGAGTCTCCTTTAGAGAGCATCC  500

seq1  AAGGGGCCTGAGTTGAGGAGAGAGCCAGCTATGATTTGCTGGAGTCAGAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGGCCTGAGTTGAGGAGAGAGCCAGCTATGATTTGCTGGAGTCAGAC  550

seq1  GCAAAGGGACACTAGAATTATAGGATTACCGAGTTAGAGAGACTTCAGAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAAGGGACACTAGAATTATAGGATTACCGAGTTAGAGAGACTTCAGAG  600

seq1  GTTTTCAAGTTGAGTTAGGTTTCTCATCCATGCCCCGATCTGAAGCAGAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTCAAGTTGAGTTAGGTTTCTCATCCATGCCCCGATCTGAAGCAGAA  650

seq1  ATTTTACCGAAACCCCCAAATACTGGTCTATAACAATACGTAATTTGTGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTACCGAAACCCCCAAATACTGGTCTATAACAATACGTAATTTGTGG  700

seq1  CTCAGTGGAGGTTTTGGCAATTATATTCCAATTATATTTCTTTGTACAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGTGGAGGTTTTGGCAATTATATTCCAATTATATTTCTTTGTACAAA  750

seq1  TTTGCTAAATGTGTTTTGGCCAATAAAGGGCTATGCTACTAAACTATACA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCTAAATGTGTTTTGGCCAATAAAGGGCTATGCTACTAAACTATACA  800

seq1  GCACATAATCCATACCACATTTTTAAAAAAATATATCTCTTTAAGTCAAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACATAATCCATACCACATTTTTAAAAAAATATATCTCTTTAAGTCAAT  850

seq1  TTGCAAAAGCCAGGGCTTAATTAAAAATATCAGCAATCAACTGCTAAAAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCAAAAGCCAGGGCTTAATTAAAAATATCAGCAATCAACTGCTAAAAT  900

seq1  GCCCTTAATAATAGAGTAGTGGATTCAGAATAACAGGAGTGACTGAGTAG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTTAATAATAGAGTAGTGGATTCAGAATAACAGGAGTGACTGAGTAG  950

seq1  TCAAACTTCCTTGTTAGCTGACATTTAAAAATTCACATTTAAAAAATGAC  1000
      |||||||||||||||||||||||||| ||||||||||||| |||||||||
seq2  TCAAACTTCCTTGTTAGCTGACATTT-AAAATTCACATTT-AAAAATGAC  998

seq1  ATTTAGCAGATGAGATGACGATGCAAATGAAATCTATATTTAGGGAGGGG  1050
      |||||||||||||||||||||||| |||||||||| |||||| |||||||
seq2  ATTTAGCAGATGAGATGACGATGC-AATGAAATCTTTATTTA-GGAGGGG  1046

seq1  TGAAAAACAGAATCTAATTTGTAGTGATTATATATTCTCTTCTACCTCTG  1100
      ||||||||||||||| ||||||||||| ||||| |||||||||| |||||
seq2  TGAAAAACAGAATCT-ATTTGTAGTGA-TATAT-TTCTCTTCTA-CTCTG  1092

seq1  GAATTCAGCTTAAGTTTGCTTGGTCCTTTATAAATATTTCTC-ATTCTCA  1149
          ||||||  ||||||  ||||| || || |||||||||| |||||||
seq2  ---ATCAGCT--AGTTTGGCTGGTCTTTGATGAATATTTCTCAATTCTCA  1137

seq1  CATTCTCCTCTTTCCCCAATACCCAGTCTCTCCCCTATCCTCCCCCCCCC  1199
      ||||| || |  ||||||||  | ||||   | || ||| |    |||||
seq2  CATTCCCCCC--TCCCCAAT-GCTAGTC---CTCCGATCGT----CCCCC  1177

seq1  CCATT  1204
      |||||
seq2  CCATT  1182


seq1: chr1_67797540_67797864
seq2: B6Ng01-340N02.g_719_1067

seq1  TAATATAGGTATTTGTTGTTTTGATGGATCCCTAAATAAAGCCCAAACAA  50
      |||||||||||||||||       ||| |   |||||      || | | 
seq2  TAATATAGGTATTTGTTAGCAGATTGGGT---TAAAT-----TCATATA-  41

seq1  GACTCCTGCTGTTCCATACATTTGTTACAT---AAAATAGGGTATAGTAG  97
         | ||  | ||       ||  ||||||   |  ||   | |  |  |
seq2  ---TACTTGTTTT-------TTATTTACATCTCACTATGATGCACGGGCG  81

seq1  CATACAATTAGAATTCTTCAAATTTAACAATG-----GTGTGCACAATTC  142
      ||||   || ||| |  ||   ||| | ||||     || ||   | |||
seq2  CATA-GTTTGGAAGTTATC--CTTTTAAAATGTATCTGTATGTGTACTTC  128

seq1  -CAGTTTAATTATTG-TGAGTATTTTAGGACAAGGTTCTCTT-CAAAAGA  189
       | |||| ||||| | | ||||    ||  | |  |  | || ||  | |
seq2  ACTGTTTTATTATAGATCAGTA---AAGTCCTATCTAATATTCCATCACA  175

seq1  GT-GTGTTAAAGACGAGAGTG---CTATGTA-----TTTA-AATTTAGCT  229
      ||  |   | |||  | || |   | ||| |     |  | ||   | | 
seq2  GTCATAAGATAGAACACAGAGCCCCAATGGAGAAGCTAGAGAAAGCACCC  225

seq1  TTTGAAATGAA---------------AAAGG-------ACAAATGCA-AA  256
         || |||||               | |||       ||| ||| |  |
seq2  AAGGAGATGAAGGGGTCTGCAACCCTATAGGTGGAACAACATATGAACTA  275

seq1  AATTGTGTGC---AAGATTGTTA-----AGCCAGCATGTGTAGCAGAAGA  298
      |   || | |    || |  |||     ||| | ||| ||||||||| ||
seq2  ACCAGTATCCCCAGAGCTCATTATCTCTAGCTA-CATATGTAGCAGAGGA  324

seq1  TGGCCTAGTTGGTCATCATTGGGAAGA  325
      ||| |||||| | ||||||||||||||
seq2  TGG-CTAGTT-GCCATCATTGGGAAGA  349


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