BAC Information

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BAC

Clone NameB6Ng01-341O11
Chromosome11 (Build37)
Map Location 60,942,590 - 61,083,034
singlet/doubletdoublet
Overlap geneLOC668228, Tnfrsf13b, Usp22, LOC668239, Aldh3a1, Aldh3a2
Upstream geneRai1, Srebf1, Tom1l2, LOC667892, Lrrc48, Atpaf2, 4933439F18Rik, LOC674310, Drg2, Myo15, Alkbh5, LOC100042448, LOC624403, LOC624424, OTTMUSG00000007757, LOC668206, Llgl1, Flii, Smcr7, Top3a, LOC100042517, Smcr8, Shmt1, LOC625958, LOC637900, Dhrs7b, Tmem11, Gtlf3b, Map2k3, Kcnj12
Downstream gene4933429E10Rik, 1300013J15Rik, LOC100042602, LOC626150, Zfp179, Mfap4, Mapk7, 3110043A19Rik, Eppb9, Epn2, Grap, Slc5a10, 2310040C09Rik, Prpsap2, Ulk2, Akap10, D630015H07, LOC626325, LOC100041558, Specc1, Adora2b, 2410012H22Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-341O11.bB6Ng01-341O11.g
ACCGA125156GA125157
length1,0741,026
definitionB6Ng01-341O11.b B6Ng01-341O11.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(60,942,590 - 60,943,672)(61,082,008 - 61,083,034)
sequence
gaattccaagttgccttcctcgacgcctggactaaggggtgagaagaccc
atcagtttggggcttggaagaggagcggcgtgatgcgcccctgccttgca
tgtggtacggagtgtaaccttatagtcctggtcaggagcctgtagcacca
cggtgcagatatgccgggtctttctgtgtggtgcaagctgctgccttgac
tttttaaaagaaggtttcagactaatctgcctcatcagttttccgtggag
cagcgccttgccatctagacaagcatgtcaggaggcctccagaaattgga
ggtgctgccgactcttgggttttagggttcgcaggaaccggtctaggtta
caagaggagttcctccttccctgctatctaccagcagtgctgtctcctca
agcttccttttctgactcagttgccgtcactcttggaggtctcctgccca
tcctaggggctgggcggggcttctgggctttacatggatctggttggtgg
gtgagaaagaagggtgggcatagcttcttctggtcagtcttgcggtctga
ggccgtggctgtggtgggtcctggagcctctctcaagctgacctgctcgt
ctcactcactccacagggatggcagtagctccacttaaaagaatttccgt
ttttagtagaatcacaattgtgtacctatcaccacaacctaattttagga
tgtttccgatatcccaaaagaatccttattaatcttactttctcccacct
ccagcctcagaccacagctaacggatctcccatgtctagaggtttgcttt
ttttttttttttttgggtattttgtatcagcagcatcgcgctcagtgttg
tgctgttgattccgtgtcctcagtgattccacatgttttccacaggtcca
cccattttgtagcatgaccatagctacatggtcatagctaaataatatca
acattttagggataactattttttaatcattcatcagatggccagcattc
ggtggttgccactcaactggggaacgaaaaaatgcctttgggagagtgta
atttttgggcagtggttcatcctt
gaattctctatgcaaaccaggctggccttaaaatcacagagatccaccag
cctcttcctctcaagtgttgggattaaagatgttcatcaccatgctggta
tattcttaaggcagccctcagtttcgttctcgggaagaaaagcagctttg
ttgccactctgatcaacttgccctaggtaatatagattcctgttctagtt
cacactagaattctacgacttatatgtcatagaacacgcctcaatttatc
ttctatagctcatactcacacaatgcttattaactcaagagtttaaaatt
ggtcactctcaggtcagataagaaaagataaccaagcacactcctaaggt
gaactctgagctaatttaaacattgccacacagtgctagattttgaccct
cagcagcgggcttgctcagtacaggtgattctgagttggagggtgcaggg
tcctgattggttttgtaacagagaagcctgctcctcttacactttctcag
ctgcagtccaccagcttcaaccatgaaaccttcaaagagaaagctgtgca
gcttgttttggcttgcttcagtaagggcaaagcagaggtgaagggtgggg
tggtcttgcttcaccaagaagcgcctcagataagcctcaactcaccggcc
attgtgaaagctacaaagttggggaagttagctggacactctagacagag
gacacagaatgccaaaaaagccctgggatagcaatgtgcccaagtgttca
gtgaacagcaaggaagccactctggctaaaactcattacgtgggcaaatc
ctataagaagaggcacatccagaggccaagacttataggcttatagagga
ttatatgggctttgaattttattctctggagagttttgagagagggactg
actaataaaggtcaccgtacattctgaatgtatcagtgacgctgaaaggg
gaactagtcaaacccacccagtacttcatgcaggaggattttcaggatat
tgaaggaagcatggggtggaagtggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_60942590_60943672
seq2: B6Ng01-341O11.b_50_1123

seq1  GAATTCCAAGTTGCCTTCCTCGACGCCTGGACTAAGGGGTGAGAAGACCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAAGTTGCCTTCCTCGACGCCTGGACTAAGGGGTGAGAAGACCC  50

seq1  ATCAGTTTGGGGCTTGGAAGAGGAGCGGCGTGATGCGCCCCTGCCTTGCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGTTTGGGGCTTGGAAGAGGAGCGGCGTGATGCGCCCCTGCCTTGCA  100

seq1  TGTGGTACGGAGTGTAACCTTATAGTCCTGGTCAGGAGCCTGTAGCACCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGTACGGAGTGTAACCTTATAGTCCTGGTCAGGAGCCTGTAGCACCA  150

seq1  CGGTGCAGATATGCCGGGTCTTTCTGTGTGGTGCAAGCTGCTGCCTTGAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGTGCAGATATGCCGGGTCTTTCTGTGTGGTGCAAGCTGCTGCCTTGAC  200

seq1  TTTTTAAAAGAAGGTTTCAGACTAATCTGCCTCATCAGTTTTCCGTGGAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTAAAAGAAGGTTTCAGACTAATCTGCCTCATCAGTTTTCCGTGGAG  250

seq1  CAGCGCCTTGCCATCTAGACAAGCATGTCAGGAGGCCTCCAGAAATTGGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCGCCTTGCCATCTAGACAAGCATGTCAGGAGGCCTCCAGAAATTGGA  300

seq1  GGTGCTGCCGACTCTTGGGTTTTAGGGTTCGCAGGAACCGGTCTAGGTTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGCTGCCGACTCTTGGGTTTTAGGGTTCGCAGGAACCGGTCTAGGTTA  350

seq1  CAAGAGGAGTTCCTCCTTCCCTGCTATCTACCAGCAGTGCTGTCTCCTCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAGGAGTTCCTCCTTCCCTGCTATCTACCAGCAGTGCTGTCTCCTCA  400

seq1  AGCTTCCTTTTCTGACTCAGTTGCCGTCACTCTTGGAGGTCTCCTGCCCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTCCTTTTCTGACTCAGTTGCCGTCACTCTTGGAGGTCTCCTGCCCA  450

seq1  TCCTAGGGGCTGGGCGGGGCTTCTGGGCTTTACATGGATCTGGTTGGTGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTAGGGGCTGGGCGGGGCTTCTGGGCTTTACATGGATCTGGTTGGTGG  500

seq1  GTGAGAAAGAAGGGTGGGCATAGCTTCTTCTGGTCAGTCTTGCGGTCTGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGAAAGAAGGGTGGGCATAGCTTCTTCTGGTCAGTCTTGCGGTCTGA  550

seq1  GGCCGTGGCTGTGGTGGGTCCTGGAGCCTCTCTCAAGCTGACCTGCTCGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCGTGGCTGTGGTGGGTCCTGGAGCCTCTCTCAAGCTGACCTGCTCGT  600

seq1  CTCACTCACTCCACAGGGATGGCAGTAGCTCCACTTAAAAGAATTTCCGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACTCACTCCACAGGGATGGCAGTAGCTCCACTTAAAAGAATTTCCGT  650

seq1  TTTTAGTAGAATCACAATTGTGTACCTATCACCACAACCTAATTTTAGGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAGTAGAATCACAATTGTGTACCTATCACCACAACCTAATTTTAGGA  700

seq1  TGTTTCCGATATCCCAAAAGAATCCTTATTAATCTTACTTTCTCCCACCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTCCGATATCCCAAAAGAATCCTTATTAATCTTACTTTCTCCCACCT  750

seq1  CCAGCCTCAGACCACAGCTAACGGATCTCCCATGTCTAGAGGTTTGCTTT  800
      |||||||||||||||||||||||||||||||||||||||||||||||   
seq2  CCAGCCTCAGACCACAGCTAACGGATCTCCCATGTCTAGAGGTTTGC---  797

seq1  TTTTTTTTTTTTTTTTTTTTGGATATTTTGTATCAGCAGCATCGCGCTCA  850
         ||||||||||||||||||| |||||||||||||||||||||||||||
seq2  ---TTTTTTTTTTTTTTTTTGGGTATTTTGTATCAGCAGCATCGCGCTCA  844

seq1  GTG-TGTGCTG-TGATTCCGTGTTCCCTAGTGATT-CACATGTTTT-CAC  896
      ||| ||||||| |||||||||| |||  ||||||| |||||||||| |||
seq2  GTGTTGTGCTGTTGATTCCGTG-TCCTCAGTGATTCCACATGTTTTCCAC  893

seq1  AGGT-CACCCATTTTGTAGCATGACCATAGCTACATGTTCATAGCTAAAA  945
      |||| |||||||||||||||||||||||||||||||| |||||||| |||
seq2  AGGTCCACCCATTTTGTAGCATGACCATAGCTACATGGTCATAGCT-AAA  942

seq1  TAATATC-ACATTTTAGGGATAAACTATTTTTTATTCATTCATCAGATGG  994
      ||||||| ||||||||||||| |||||||||||| |||||||||||||||
seq2  TAATATCAACATTTTAGGGAT-AACTATTTTTTAATCATTCATCAGATGG  991

seq1  CCAGCATTCGAGTGGTTGCCACTC-ACTGGGGACAGAGAAAAATGCTTTT  1043
      |||||||||| ||||||||||||| ||||||||  || |||||||| |||
seq2  CCAGCATTCG-GTGGTTGCCACTCAACTGGGGAACGA-AAAAATGCCTTT  1039

seq1  GTGAGAGTGGTTATATTTTGGGCAGTGTGTTTTCATCCTT  1083
      | |||||||  ||  ||||||||||||    |||||||||
seq2  GGGAGAGTG--TAATTTTTGGGCAGTG---GTTCATCCTT  1074

seq1: chr11_61082008_61083034
seq2: B6Ng01-341O11.g_73_1098 (reverse)

seq1  CCCACTCCACCCCCATGCTTCCTTCATTATTCCTGAAATCCTTCCTGCAT  50
      |||||| |  |||||||||||||||| || ||||||||  | ||||||||
seq2  CCCACTTCCACCCCATGCTTCCTTCAATA-TCCTGAAAATCCTCCTGCAT  49

seq1  GAAGTAACTGGGTGGGTTTGACTAGTTCCCC-TTCAGCGTCACTGATACA  99
      ||||| ||||||||||||||||||||||||| ||||||||||||||||||
seq2  GAAGT-ACTGGGTGGGTTTGACTAGTTCCCCTTTCAGCGTCACTGATACA  98

seq1  TTCAGAATGTACGGTGACCTTTATTAGTCAGTCCCTCTCTCAAAACTCTC  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGAATGTACGGTGACCTTTATTAGTCAGTCCCTCTCTCAAAACTCTC  148

seq1  CAGAGAATAAAATTCAAAGCCCATATAATCCTCTATAAGCCTATAAGTCT  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGAATAAAATTCAAAGCCCATATAATCCTCTATAAGCCTATAAGTCT  198

seq1  TGGCCTCTGGATGTGCCTCTTCTTATAGGATTTGCCCACGTAATGAGTTT  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCTCTGGATGTGCCTCTTCTTATAGGATTTGCCCACGTAATGAGTTT  248

seq1  TAGCCAGAGTGGCTTCCTTGCTGTTCACTGAACACTTGGGCACATTGCTA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCCAGAGTGGCTTCCTTGCTGTTCACTGAACACTTGGGCACATTGCTA  298

seq1  TCCCAGGGCTTTTTTGGCATTCTGTGTCCTCTGTCTAGAGTGTCCAGCTA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAGGGCTTTTTTGGCATTCTGTGTCCTCTGTCTAGAGTGTCCAGCTA  348

seq1  ACTTCCCCAACTTTGTAGCTTTCACAATGGCCGGTGAGTTGAGGCTTATC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCCCCAACTTTGTAGCTTTCACAATGGCCGGTGAGTTGAGGCTTATC  398

seq1  TGAGGCGCTTCTTGGTGAAGCAAGACCACCCCACCCTTCACCTCTGCTTT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGCGCTTCTTGGTGAAGCAAGACCACCCCACCCTTCACCTCTGCTTT  448

seq1  GCCCTTACTGAAGCAAGCCAAAACAAGCTGCACAGCTTTCTCTTTGAAGG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTTACTGAAGCAAGCCAAAACAAGCTGCACAGCTTTCTCTTTGAAGG  498

seq1  TTTCATGGTTGAAGCTGGTGGACTGCAGCTGAGAAAGTGTAAGAGGAGCA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCATGGTTGAAGCTGGTGGACTGCAGCTGAGAAAGTGTAAGAGGAGCA  548

seq1  GGCTTCTCTGTTACAAAACCAATCAGGACCCTGCACCCTCCAACTCAGAA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTCTCTGTTACAAAACCAATCAGGACCCTGCACCCTCCAACTCAGAA  598

seq1  TCACCTGTACTGAGCAAGCCCGCTGCTGAGGGTCAAAATCTAGCACTGTG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACCTGTACTGAGCAAGCCCGCTGCTGAGGGTCAAAATCTAGCACTGTG  648

seq1  TGGCAATGTTTAAATTAGCTCAGAGTTCACCTTAGGAGTGTGCTTGGTTA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCAATGTTTAAATTAGCTCAGAGTTCACCTTAGGAGTGTGCTTGGTTA  698

seq1  TCTTTTCTTATCTGACCTGAGAGTGACCAATTTTAAACTCTTGAGTTAAT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTCTTATCTGACCTGAGAGTGACCAATTTTAAACTCTTGAGTTAAT  748

seq1  AAGCATTGTGTGAGTATGAGCTATAGAAGATAAATTGAGGCGTGTTCTAT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCATTGTGTGAGTATGAGCTATAGAAGATAAATTGAGGCGTGTTCTAT  798

seq1  GACATATAAGTCGTAGAATTCTAGTGTGAACTAGAACAGGAATCTATATT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATATAAGTCGTAGAATTCTAGTGTGAACTAGAACAGGAATCTATATT  848

seq1  ACCTAGGGCAAGTTGATCAGAGTGGCAACAAAGCTGCTTTTCTTCCCGAG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTAGGGCAAGTTGATCAGAGTGGCAACAAAGCTGCTTTTCTTCCCGAG  898

seq1  AACGAAACTGAGGGCTGCCTTAAGAATATACCAGCATGGTGATGAACATC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACGAAACTGAGGGCTGCCTTAAGAATATACCAGCATGGTGATGAACATC  948

seq1  TTTAATCCCAACACTTGAGAGGAAGAGGCTGGTGGATCTCTGTGATTTTA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAATCCCAACACTTGAGAGGAAGAGGCTGGTGGATCTCTGTGATTTTA  998

seq1  AGGCCAGCCTGGTTTGCATAGAGAATTC  1027
      ||||||||||||||||||||||||||||
seq2  AGGCCAGCCTGGTTTGCATAGAGAATTC  1026